Wall clock time and date at job start Tue Mar 31 2020 13:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.57699 * 2 1 4 4 O 1.43070 * 109.52809 * 239.83963 * 2 1 3 5 5 C 1.43074 * 113.59381 * 182.14737 * 4 2 1 6 6 C 1.53139 * 109.15510 * 57.94934 * 5 4 2 7 7 O 1.43080 * 109.14964 * 304.69141 * 6 5 4 8 8 C 1.43074 * 113.59420 * 57.94714 * 7 6 5 9 9 H 1.08999 * 109.52418 * 182.14529 * 8 7 6 10 10 C 1.50700 * 109.52128 * 62.01528 * 8 7 6 11 11 O 1.21283 * 120.00111 * 350.72869 * 10 8 7 12 12 N 1.34780 * 119.99921 * 170.71861 * 10 8 7 13 13 C 1.46496 * 119.99960 * 184.69364 * 12 10 8 14 14 C 1.53583 * 112.24304 * 298.98547 * 13 12 10 15 15 C 1.54224 * 106.67667 * 238.83687 * 14 13 12 16 16 C 1.54756 * 104.15529 * 335.05072 * 15 14 13 17 17 C 1.54778 * 103.21175 * 37.81519 * 16 15 14 18 18 H 1.09007 * 111.42065 * 84.68727 * 17 16 15 19 19 N 1.46981 * 109.16577 * 209.59150 * 17 16 15 20 20 C 1.36936 * 125.57787 * 294.38307 * 19 17 16 21 21 H 1.08001 * 120.00098 * 11.46079 * 20 19 17 22 22 C 1.38810 * 119.99876 * 191.46209 * 20 19 17 23 23 N 1.31619 * 120.00102 * 11.15614 * 22 20 19 24 24 Si 1.86807 * 120.00043 * 191.15622 * 22 20 19 25 25 H 1.48497 * 109.47291 * 94.97184 * 24 22 20 26 26 H 1.48499 * 109.46952 * 214.97489 * 24 22 20 27 27 H 1.48496 * 109.47086 * 334.96927 * 24 22 20 28 28 C 1.47366 * 108.84103 * 114.35268 * 19 17 16 29 29 C 1.54913 * 112.33624 * 62.35890 * 13 12 10 30 30 H 1.08991 * 109.47606 * 293.08175 * 1 2 3 31 31 H 1.09007 * 109.47016 * 53.08334 * 1 2 3 32 32 H 1.08999 * 109.46922 * 173.08079 * 1 2 3 33 33 H 1.09006 * 109.52365 * 298.04343 * 5 4 2 34 34 H 1.09001 * 109.57971 * 177.88658 * 5 4 2 35 35 H 1.08996 * 109.52748 * 184.79156 * 6 5 4 36 36 H 1.08997 * 109.52194 * 64.58981 * 6 5 4 37 37 H 0.97004 * 120.00008 * 4.69247 * 12 10 8 38 38 H 1.09007 * 110.01331 * 358.13539 * 14 13 12 39 39 H 1.09000 * 110.01694 * 119.48068 * 14 13 12 40 40 H 1.08992 * 110.49652 * 93.72619 * 15 14 13 41 41 H 1.09005 * 110.49165 * 216.25517 * 15 14 13 42 42 H 1.09003 * 110.66886 * 156.24718 * 16 15 14 43 43 H 1.09005 * 110.67163 * 279.21873 * 16 15 14 44 44 H 0.97001 * 119.99998 * 179.97438 * 23 22 20 45 45 H 1.09004 * 110.36672 * 94.15040 * 28 19 17 46 46 H 1.09004 * 110.37316 * 216.36111 * 28 19 17 47 47 H 1.09001 * 110.96614 * 204.33712 * 29 13 12 48 48 H 1.09001 * 110.96696 * 328.09385 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 8 2.0082 -0.6775 -1.1659 5 6 3.4345 -0.7711 -1.2292 6 6 3.9463 -1.4963 0.0187 7 8 3.4681 -0.8188 1.1847 8 6 2.0418 -0.7252 1.2479 9 1 1.7525 -0.1667 2.1382 10 6 1.4484 -2.1092 1.3066 11 8 2.1536 -3.0795 1.1269 12 7 0.1341 -2.2688 1.5590 13 6 -0.4231 -3.6143 1.7181 14 6 -0.2484 -4.4691 0.4542 15 6 -1.6627 -4.8893 0.0051 16 6 -2.5040 -4.8335 1.3028 17 6 -1.9414 -3.5920 2.0360 18 1 -2.4167 -2.6748 1.6879 19 7 -2.0816 -3.7836 3.4865 20 6 -3.2662 -3.8650 4.1686 21 1 -4.1945 -3.9735 3.6275 22 6 -3.2737 -3.8082 5.5555 23 7 -2.1841 -3.4586 6.2059 24 14 -4.8304 -4.2279 6.4991 25 1 -4.7905 -5.6542 6.9106 26 1 -4.9253 -3.3671 7.7054 27 1 -6.0129 -3.9960 5.6313 28 6 -0.7386 -3.8744 4.0865 29 6 0.1887 -4.3658 2.9267 30 1 -0.3634 0.4028 0.9453 31 1 -0.3633 0.6173 -0.8217 32 1 -0.3633 -1.0202 -0.1238 33 1 3.8638 0.2300 -1.2705 34 1 3.7248 -1.3289 -2.1195 35 1 5.0363 -1.4962 0.0188 36 1 3.5811 -2.5233 0.0187 37 1 -0.4428 -1.4927 1.6354 38 1 0.2330 -3.8831 -0.3289 39 1 0.3498 -5.3517 0.6804 40 1 -2.0527 -4.1886 -0.7331 41 1 -1.6494 -5.9011 -0.4003 42 1 -3.5604 -4.6976 1.0709 43 1 -2.3547 -5.7350 1.8971 44 1 -2.1895 -3.4186 7.1750 45 1 -0.4150 -2.8961 4.4421 46 1 -0.7366 -4.5944 4.9049 47 1 0.1120 -5.4450 2.7944 48 1 1.2244 -4.0668 3.0882 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991119106.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:34 Heat of formation + Delta-G solvation = -105.071266 kcal Electronic energy + Delta-G solvation = -30499.168688 eV Core-core repulsion = 26554.499295 eV Total energy + Delta-G solvation = -3944.669393 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.23255 -40.85450 -38.94247 -37.15406 -36.00136 -35.31797 -33.81101 -33.15089 -31.36423 -29.96407 -28.51558 -28.41536 -27.13824 -25.73665 -24.27343 -23.52630 -22.44463 -21.58527 -20.74833 -20.24045 -18.85516 -18.27044 -18.03046 -17.83237 -17.20444 -16.85938 -16.67228 -16.37811 -15.94309 -15.92712 -15.39579 -14.96981 -14.90572 -14.57523 -14.48753 -13.98348 -13.79750 -13.55891 -13.38873 -13.25668 -13.18473 -13.00069 -12.93543 -12.82511 -12.62145 -12.61058 -12.36159 -12.01874 -11.90528 -11.87794 -11.69877 -11.66243 -11.51948 -11.43304 -11.24569 -10.73203 -10.65810 -9.98737 -9.76849 -8.82818 -7.85351 -5.19895 1.47802 1.49655 1.53177 1.57960 2.06230 2.51253 2.63255 2.68826 3.33525 3.35543 3.40458 3.63638 3.67845 3.88916 3.91421 3.95897 3.99322 4.18120 4.24478 4.35209 4.37493 4.38477 4.43697 4.45961 4.59668 4.63269 4.66262 4.79429 4.83731 4.85371 4.87209 4.93732 5.04749 5.09396 5.15539 5.21359 5.23928 5.32902 5.45717 5.54170 5.60155 5.67945 5.73373 5.82926 6.03656 6.21038 6.54026 7.09216 7.21665 7.78578 8.45755 9.26623 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.019593 B = 0.003904 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.725406 B = 7170.905161 C = 7561.319208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.070 3.930 3 H 0.100 0.900 4 O -0.390 6.390 5 C 0.028 3.972 6 C -0.003 4.003 7 O -0.369 6.369 8 C 0.037 3.963 9 H 0.149 0.851 10 C 0.500 3.500 11 O -0.555 6.555 12 N -0.697 5.697 13 C 0.170 3.830 14 C -0.102 4.102 15 C -0.110 4.110 16 C -0.125 4.125 17 C 0.155 3.845 18 H 0.056 0.944 19 N -0.607 5.607 20 C -0.231 4.231 21 H 0.084 0.916 22 C -0.062 4.062 23 N -0.948 5.948 24 Si 0.971 3.029 25 H -0.293 1.293 26 H -0.298 1.298 27 H -0.264 1.264 28 C 0.190 3.810 29 C -0.131 4.131 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.409 0.591 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.051 0.949 44 H 0.246 0.754 45 H -0.002 1.002 46 H 0.025 0.975 47 H 0.068 0.932 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.539 7.237 -16.849 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.012 3.988 3 H 0.118 0.882 4 O -0.310 6.310 5 C -0.048 4.048 6 C -0.079 4.079 7 O -0.287 6.287 8 C -0.024 4.024 9 H 0.167 0.833 10 C 0.287 3.713 11 O -0.434 6.434 12 N -0.352 5.352 13 C 0.083 3.917 14 C -0.141 4.141 15 C -0.148 4.148 16 C -0.165 4.165 17 C 0.049 3.951 18 H 0.074 0.926 19 N -0.331 5.331 20 C -0.360 4.360 21 H 0.102 0.898 22 C -0.255 4.255 23 N -0.597 5.597 24 Si 0.800 3.200 25 H -0.220 1.220 26 H -0.225 1.225 27 H -0.189 1.189 28 C 0.064 3.936 29 C -0.171 4.171 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.093 0.907 37 H 0.248 0.752 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.016 0.984 46 H 0.043 0.957 47 H 0.086 0.914 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.973 6.583 -16.752 19.686 hybrid contribution -0.678 -0.034 1.422 1.576 sum 7.294 6.549 -15.330 18.196 Atomic orbital electron populations 1.22164 0.91106 1.04129 1.04948 1.22737 0.96988 0.95972 0.83133 0.88198 1.88100 1.22024 1.78764 1.42071 1.23364 0.80731 1.01622 0.99103 1.23765 1.01229 0.98098 0.84815 1.88126 1.18173 1.77651 1.44735 1.23113 0.83184 0.93044 1.03095 0.83332 1.21525 0.82125 0.92246 0.75424 1.90560 1.60241 1.42498 1.50134 1.46288 1.08892 1.08727 1.71281 1.21470 0.92733 0.82636 0.94874 1.22170 0.97779 0.98660 0.95444 1.22297 0.93502 1.02206 0.96777 1.22802 0.99472 0.98140 0.96129 1.22003 0.91679 0.96955 0.84510 0.92593 1.44615 1.01767 1.84657 1.02086 1.19355 0.85834 1.41708 0.89124 0.89838 1.25591 1.00120 1.02142 0.97660 1.70164 1.29048 1.53910 1.06569 0.85163 0.79752 0.76961 0.78100 1.22004 1.22518 1.18857 1.21299 0.83544 0.96198 0.92535 1.23387 0.98230 0.99331 0.96141 0.88553 0.89251 0.91632 0.90720 0.86301 0.86226 0.90653 0.75164 0.91810 0.92155 0.90167 0.90383 0.91433 0.93010 0.94524 0.98371 0.95664 0.91352 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 7.99 71.98 0.58 -2.18 16 2 C 0.07 1.35 3.15 30.64 0.10 1.45 16 3 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 4 O -0.39 -8.84 10.23 -136.00 -1.39 -10.23 16 5 C 0.03 0.52 7.05 72.03 0.51 1.03 16 6 C 0.00 -0.07 6.60 72.03 0.48 0.40 16 7 O -0.37 -9.96 10.54 -122.96 -1.30 -11.25 16 8 C 0.04 0.91 3.39 29.89 0.10 1.01 16 9 H 0.15 3.09 8.14 -2.39 -0.02 3.07 16 10 C 0.50 15.36 5.56 87.66 0.49 15.85 16 11 O -0.56 -20.30 11.57 15.79 0.18 -20.12 16 12 N -0.70 -21.06 3.95 -415.80 -1.64 -22.70 16 13 C 0.17 5.88 0.73 5.19 0.00 5.88 16 14 C -0.10 -3.12 5.21 31.20 0.16 -2.95 16 15 C -0.11 -2.92 6.84 31.61 0.22 -2.71 16 16 C -0.13 -4.20 6.25 31.80 0.20 -4.00 16 17 C 0.16 5.90 3.63 46.24 0.17 6.07 16 18 H 0.06 2.04 7.99 -2.38 -0.02 2.02 16 19 N -0.61 -29.59 3.06 -660.55 -2.02 -31.61 16 20 C -0.23 -12.35 9.97 84.03 0.84 -11.51 16 21 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 22 C -0.06 -3.42 5.37 84.86 0.46 -2.96 16 23 N -0.95 -56.47 10.80 21.65 0.23 -56.24 16 24 Si 0.97 44.92 29.57 68.60 2.03 46.94 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 27 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 28 C 0.19 9.47 5.45 87.40 0.48 9.95 16 29 C -0.13 -5.40 5.87 32.44 0.19 -5.21 16 30 H 0.10 1.28 7.64 -2.39 -0.02 1.26 16 31 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.06 1.33 5.95 -2.39 -0.01 1.32 16 33 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.08 2.21 5.31 -2.39 -0.01 2.19 16 37 H 0.41 10.81 5.86 -92.71 -0.54 10.27 16 38 H 0.06 1.96 7.40 -2.38 -0.02 1.94 16 39 H 0.06 1.95 7.37 -2.39 -0.02 1.94 16 40 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.05 1.95 8.11 -2.38 -0.02 1.94 16 44 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 45 H 0.00 -0.09 8.05 -2.38 -0.02 -0.11 16 46 H 0.02 1.43 7.04 -2.39 -0.02 1.41 16 47 H 0.07 2.78 7.63 -2.39 -0.02 2.76 16 48 H 0.06 2.56 6.80 -2.39 -0.02 2.54 16 Total: -1.00 -69.62 358.66 1.47 -68.15 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.42 Total: 26.95 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 4.95 Total: 10.11 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -3.43 Total: -110.55 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -2.50 Total: -41.60 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -69.62 1.47 -68.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991119106.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.925 kcal (2) G-P(sol) polarization free energy of solvation -69.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds