Wall clock time and date at job start Tue Mar 31 2020 15:40:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 N 1.46502 * 109.46779 * 2 1
4 4 C 1.34777 * 119.99725 * 89.99718 * 3 2 1
5 5 O 1.21638 * 119.99630 * 179.97438 * 4 3 2
6 6 C 1.47169 * 120.00269 * 0.02562 * 4 3 2
7 7 C 1.41393 * 126.45845 * 269.99646 * 6 4 3
8 8 C 1.50703 * 125.96565 * 0.02562 * 7 6 4
9 9 N 1.30369 * 108.06808 * 179.74579 * 7 6 4
10 10 N 1.39916 * 109.02296 * 0.23251 * 9 7 6
11 11 C 1.46506 * 125.74555 * 180.02562 * 10 9 7
12 12 C 1.34410 * 108.51427 * 359.97438 * 10 9 7
13 13 F 1.35103 * 126.34653 * 180.02562 * 12 10 9
14 14 C 1.46494 * 120.00409 * 269.99565 * 3 2 1
15 15 H 1.09004 * 110.88257 * 356.12396 * 14 3 2
16 16 C 1.55161 * 111.00531 * 119.99939 * 14 3 2
17 17 C 1.54324 * 102.93985 * 153.58037 * 16 14 3
18 18 N 1.47020 * 107.27566 * 337.80781 * 17 16 14
19 19 C 1.36929 * 125.65271 * 178.98558 * 18 17 16
20 20 H 1.08002 * 120.00483 * 179.97438 * 19 18 17
21 21 C 1.38815 * 120.00075 * 359.97438 * 19 18 17
22 22 N 1.31621 * 119.99647 * 0.02562 * 21 19 18
23 23 Si 1.86793 * 120.00119 * 179.97438 * 21 19 18
24 24 H 1.48495 * 109.47199 * 359.97438 * 23 21 19
25 25 H 1.48501 * 109.47384 * 120.00348 * 23 21 19
26 26 H 1.48509 * 109.47046 * 239.99852 * 23 21 19
27 27 C 1.47435 * 108.69878 * 358.94109 * 18 17 16
28 28 H 1.08998 * 109.47623 * 299.99938 * 1 2 3
29 29 H 1.09002 * 109.46754 * 59.99955 * 1 2 3
30 30 H 1.08996 * 109.47022 * 179.97438 * 1 2 3
31 31 H 1.08995 * 109.46907 * 240.00181 * 2 1 3
32 32 H 1.09001 * 109.46777 * 119.99492 * 2 1 3
33 33 H 1.09002 * 109.47152 * 269.71237 * 8 7 6
34 34 H 1.09001 * 109.46980 * 149.71338 * 8 7 6
35 35 H 1.09004 * 109.47113 * 29.71319 * 8 7 6
36 36 H 1.09000 * 109.46932 * 89.96638 * 11 10 9
37 37 H 1.08991 * 109.47047 * 209.96944 * 11 10 9
38 38 H 1.09001 * 109.46762 * 329.97252 * 11 10 9
39 39 H 1.08993 * 110.72145 * 271.94580 * 16 14 3
40 40 H 1.08995 * 110.71658 * 35.21883 * 16 14 3
41 41 H 1.09000 * 109.88042 * 97.22816 * 17 16 14
42 42 H 1.08999 * 109.87990 * 218.39297 * 17 16 14
43 43 H 0.96999 * 119.99609 * 180.02562 * 22 21 19
44 44 H 1.08994 * 110.37050 * 265.28660 * 27 18 17
45 45 H 1.09007 * 110.36336 * 142.96302 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2428 2.0166 1.1672
5 8 2.6487 3.1633 1.1672
6 6 1.9981 1.3226 2.4418
7 6 0.7860 1.3051 3.1696
8 6 -0.4932 1.9976 2.7755
9 7 0.9665 0.5803 4.2382
10 7 2.2836 0.1085 4.2521
11 6 2.8774 -0.7415 5.2871
12 6 2.9123 0.5655 3.1554
13 9 4.1965 0.3264 2.8106
14 6 2.2625 2.0719 -1.2686
15 1 2.0990 1.4025 -2.1132
16 6 1.3815 3.3435 -1.3882
17 6 2.2023 4.2448 -2.3346
18 7 3.5996 3.7929 -2.2652
19 6 4.6455 4.3218 -2.9731
20 1 5.6396 3.9177 -2.8509
21 6 4.4283 5.3773 -3.8481
22 7 3.2169 5.8701 -3.9968
23 14 5.8553 6.0993 -4.8133
24 1 7.1041 5.3741 -4.4674
25 1 5.5891 5.9617 -6.2678
26 1 6.0072 7.5365 -4.4717
27 6 3.6882 2.6766 -1.3062
28 1 -0.3634 0.5138 0.8899
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 1.8933 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8901
33 1 -0.5076 3.0022 3.1983
34 1 -1.3443 1.4317 3.1544
35 1 -0.5528 2.0598 1.6889
36 1 2.7298 -1.7893 5.0255
37 1 3.9445 -0.5323 5.3610
38 1 2.3994 -0.5353 6.2448
39 1 0.4139 3.1024 -1.8281
40 1 1.2564 3.8188 -0.4153
41 1 1.8310 4.1463 -3.3547
42 1 2.1321 5.2833 -2.0110
43 1 3.0650 6.6074 -4.6085
44 1 3.9700 3.0451 -0.3199
45 1 4.4062 1.9338 -1.6540
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001034031500.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:40:00
Heat of formation + Delta-G solvation = 45.603582 kcal
Electronic energy + Delta-G solvation = -29037.871781 eV
Core-core repulsion = 25008.568585 eV
Total energy + Delta-G solvation = -4029.303195 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 324.170 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-49.45816 -41.62615 -39.67991 -36.66069 -35.44213 -34.37630 -32.29470 -30.76870
-30.21242 -29.69332 -28.87278 -27.18743 -26.06374 -24.37838 -23.64106 -22.20651
-21.07560 -20.60743 -19.93943 -19.01264 -17.64248 -17.12019 -16.77751 -16.74083
-16.19775 -15.63977 -14.92868 -14.84170 -14.47048 -14.38006 -14.11310 -13.87603
-13.68528 -13.62056 -13.52205 -13.12303 -12.94702 -12.77129 -12.56130 -12.39247
-12.13629 -11.91311 -11.71436 -11.64491 -11.11210 -11.08598 -10.81674 -10.78267
-10.55242 -10.24693 -9.97625 -9.83669 -9.56866 -9.55624 -9.18777 -8.80901
-8.50594 -8.25856 -6.63991 -5.57991 -2.89836 1.16538 1.68175 2.08614
2.73001 3.24867 3.48051 3.53387 3.56003 3.63223 4.09252 4.51608
4.62002 4.68032 4.73577 4.83989 4.92913 4.96136 5.06661 5.19464
5.35242 5.40822 5.49984 5.53612 5.59138 5.61515 5.66532 5.72252
5.81201 5.90888 5.98212 6.07628 6.22760 6.32370 6.45597 6.58691
6.68345 6.77495 6.82913 7.14326 7.32663 7.65662 7.71803 7.80744
7.96555 8.39031 8.48365 9.35880 9.96286 10.63623 11.53895
Molecular weight = 324.17amu
Principal moments of inertia in cm(-1)
A = 0.020673 B = 0.003455 C = 0.003235
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1354.101742 B = 8102.429113 C = 8653.128127
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.111 3.889
3 N -0.594 5.594
4 C 0.590 3.410
5 O -0.502 6.502
6 C -0.275 4.275
7 C 0.133 3.867
8 C -0.083 4.083
9 N -0.273 5.273
10 N -0.377 5.377
11 C 0.094 3.906
12 C 0.287 3.713
13 F -0.087 7.087
14 C 0.132 3.868
15 H 0.092 0.908
16 C -0.152 4.152
17 C 0.185 3.815
18 N -0.602 5.602
19 C -0.220 4.220
20 H 0.077 0.923
21 C -0.011 4.011
22 N -0.923 5.923
23 Si 0.911 3.089
24 H -0.281 1.281
25 H -0.292 1.292
26 H -0.291 1.291
27 C 0.123 3.877
28 H 0.063 0.937
29 H 0.063 0.937
30 H 0.062 0.938
31 H 0.079 0.921
32 H 0.067 0.933
33 H 0.088 0.912
34 H 0.082 0.918
35 H 0.088 0.912
36 H 0.082 0.918
37 H 0.091 0.909
38 H 0.099 0.901
39 H 0.055 0.945
40 H 0.072 0.928
41 H 0.044 0.956
42 H 0.042 0.958
43 H 0.250 0.750
44 H 0.049 0.951
45 H 0.031 0.969
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.681 -17.372 16.693 25.287
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C -0.013 4.013
3 N -0.327 5.327
4 C 0.375 3.625
5 O -0.376 6.376
6 C -0.291 4.291
7 C -0.034 4.034
8 C -0.142 4.142
9 N -0.096 5.096
10 N -0.162 5.162
11 C -0.047 4.047
12 C 0.140 3.860
13 F -0.067 7.067
14 C 0.028 3.972
15 H 0.110 0.890
16 C -0.191 4.191
17 C 0.060 3.940
18 N -0.329 5.329
19 C -0.349 4.349
20 H 0.095 0.905
21 C -0.207 4.207
22 N -0.571 5.571
23 Si 0.742 3.258
24 H -0.206 1.206
25 H -0.219 1.219
26 H -0.219 1.219
27 C -0.004 4.004
28 H 0.082 0.918
29 H 0.082 0.918
30 H 0.081 0.919
31 H 0.097 0.903
32 H 0.086 0.914
33 H 0.107 0.893
34 H 0.101 0.899
35 H 0.106 0.894
36 H 0.101 0.899
37 H 0.109 0.891
38 H 0.118 0.882
39 H 0.074 0.926
40 H 0.091 0.909
41 H 0.062 0.938
42 H 0.060 0.940
43 H 0.060 0.940
44 H 0.067 0.933
45 H 0.049 0.951
Dipole moment (debyes) X Y Z Total
from point charges -7.804 -17.152 17.668 25.831
hybrid contribution 1.564 0.405 -1.166 1.993
sum -6.240 -16.747 16.502 24.325
Atomic orbital electron populations
1.22361 0.95933 1.02052 1.03140 1.21455 0.94563 0.82742 1.02516
1.47919 1.65205 1.13728 1.05800 1.17038 0.77952 0.85597 0.81935
1.90869 1.43156 1.16849 1.86680 1.19841 0.94812 1.12403 1.02080
1.22147 0.95302 0.95132 0.90792 1.20456 0.90631 1.00127 1.02958
1.77278 0.92383 1.18377 1.21548 1.48632 1.08968 1.40781 1.17842
1.22039 0.98848 0.93590 0.90182 1.17799 0.79812 0.98285 0.90103
1.91674 1.31933 1.92754 1.90305 1.22443 0.98221 0.93612 0.82899
0.88957 1.23227 0.97781 0.96325 1.01782 1.21049 0.82462 0.95047
0.95439 1.44327 1.05084 1.36046 1.47425 1.19100 0.87775 1.11801
1.16174 0.90543 1.24779 0.96778 0.98903 1.00252 1.69984 1.18806
1.28145 1.40157 0.86050 0.81375 0.78851 0.79554 1.20604 1.21895
1.21854 1.21936 0.92645 0.90586 0.95246 0.91846 0.91786 0.91932
0.90270 0.91437 0.89306 0.89943 0.89376 0.89900 0.89076 0.88230
0.92612 0.90911 0.93793 0.93978 0.93975 0.93298 0.95105
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.68 10.24 37.16 0.38 -1.30 16
2 C 0.11 1.25 5.95 -4.04 -0.02 1.23 16
3 N -0.59 -9.16 2.56 -165.02 -0.42 -9.58 16
4 C 0.59 10.09 6.49 -12.63 -0.08 10.01 16
5 O -0.50 -10.89 13.15 5.24 0.07 -10.82 16
6 C -0.28 -3.91 4.12 -104.97 -0.43 -4.34 16
7 C 0.13 1.62 6.77 -82.01 -0.56 1.07 16
8 C -0.08 -0.80 9.44 36.01 0.34 -0.46 16
9 N -0.27 -3.22 12.49 33.90 0.42 -2.80 16
10 N -0.38 -4.03 3.98 -67.94 -0.27 -4.30 16
11 C 0.09 0.54 11.43 59.85 0.68 1.23 16
12 C 0.29 3.69 8.37 -16.32 -0.14 3.56 16
13 F -0.09 -1.14 17.31 2.25 0.04 -1.10 16
14 C 0.13 2.44 3.55 -65.79 -0.23 2.21 16
15 H 0.09 1.58 7.86 -51.93 -0.41 1.18 16
16 C -0.15 -3.08 6.33 -24.89 -0.16 -3.24 16
17 C 0.19 4.79 5.37 -3.07 -0.02 4.78 16
18 N -0.60 -16.51 3.39 -170.07 -0.58 -17.09 16
19 C -0.22 -6.49 10.28 -15.06 -0.15 -6.64 16
20 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16
21 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16
22 N -0.92 -28.18 10.31 55.49 0.57 -27.61 16
23 Si 0.91 23.02 29.55 -169.99 -5.02 17.99 16
24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
25 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16
26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16
27 C 0.12 2.83 6.58 -2.53 -0.02 2.81 16
28 H 0.06 0.61 4.56 -51.93 -0.24 0.37 16
29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16
31 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16
32 H 0.07 0.73 6.63 -51.93 -0.34 0.39 16
33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
35 H 0.09 0.87 6.19 -51.93 -0.32 0.55 16
36 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16
37 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16
38 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16
39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
40 H 0.07 1.55 6.25 -51.93 -0.32 1.23 16
41 H 0.04 1.22 7.38 -51.93 -0.38 0.83 16
42 H 0.04 1.23 7.50 -51.93 -0.39 0.84 16
43 H 0.25 7.37 8.31 -40.82 -0.34 7.04 16
44 H 0.05 1.23 5.53 -51.93 -0.29 0.95 16
45 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16
LS Contribution 363.73 15.07 5.48 5.48
Total: -1.00 -35.96 363.73 -6.67 -42.63
By element:
Atomic # 1 Polarization: 3.18 SS G_CDS: -6.46 Total: -3.27 kcal
Atomic # 6 Polarization: 10.97 SS G_CDS: -0.50 Total: 10.47 kcal
Atomic # 7 Polarization: -61.10 SS G_CDS: -0.27 Total: -61.38 kcal
Atomic # 8 Polarization: -10.89 SS G_CDS: 0.07 Total: -10.82 kcal
Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal
Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 17.99 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -35.96 -6.67 -42.63 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001034031500.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.235 kcal
(2) G-P(sol) polarization free energy of solvation -35.963 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.272 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.631 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.604 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds