Wall clock time and date at job start Tue Mar 31 2020 15:39:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 N 1.46502 * 109.46779 * 2 1
4 4 C 1.34777 * 119.99725 * 89.99718 * 3 2 1
5 5 O 1.21638 * 119.99630 * 179.97438 * 4 3 2
6 6 C 1.47169 * 120.00269 * 0.02562 * 4 3 2
7 7 C 1.41393 * 126.45845 * 269.99646 * 6 4 3
8 8 C 1.50703 * 125.96565 * 0.02562 * 7 6 4
9 9 N 1.30369 * 108.06808 * 179.74579 * 7 6 4
10 10 N 1.39916 * 109.02296 * 0.23251 * 9 7 6
11 11 C 1.46506 * 125.74555 * 180.02562 * 10 9 7
12 12 C 1.34410 * 108.51427 * 359.97438 * 10 9 7
13 13 F 1.35103 * 126.34653 * 180.02562 * 12 10 9
14 14 C 1.46494 * 120.00409 * 269.99565 * 3 2 1
15 15 H 1.09004 * 110.88257 * 356.12396 * 14 3 2
16 16 C 1.55161 * 111.00531 * 119.99939 * 14 3 2
17 17 C 1.54324 * 102.93985 * 153.58037 * 16 14 3
18 18 N 1.47020 * 107.27566 * 337.80781 * 17 16 14
19 19 C 1.36929 * 125.65271 * 178.98558 * 18 17 16
20 20 H 1.08002 * 120.00483 * 179.97438 * 19 18 17
21 21 C 1.38815 * 120.00075 * 359.97438 * 19 18 17
22 22 N 1.31621 * 119.99647 * 0.02562 * 21 19 18
23 23 Si 1.86793 * 120.00119 * 179.97438 * 21 19 18
24 24 H 1.48495 * 109.47199 * 359.97438 * 23 21 19
25 25 H 1.48501 * 109.47384 * 120.00348 * 23 21 19
26 26 H 1.48509 * 109.47046 * 239.99852 * 23 21 19
27 27 C 1.47435 * 108.69878 * 358.94109 * 18 17 16
28 28 H 1.08998 * 109.47623 * 299.99938 * 1 2 3
29 29 H 1.09002 * 109.46754 * 59.99955 * 1 2 3
30 30 H 1.08996 * 109.47022 * 179.97438 * 1 2 3
31 31 H 1.08995 * 109.46907 * 240.00181 * 2 1 3
32 32 H 1.09001 * 109.46777 * 119.99492 * 2 1 3
33 33 H 1.09002 * 109.47152 * 269.71237 * 8 7 6
34 34 H 1.09001 * 109.46980 * 149.71338 * 8 7 6
35 35 H 1.09004 * 109.47113 * 29.71319 * 8 7 6
36 36 H 1.09000 * 109.46932 * 89.96638 * 11 10 9
37 37 H 1.08991 * 109.47047 * 209.96944 * 11 10 9
38 38 H 1.09001 * 109.46762 * 329.97252 * 11 10 9
39 39 H 1.08993 * 110.72145 * 271.94580 * 16 14 3
40 40 H 1.08995 * 110.71658 * 35.21883 * 16 14 3
41 41 H 1.09000 * 109.88042 * 97.22816 * 17 16 14
42 42 H 1.08999 * 109.87990 * 218.39297 * 17 16 14
43 43 H 0.96999 * 119.99609 * 180.02562 * 22 21 19
44 44 H 1.08994 * 110.37050 * 265.28660 * 27 18 17
45 45 H 1.09007 * 110.36336 * 142.96302 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2428 2.0166 1.1672
5 8 2.6487 3.1633 1.1672
6 6 1.9981 1.3226 2.4418
7 6 0.7860 1.3051 3.1696
8 6 -0.4932 1.9976 2.7755
9 7 0.9665 0.5803 4.2382
10 7 2.2836 0.1085 4.2521
11 6 2.8774 -0.7415 5.2871
12 6 2.9123 0.5655 3.1554
13 9 4.1965 0.3264 2.8106
14 6 2.2625 2.0719 -1.2686
15 1 2.0990 1.4025 -2.1132
16 6 1.3815 3.3435 -1.3882
17 6 2.2023 4.2448 -2.3346
18 7 3.5996 3.7929 -2.2652
19 6 4.6455 4.3218 -2.9731
20 1 5.6396 3.9177 -2.8509
21 6 4.4283 5.3773 -3.8481
22 7 3.2169 5.8701 -3.9968
23 14 5.8553 6.0993 -4.8133
24 1 7.1041 5.3741 -4.4674
25 1 5.5891 5.9617 -6.2678
26 1 6.0072 7.5365 -4.4717
27 6 3.6882 2.6766 -1.3062
28 1 -0.3634 0.5138 0.8899
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 1.8933 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8901
33 1 -0.5076 3.0022 3.1983
34 1 -1.3443 1.4317 3.1544
35 1 -0.5528 2.0598 1.6889
36 1 2.7298 -1.7893 5.0255
37 1 3.9445 -0.5323 5.3610
38 1 2.3994 -0.5353 6.2448
39 1 0.4139 3.1024 -1.8281
40 1 1.2564 3.8188 -0.4153
41 1 1.8310 4.1463 -3.3547
42 1 2.1321 5.2833 -2.0110
43 1 3.0650 6.6074 -4.6085
44 1 3.9700 3.0451 -0.3199
45 1 4.4062 1.9338 -1.6540
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001034031500.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:39:59
Heat of formation + Delta-G solvation = 21.587783 kcal
Electronic energy + Delta-G solvation = -29038.913184 eV
Core-core repulsion = 25008.568585 eV
Total energy + Delta-G solvation = -4030.344599 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 324.170 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-50.45766 -42.58004 -41.04268 -38.42998 -36.77719 -35.23611 -34.25167 -31.69489
-31.65653 -30.64309 -30.46089 -28.78093 -27.10871 -26.28588 -24.67317 -23.27199
-22.40023 -21.94760 -21.66725 -20.20446 -18.95182 -18.61127 -18.04557 -17.86250
-17.15228 -17.04428 -16.69320 -16.15640 -15.76150 -15.75317 -15.41818 -15.03230
-14.80178 -14.52884 -14.37677 -14.29154 -14.22694 -14.11184 -13.73399 -13.62680
-13.37095 -13.26534 -13.05067 -12.88074 -12.79129 -12.60254 -12.26229 -12.11273
-11.98093 -11.95771 -11.93791 -11.77244 -11.50315 -10.70544 -10.68619 -10.40541
-9.82337 -9.66817 -8.83496 -7.83211 -5.18877 0.21632 0.87731 1.13021
1.44258 1.45581 1.47415 1.57574 2.00559 2.51460 2.74817 3.22273
3.34333 3.65359 3.73846 3.76640 3.94425 4.04701 4.09177 4.16120
4.23757 4.28184 4.31888 4.44093 4.54550 4.59501 4.65842 4.68289
4.73159 4.76821 4.86064 4.91344 4.95665 5.04427 5.06093 5.19068
5.27898 5.43894 5.48013 5.62572 5.68416 5.71766 5.78666 6.20619
6.24712 6.42982 7.11032 7.17973 7.77852 8.43873 9.27419
Molecular weight = 324.17amu
Principal moments of inertia in cm(-1)
A = 0.020673 B = 0.003455 C = 0.003235
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1354.101742 B = 8102.429113 C = 8653.128127
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.105 3.895
3 N -0.587 5.587
4 C 0.592 3.408
5 O -0.559 6.559
6 C -0.298 4.298
7 C 0.133 3.867
8 C -0.084 4.084
9 N -0.275 5.275
10 N -0.365 5.365
11 C 0.081 3.919
12 C 0.283 3.717
13 F -0.091 7.091
14 C 0.152 3.848
15 H 0.117 0.883
16 C -0.134 4.134
17 C 0.195 3.805
18 N -0.623 5.623
19 C -0.243 4.243
20 H 0.078 0.922
21 C -0.067 4.067
22 N -0.951 5.951
23 Si 0.982 3.018
24 H -0.267 1.267
25 H -0.286 1.286
26 H -0.294 1.294
27 C 0.119 3.881
28 H 0.061 0.939
29 H 0.059 0.941
30 H 0.087 0.913
31 H 0.095 0.905
32 H 0.075 0.925
33 H 0.088 0.912
34 H 0.107 0.893
35 H 0.084 0.916
36 H 0.106 0.894
37 H 0.103 0.897
38 H 0.115 0.885
39 H 0.089 0.911
40 H 0.060 0.940
41 H 0.021 0.979
42 H -0.005 1.005
43 H 0.247 0.753
44 H 0.027 0.973
45 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.273 -20.065 17.591 27.938
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C -0.016 4.016
3 N -0.318 5.318
4 C 0.379 3.621
5 O -0.437 6.437
6 C -0.315 4.315
7 C -0.033 4.033
8 C -0.142 4.142
9 N -0.098 5.098
10 N -0.150 5.150
11 C -0.057 4.057
12 C 0.135 3.865
13 F -0.071 7.071
14 C 0.047 3.953
15 H 0.135 0.865
16 C -0.173 4.173
17 C 0.070 3.930
18 N -0.349 5.349
19 C -0.372 4.372
20 H 0.096 0.904
21 C -0.260 4.260
22 N -0.600 5.600
23 Si 0.810 3.190
24 H -0.192 1.192
25 H -0.212 1.212
26 H -0.221 1.221
27 C -0.007 4.007
28 H 0.080 0.920
29 H 0.078 0.922
30 H 0.106 0.894
31 H 0.114 0.886
32 H 0.094 0.906
33 H 0.106 0.894
34 H 0.126 0.874
35 H 0.102 0.898
36 H 0.124 0.876
37 H 0.122 0.878
38 H 0.134 0.866
39 H 0.107 0.893
40 H 0.079 0.921
41 H 0.039 0.961
42 H 0.014 0.986
43 H 0.056 0.944
44 H 0.045 0.955
45 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges -8.414 -19.931 18.608 28.537
hybrid contribution 1.793 1.187 -1.336 2.532
sum -6.621 -18.744 17.272 26.335
Atomic orbital electron populations
1.22322 0.94121 1.03639 1.02900 1.21773 0.96012 0.80095 1.03740
1.47936 1.64541 1.15118 1.04175 1.17447 0.76563 0.84918 0.83169
1.90844 1.45805 1.19481 1.87595 1.19635 0.96392 1.13880 1.01563
1.22410 0.95403 0.95087 0.90389 1.20550 0.90527 1.00294 1.02818
1.77265 0.92961 1.18390 1.21194 1.49003 1.08395 1.40032 1.17587
1.22509 0.99575 0.94046 0.89605 1.17785 0.79533 0.98428 0.90794
1.91662 1.32168 1.92782 1.90465 1.22104 0.94402 0.93495 0.85283
0.86475 1.23007 0.98583 0.95940 0.99810 1.20785 0.83010 0.93943
0.95307 1.44638 1.05217 1.37325 1.47765 1.19480 0.88649 1.12413
1.16647 0.90385 1.25685 0.99575 0.99293 1.01430 1.70209 1.20797
1.28346 1.40609 0.84958 0.78582 0.77542 0.77917 1.19151 1.21233
1.22074 1.22000 0.95956 0.89688 0.93032 0.91971 0.92178 0.89401
0.88627 0.90631 0.89381 0.87422 0.89750 0.87604 0.87816 0.86642
0.89260 0.92116 0.96088 0.98641 0.94358 0.95542 0.94510
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.71 10.24 71.98 0.74 -1.97 16
2 C 0.11 2.10 5.95 86.38 0.51 2.61 16
3 N -0.59 -17.45 2.56 -794.25 -2.03 -19.48 16
4 C 0.59 20.30 6.49 86.59 0.56 20.86 16
5 O -0.56 -25.24 13.15 -4.15 -0.05 -25.29 16
6 C -0.30 -8.23 4.12 -20.09 -0.08 -8.31 16
7 C 0.13 3.04 6.77 43.55 0.29 3.34 16
8 C -0.08 -1.48 9.44 71.24 0.67 -0.81 16
9 N -0.27 -5.88 12.49 -46.65 -0.58 -6.46 16
10 N -0.37 -6.98 3.98 -368.85 -1.47 -8.45 16
11 C 0.08 0.70 11.43 127.77 1.46 2.16 16
12 C 0.28 6.93 8.37 84.36 0.71 7.64 16
13 F -0.09 -2.31 17.31 44.97 0.78 -1.53 16
14 C 0.15 5.52 3.55 46.38 0.16 5.68 16
15 H 0.12 3.74 7.86 -2.38 -0.02 3.72 16
16 C -0.13 -5.49 6.33 31.78 0.20 -5.29 16
17 C 0.19 10.52 5.37 86.73 0.47 10.99 16
18 N -0.62 -35.31 3.39 -691.98 -2.35 -37.66 16
19 C -0.24 -14.72 10.28 84.04 0.86 -13.85 16
20 H 0.08 4.56 7.83 -2.91 -0.02 4.53 16
21 C -0.07 -4.04 5.49 84.86 0.47 -3.58 16
22 N -0.95 -60.07 10.31 21.65 0.22 -59.84 16
23 Si 0.98 48.15 29.55 68.60 2.03 50.18 16
24 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16
25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16
26 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16
27 C 0.12 5.62 6.58 86.85 0.57 6.19 16
28 H 0.06 1.01 4.56 -2.39 -0.01 1.00 16
29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16
31 H 0.10 1.62 7.93 -2.39 -0.02 1.61 16
32 H 0.08 1.43 6.63 -2.39 -0.02 1.42 16
33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16
34 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16
35 H 0.08 1.56 6.19 -2.38 -0.01 1.54 16
36 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16
37 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16
38 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16
39 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16
40 H 0.06 2.65 6.25 -2.39 -0.01 2.64 16
41 H 0.02 1.21 7.38 -2.39 -0.02 1.19 16
42 H 0.00 -0.29 7.50 -2.39 -0.02 -0.31 16
43 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16
44 H 0.03 1.40 5.53 -2.39 -0.01 1.39 16
45 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16
Total: -1.00 -82.13 363.73 5.15 -76.98
By element:
Atomic # 1 Polarization: 4.88 SS G_CDS: 1.01 Total: 5.89 kcal
Atomic # 6 Polarization: 18.07 SS G_CDS: 7.60 Total: 25.66 kcal
Atomic # 7 Polarization: -125.69 SS G_CDS: -6.21 Total: -131.90 kcal
Atomic # 8 Polarization: -25.24 SS G_CDS: -0.05 Total: -25.29 kcal
Atomic # 9 Polarization: -2.31 SS G_CDS: 0.78 Total: -1.53 kcal
Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.18 kcal
Total: -82.13 5.15 -76.98 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001034031500.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.571 kcal
(2) G-P(sol) polarization free energy of solvation -82.129 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.442 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.145 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.983 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.588 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds