Wall clock time and date at job start Tue Mar 31 2020 13:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.57875 * 2 1 4 4 O 1.43075 * 109.52307 * 239.83674 * 2 1 3 5 5 C 1.43080 * 113.59389 * 182.14853 * 4 2 1 6 6 C 1.53147 * 109.14826 * 57.94890 * 5 4 2 7 7 O 1.43070 * 109.15120 * 304.69075 * 6 5 4 8 8 C 1.43066 * 113.59540 * 57.95736 * 7 6 5 9 9 H 1.09000 * 109.53008 * 182.07799 * 8 7 6 10 10 C 1.50695 * 109.52867 * 61.94397 * 8 7 6 11 11 O 1.21282 * 120.00115 * 335.33460 * 10 8 7 12 12 N 1.34781 * 120.00317 * 155.33195 * 10 8 7 13 13 C 1.47852 * 122.22757 * 354.33378 * 12 10 8 14 14 C 1.52242 * 111.33054 * 232.41946 * 13 12 10 15 15 C 1.53871 * 111.58473 * 311.75087 * 14 13 12 16 16 C 1.51080 * 107.34183 * 56.76295 * 15 14 13 17 17 H 1.08993 * 108.30308 * 51.23196 * 16 15 14 18 18 C 1.45726 * 122.22966 * 174.61867 * 12 10 8 19 19 H 1.08994 * 111.07204 * 240.53105 * 18 12 10 20 20 C 1.53433 * 116.37023 * 9.03628 * 18 12 10 21 21 C 1.55466 * 101.67173 * 152.71516 * 20 18 12 22 22 N 1.45574 * 120.04501 * 175.88338 * 16 15 14 23 23 C 1.36931 * 126.07044 * 330.96554 * 22 16 15 24 24 H 1.08000 * 119.99716 * 359.13840 * 23 22 16 25 25 C 1.38811 * 120.00417 * 179.13428 * 23 22 16 26 26 N 1.31626 * 119.99708 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00079 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47627 * 90.00318 * 27 25 23 29 29 H 1.48510 * 109.46805 * 210.00090 * 27 25 23 30 30 H 1.48499 * 109.47114 * 329.99380 * 27 25 23 31 31 H 1.09000 * 109.47422 * 304.64845 * 1 2 3 32 32 H 1.09007 * 109.47127 * 64.64035 * 1 2 3 33 33 H 1.08996 * 109.47608 * 184.64327 * 1 2 3 34 34 H 1.08999 * 109.52189 * 298.05254 * 5 4 2 35 35 H 1.08989 * 109.52362 * 177.85520 * 5 4 2 36 36 H 1.09006 * 109.52108 * 184.78549 * 6 5 4 37 37 H 1.09002 * 109.51950 * 64.59428 * 6 5 4 38 38 H 1.08998 * 109.15823 * 352.89026 * 13 12 10 39 39 H 1.09004 * 109.16169 * 112.06720 * 13 12 10 40 40 H 1.08994 * 109.16766 * 191.11819 * 14 13 12 41 41 H 1.09008 * 108.90857 * 72.20640 * 14 13 12 42 42 H 1.09009 * 109.88279 * 297.30300 * 15 14 13 43 43 H 1.09000 * 109.94500 * 176.25957 * 15 14 13 44 44 H 1.09001 * 110.98657 * 270.81210 * 20 18 12 45 45 H 1.09002 * 110.98621 * 34.61824 * 20 18 12 46 46 H 1.09007 * 109.96310 * 96.78140 * 21 20 18 47 47 H 1.09003 * 109.96349 * 217.98163 * 21 20 18 48 48 H 0.96995 * 119.99493 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 8 2.0081 -0.6776 -1.1659 5 6 3.4344 -0.7713 -1.2293 6 6 3.9462 -1.4965 0.0187 7 8 3.4680 -0.8189 1.1845 8 6 2.0418 -0.7253 1.2479 9 1 1.7525 -0.1678 2.1388 10 6 1.4482 -2.1093 1.3050 11 8 2.0655 -3.0528 0.8582 12 7 0.2313 -2.2986 1.8527 13 6 -0.5108 -1.2084 2.5210 14 6 -0.9558 -1.6169 3.9185 15 6 -1.6312 -2.9995 3.9160 16 6 -0.6472 -3.9802 3.3223 17 1 0.3030 -3.8705 3.8449 18 6 -0.4379 -3.5929 1.8310 19 1 -1.3870 -3.5345 1.2983 20 6 0.3977 -4.7841 1.3441 21 6 -0.2793 -5.9688 2.0891 22 7 -0.9727 -5.3982 3.2704 23 6 -1.7831 -6.0718 4.1448 24 1 -2.2359 -5.5485 4.9739 25 6 -2.0226 -7.4273 3.9655 26 7 -1.4704 -8.0652 2.9552 27 14 -3.1287 -8.3461 5.1579 28 1 -4.5322 -8.2879 4.6764 29 1 -2.6936 -9.7633 5.2449 30 1 -3.0394 -7.7176 6.5004 31 1 -0.3634 0.5843 0.8454 32 1 -0.3634 0.4402 -0.9287 33 1 -0.3634 -1.0242 0.0832 34 1 3.8637 0.2298 -1.2706 35 1 3.7236 -1.3297 -2.1195 36 1 5.0362 -1.4966 0.0187 37 1 3.5809 -2.5235 0.0186 38 1 0.1315 -0.3308 2.5940 39 1 -1.3905 -0.9584 1.9278 40 1 -1.6595 -0.8774 4.3004 41 1 -0.0838 -1.6477 4.5719 42 1 -2.5361 -2.9689 3.3090 43 1 -1.8788 -3.2941 4.9357 44 1 0.3147 -4.9037 0.2638 45 1 1.4402 -4.6785 1.6446 46 1 -1.0010 -6.4568 1.4339 47 1 0.4756 -6.6863 2.4107 48 1 -1.6381 -9.0123 2.8297 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049538685.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:57 Heat of formation + Delta-G solvation = -64.115893 kcal Electronic energy + Delta-G solvation = -30586.808004 eV Core-core repulsion = 26643.914569 eV Total energy + Delta-G solvation = -3942.893435 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.26599 -39.48432 -37.45350 -36.15784 -35.63035 -33.47355 -32.59756 -31.86717 -29.18710 -29.03520 -28.25037 -27.27124 -24.51297 -24.39796 -23.44209 -22.20053 -21.52941 -20.64604 -19.65650 -18.67981 -17.34014 -17.09132 -16.70689 -16.38643 -16.12042 -15.48389 -15.33140 -14.84243 -14.62227 -14.59382 -14.18579 -13.85860 -13.65415 -13.32120 -13.08530 -12.90729 -12.68550 -12.49309 -12.35376 -12.23102 -12.15803 -11.80434 -11.75293 -11.55371 -11.18368 -10.99283 -10.83101 -10.69007 -10.66172 -10.48561 -10.27846 -10.08505 -9.99640 -9.83249 -9.61062 -9.50925 -8.63781 -8.37314 -8.26202 -6.80721 -5.68072 -3.02254 2.64147 3.00411 3.41120 3.45895 3.48222 3.49342 3.59529 4.29108 4.32022 4.50030 4.60181 4.75233 4.88279 4.94417 4.97896 5.04919 5.14688 5.20554 5.25438 5.34470 5.36121 5.40639 5.56754 5.57584 5.61499 5.68970 5.73974 5.85658 5.93989 5.98146 6.02650 6.07347 6.25193 6.28308 6.39268 6.56168 6.71345 6.73718 6.82763 6.87438 6.90436 7.19634 7.59115 7.63789 7.69682 7.85924 8.26855 8.35060 9.21503 9.85011 10.52797 11.43854 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.023200 B = 0.003769 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.622899 B = 7426.724290 C = 8062.988826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.069 3.931 3 H 0.076 0.924 4 O -0.369 6.369 5 C 0.030 3.970 6 C -0.008 4.008 7 O -0.357 6.357 8 C 0.037 3.963 9 H 0.128 0.872 10 C 0.508 3.492 11 O -0.516 6.516 12 N -0.594 5.594 13 C 0.105 3.895 14 C -0.132 4.132 15 C -0.115 4.115 16 C 0.157 3.843 17 H 0.018 0.982 18 C 0.117 3.883 19 H 0.079 0.921 20 C -0.134 4.134 21 C 0.175 3.825 22 N -0.593 5.593 23 C -0.227 4.227 24 H 0.078 0.922 25 C -0.007 4.007 26 N -0.920 5.920 27 Si 0.910 3.090 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.055 0.945 47 H 0.039 0.961 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.408 20.187 -5.434 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.011 3.989 3 H 0.094 0.906 4 O -0.288 6.288 5 C -0.047 4.047 6 C -0.084 4.084 7 O -0.275 6.275 8 C -0.024 4.024 9 H 0.146 0.854 10 C 0.295 3.705 11 O -0.393 6.393 12 N -0.329 5.329 13 C -0.017 4.017 14 C -0.170 4.170 15 C -0.154 4.154 16 C 0.048 3.952 17 H 0.035 0.965 18 C 0.013 3.987 19 H 0.097 0.903 20 C -0.172 4.172 21 C 0.050 3.950 22 N -0.318 5.318 23 C -0.355 4.355 24 H 0.096 0.904 25 C -0.204 4.204 26 N -0.567 5.567 27 Si 0.740 3.260 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.208 1.208 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.133 0.867 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.106 0.894 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.714 19.434 -5.648 21.029 hybrid contribution -0.575 -0.441 0.678 0.993 sum 5.139 18.994 -4.969 20.294 Atomic orbital electron populations 1.22192 0.92014 1.04424 1.03292 1.22577 0.96298 0.95247 0.84795 0.90615 1.88145 1.21021 1.78365 1.41263 1.23212 0.81460 1.00305 0.99677 1.23896 0.99861 1.00467 0.84183 1.88138 1.17568 1.77885 1.43882 1.22944 0.83724 0.94805 1.00954 0.85426 1.20924 0.80975 0.90761 0.77801 1.90514 1.58954 1.42511 1.47352 1.48125 1.17473 1.11762 1.55504 1.21888 0.96506 0.89212 0.94127 1.21851 1.01000 0.98314 0.95883 1.21418 0.98797 0.93101 1.02074 1.20856 0.95703 0.86209 0.92417 0.96492 1.22428 0.95267 0.81682 0.99331 0.90308 1.23037 1.00496 0.94075 0.99612 1.21719 0.94743 0.91251 0.87271 1.44237 1.55881 1.01524 1.30129 1.18998 1.20833 0.91282 1.04405 0.90407 1.24801 1.00530 0.96624 0.98399 1.69952 1.47122 1.09052 1.30572 0.86157 0.80234 0.79313 0.80274 1.21659 1.21708 1.20751 0.90249 0.91024 0.90313 0.92858 0.87844 0.88365 0.86674 0.90499 0.90963 0.90687 0.91762 0.91763 0.91407 0.92261 0.89413 0.92714 0.94250 0.93749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 7.72 37.16 0.29 -1.20 16 2 C 0.07 0.75 3.15 -26.66 -0.08 0.66 16 3 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 4 O -0.37 -4.82 10.23 -48.80 -0.50 -5.32 16 5 C 0.03 0.33 7.05 37.23 0.26 0.59 16 6 C -0.01 -0.10 6.61 37.23 0.25 0.14 16 7 O -0.36 -4.91 10.62 -61.88 -0.66 -5.56 16 8 C 0.04 0.46 2.91 -27.81 -0.08 0.38 16 9 H 0.13 1.23 6.14 -51.93 -0.32 0.91 16 10 C 0.51 7.96 5.85 -10.99 -0.06 7.90 16 11 O -0.52 -9.76 10.19 -12.96 -0.13 -9.90 16 12 N -0.59 -8.87 2.02 -164.27 -0.33 -9.20 16 13 C 0.11 1.13 4.07 -3.69 -0.02 1.12 16 14 C -0.13 -1.55 5.90 -26.66 -0.16 -1.71 16 15 C -0.12 -1.90 5.50 -27.24 -0.15 -2.05 16 16 C 0.16 3.24 2.62 -68.07 -0.18 3.07 16 17 H 0.02 0.40 8.03 -51.93 -0.42 -0.02 16 18 C 0.12 2.18 3.29 -66.80 -0.22 1.96 16 19 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 20 C -0.13 -2.85 5.16 -25.20 -0.13 -2.98 16 21 C 0.17 4.43 5.48 -1.69 -0.01 4.43 16 22 N -0.59 -15.20 3.36 -162.89 -0.55 -15.74 16 23 C -0.23 -6.26 9.95 -15.06 -0.15 -6.41 16 24 H 0.08 2.05 7.35 -52.49 -0.39 1.67 16 25 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 26 N -0.92 -27.36 10.46 55.49 0.58 -26.77 16 27 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 31 H 0.08 0.51 6.51 -51.93 -0.34 0.17 16 32 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 33 H 0.08 0.91 5.39 -51.93 -0.28 0.63 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.97 8.14 -51.94 -0.42 0.54 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.12 1.78 5.01 -51.93 -0.26 1.52 16 38 H 0.08 0.61 4.76 -51.93 -0.25 0.36 16 39 H 0.07 0.67 7.11 -51.93 -0.37 0.30 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 42 H 0.06 1.06 8.12 -51.92 -0.42 0.63 16 43 H 0.07 1.18 7.74 -51.93 -0.40 0.78 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.09 1.97 5.97 -51.93 -0.31 1.66 16 46 H 0.05 1.51 7.19 -51.93 -0.37 1.14 16 47 H 0.04 1.10 7.81 -51.93 -0.41 0.70 16 48 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 347.23 15.07 5.23 5.23 Total: -1.00 -33.29 347.23 -9.39 -42.68 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.47 Total: 1.88 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -0.54 Total: 5.58 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.30 Total: -51.72 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -1.29 Total: -20.78 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.29 -9.39 -42.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049538685.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.436 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds