Wall clock time and date at job start Tue Mar 31 2020 14:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47022 * 2 1 4 4 C 1.50696 * 109.47353 * 239.99118 * 2 1 3 5 5 O 1.21273 * 120.00563 * 255.82677 * 4 2 1 6 6 N 1.34779 * 119.99401 * 75.83117 * 4 2 1 7 7 C 1.47127 * 121.04896 * 174.29129 * 6 4 2 8 8 C 1.53225 * 108.73126 * 232.23346 * 7 6 4 9 9 O 1.43111 * 109.34427 * 305.87982 * 8 7 6 10 10 C 1.42485 * 113.96800 * 59.96188 * 9 8 7 11 11 C 1.53439 * 113.81070 * 170.46025 * 10 9 8 12 12 N 1.47674 * 85.98335 * 268.76628 * 11 10 9 13 13 C 1.36936 * 134.45916 * 155.70484 * 12 11 10 14 14 H 1.08000 * 120.00335 * 177.35621 * 13 12 11 15 15 C 1.38815 * 120.00075 * 357.36262 * 13 12 11 16 16 N 1.31621 * 119.99867 * 8.06459 * 15 13 12 17 17 Si 1.86793 * 120.00210 * 188.06417 * 15 13 12 18 18 H 1.48500 * 109.47227 * 94.96545 * 17 15 13 19 19 H 1.48504 * 109.47190 * 214.96569 * 17 15 13 20 20 H 1.48504 * 109.47185 * 334.96793 * 17 15 13 21 21 C 1.47677 * 91.08667 * 335.70894 * 12 11 10 22 22 C 1.47337 * 121.05655 * 354.31612 * 6 4 2 23 23 C 1.53003 * 109.46886 * 119.99288 * 2 1 3 24 24 H 1.08999 * 109.82261 * 60.57029 * 23 2 1 25 25 C 1.54380 * 109.83331 * 299.59138 * 23 2 1 26 26 C 1.55306 * 102.25166 * 219.13195 * 25 23 2 27 27 C 1.54940 * 100.94561 * 34.13009 * 26 25 23 28 28 O 1.43235 * 109.83031 * 181.45714 * 23 2 1 29 29 H 1.08999 * 109.47023 * 63.92312 * 1 2 3 30 30 H 1.08997 * 109.47476 * 183.92345 * 1 2 3 31 31 H 1.09000 * 109.47483 * 303.92424 * 1 2 3 32 32 H 1.09000 * 109.59355 * 112.46156 * 7 6 4 33 33 H 1.09001 * 109.71998 * 352.08780 * 7 6 4 34 34 H 1.09006 * 109.49543 * 185.91935 * 8 7 6 35 35 H 1.09001 * 109.51351 * 65.85476 * 8 7 6 36 36 H 1.08996 * 113.79729 * 23.03552 * 11 10 9 37 37 H 1.08999 * 113.78807 * 154.50242 * 11 10 9 38 38 H 0.96994 * 120.00247 * 180.02562 * 16 15 13 39 39 H 1.08995 * 113.79389 * 270.02680 * 21 12 11 40 40 H 1.08993 * 113.79321 * 138.54997 * 21 12 11 41 41 H 1.08999 * 109.74559 * 11.95169 * 22 6 4 42 42 H 1.09005 * 109.74782 * 251.22710 * 22 6 4 43 43 H 1.09001 * 110.84502 * 337.31884 * 25 23 2 44 44 H 1.08990 * 110.85173 * 100.93514 * 25 23 2 45 45 H 1.08998 * 111.12140 * 276.20747 * 26 25 23 46 46 H 1.09000 * 111.15917 * 152.06895 * 26 25 23 47 47 H 1.08994 * 110.31237 * 204.64356 * 27 26 25 48 48 H 1.09008 * 110.39515 * 82.51235 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7106 -1.2303 5 8 2.4769 -1.8354 -1.1419 6 7 1.9876 -0.0958 -2.4289 7 6 2.5838 -0.7159 -3.6225 8 6 3.5292 0.2939 -4.2814 9 8 2.8215 1.5124 -4.5317 10 6 2.2956 2.1277 -3.3591 11 6 1.7426 3.5393 -3.5951 12 7 3.0979 4.0152 -3.2524 13 6 3.8198 5.1427 -3.5399 14 1 4.8069 5.2733 -3.1216 15 6 3.2827 6.1181 -4.3689 16 7 2.0255 6.0384 -4.7502 17 14 4.3443 7.5437 -4.9432 18 1 4.9178 7.2283 -6.2762 19 1 3.5144 8.7715 -5.0394 20 1 5.4446 7.7649 -3.9707 21 6 3.3630 2.7876 -2.4755 22 6 1.3405 1.2186 -2.5853 23 6 2.0399 -0.7211 1.2494 24 1 1.6881 -1.7528 1.2502 25 6 1.5383 0.0062 2.5154 26 6 2.7716 -0.0800 3.4554 27 6 3.9298 0.0219 2.4312 28 8 3.4718 -0.6960 1.2745 29 1 -0.3633 0.4517 -0.9230 30 1 -0.3634 -1.0252 0.0703 31 1 -0.3634 0.5735 0.8527 32 1 1.7960 -0.9906 -4.3239 33 1 3.1430 -1.6060 -3.3341 34 1 3.8971 -0.1131 -5.2233 35 1 4.3707 0.4919 -3.6174 36 1 1.4571 3.7326 -4.6291 37 1 0.9776 3.8374 -2.8781 38 1 1.6503 6.7196 -5.3297 39 1 3.0800 2.8620 -1.4255 40 1 4.3648 2.3834 -2.6200 41 1 1.1370 1.6479 -1.6043 42 1 0.4086 1.1067 -3.1396 43 1 1.2912 1.0445 2.2939 44 1 0.6835 -0.5132 2.9482 45 1 2.7970 -1.0331 3.9836 46 1 2.7917 0.7551 4.1556 47 1 4.8311 -0.4418 2.8320 48 1 4.1221 1.0645 2.1777 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053416096.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:46 Heat of formation + Delta-G solvation = -56.546629 kcal Electronic energy + Delta-G solvation = -29722.496918 eV Core-core repulsion = 25779.931711 eV Total energy + Delta-G solvation = -3942.565207 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.73001 -39.64276 -38.46763 -36.08887 -34.69665 -33.89623 -32.24825 -32.06812 -30.07291 -28.33185 -27.75837 -26.03574 -25.23181 -24.72608 -23.25349 -22.23035 -21.81527 -20.81029 -19.13647 -18.73180 -17.47871 -16.88606 -16.68957 -16.32147 -16.00053 -15.52962 -15.28569 -14.78690 -14.71055 -14.38814 -14.21852 -13.95732 -13.68392 -13.38005 -13.33155 -13.19487 -12.69514 -12.57599 -12.39159 -12.26951 -11.89970 -11.84123 -11.63200 -11.39900 -11.34655 -11.27707 -11.16524 -10.97582 -10.85366 -10.79246 -10.72457 -10.14873 -9.95448 -9.65871 -9.57371 -9.43458 -9.30182 -8.78923 -8.23232 -6.91441 -5.78613 -3.08352 2.75366 3.00081 3.40339 3.45447 3.47006 3.69677 4.09497 4.25166 4.37047 4.43606 4.54886 4.67836 4.89696 4.93474 4.96012 5.03538 5.07154 5.14192 5.20952 5.22642 5.28556 5.34808 5.45286 5.46040 5.49172 5.55287 5.58152 5.60706 5.65340 5.66171 5.76570 5.79058 5.87904 5.94491 6.02983 6.06257 6.26748 6.42941 6.48649 6.55002 6.91574 6.98325 7.15432 7.48219 7.49589 7.81873 7.97222 8.29238 9.03115 9.70033 10.55714 11.39596 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014725 B = 0.003754 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.089856 B = 7457.115944 C = 8351.470465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 H 0.100 0.900 4 C 0.530 3.470 5 O -0.538 6.538 6 N -0.612 5.612 7 C 0.080 3.920 8 C 0.046 3.954 9 O -0.336 6.336 10 C 0.053 3.947 11 C 0.182 3.818 12 N -0.600 5.600 13 C -0.222 4.222 14 H 0.080 0.920 15 C -0.004 4.004 16 N -0.920 5.920 17 Si 0.911 3.089 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.102 3.898 22 C 0.091 3.909 23 C 0.102 3.898 24 H 0.087 0.913 25 C -0.151 4.151 26 C -0.156 4.156 27 C 0.045 3.955 28 O -0.365 6.365 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.254 0.746 39 H 0.037 0.963 40 H 0.046 0.954 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.083 -13.767 12.664 19.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 H 0.118 0.882 4 C 0.319 3.681 5 O -0.415 6.415 6 N -0.347 5.347 7 C -0.042 4.042 8 C -0.032 4.032 9 O -0.254 6.254 10 C 0.010 3.990 11 C 0.056 3.944 12 N -0.326 5.326 13 C -0.350 4.350 14 H 0.097 0.903 15 C -0.200 4.200 16 N -0.567 5.567 17 Si 0.741 3.259 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.024 4.024 22 C -0.033 4.033 23 C 0.044 3.956 24 H 0.105 0.895 25 C -0.189 4.189 26 C -0.194 4.194 27 C -0.032 4.032 28 O -0.284 6.284 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.667 -14.060 12.220 18.985 hybrid contribution 0.462 0.984 0.087 1.091 sum -3.205 -13.076 12.307 18.240 Atomic orbital electron populations 1.21810 0.91994 1.03073 1.03461 1.21762 0.97810 1.01437 0.93614 0.88185 1.20350 0.77907 0.86066 0.83824 1.90658 1.46495 1.18722 1.85598 1.48186 1.57490 1.20690 1.08292 1.22229 0.97801 0.97369 0.86834 1.22901 0.94025 0.85339 1.00940 1.88042 1.71834 1.36463 1.29028 1.23724 0.94893 0.93245 0.87091 1.22210 0.88406 0.82261 1.01509 1.45772 1.12301 1.17560 1.57011 1.18978 0.97428 0.94516 1.24044 0.90254 1.24742 0.96270 0.98722 1.00312 1.69805 1.11748 1.36010 1.39092 0.86121 0.79288 0.81535 0.78917 1.21512 1.21737 1.20665 1.23026 0.97206 0.88054 0.94162 1.22495 0.96499 0.82407 1.01878 1.22527 0.81532 0.99345 0.92182 0.89472 1.23222 0.98766 1.01924 0.94953 1.23262 0.94693 1.03062 0.98348 1.23415 0.97274 0.97006 0.85457 1.88582 1.19582 1.75415 1.44797 0.91180 0.91797 0.91001 0.91000 0.88593 0.88118 0.92842 0.89906 0.93872 0.93589 0.94589 0.93602 0.88731 0.90527 0.90014 0.89816 0.90440 0.89900 0.89887 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.55 37.15 0.32 -1.00 16 2 C -0.12 -1.48 1.51 -91.77 -0.14 -1.61 16 3 H 0.10 1.21 7.01 -51.93 -0.36 0.84 16 4 C 0.53 8.00 6.69 -10.99 -0.07 7.93 16 5 O -0.54 -9.72 15.23 -1.64 -0.03 -9.75 16 6 N -0.61 -9.02 3.03 -172.44 -0.52 -9.54 16 7 C 0.08 1.14 6.57 -3.58 -0.02 1.11 16 8 C 0.05 0.71 6.88 37.27 0.26 0.96 16 9 O -0.34 -6.60 10.52 -35.23 -0.37 -6.97 16 10 C 0.05 0.99 1.21 -90.30 -0.11 0.88 16 11 C 0.18 4.15 6.89 -3.18 -0.02 4.13 16 12 N -0.60 -15.35 3.70 -180.27 -0.67 -16.02 16 13 C -0.22 -6.27 10.69 -15.06 -0.16 -6.43 16 14 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 15 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 16 N -0.92 -26.97 11.47 55.49 0.64 -26.34 16 17 Si 0.91 22.19 29.56 -169.99 -5.02 17.16 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.10 2.11 8.08 -3.16 -0.03 2.09 16 22 C 0.09 1.32 4.58 -3.64 -0.02 1.31 16 23 C 0.10 1.18 2.60 -26.01 -0.07 1.11 16 24 H 0.09 1.07 7.92 -51.93 -0.41 0.66 16 25 C -0.15 -1.23 5.53 -24.78 -0.14 -1.37 16 26 C -0.16 -1.22 7.16 -24.48 -0.18 -1.40 16 27 C 0.05 0.47 7.78 38.18 0.30 0.76 16 28 O -0.36 -5.14 10.43 -42.44 -0.44 -5.58 16 29 H 0.07 0.64 6.38 -51.93 -0.33 0.31 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.51 7.19 -51.93 -0.37 0.13 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.10 1.36 7.11 -51.93 -0.37 0.99 16 34 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.05 0.87 7.19 -51.93 -0.37 0.50 16 36 H 0.08 2.15 7.25 -51.93 -0.38 1.77 16 37 H 0.04 0.94 8.09 -51.93 -0.42 0.52 16 38 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.04 0.70 7.94 -51.93 -0.41 0.29 16 40 H 0.05 0.97 7.27 -51.93 -0.38 0.59 16 41 H 0.09 1.23 4.91 -51.93 -0.25 0.97 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.08 0.63 7.56 -51.93 -0.39 0.24 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 LS Contribution 370.72 15.07 5.59 5.59 Total: -1.00 -34.43 370.72 -8.81 -43.24 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -7.81 Total: -0.07 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -0.18 Total: 8.28 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.55 Total: -51.90 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.84 Total: -22.30 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.43 -8.81 -43.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053416096.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.307 kcal (2) G-P(sol) polarization free energy of solvation -34.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds