Wall clock time and date at job start Tue Mar 31 2020 14:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47022 * 2 1 4 4 C 1.50696 * 109.47353 * 239.99118 * 2 1 3 5 5 O 1.21273 * 120.00563 * 255.82677 * 4 2 1 6 6 N 1.34779 * 119.99401 * 75.83117 * 4 2 1 7 7 C 1.47127 * 121.04896 * 174.29129 * 6 4 2 8 8 C 1.53225 * 108.73126 * 232.23346 * 7 6 4 9 9 O 1.43111 * 109.34427 * 305.87982 * 8 7 6 10 10 C 1.42485 * 113.96800 * 59.96188 * 9 8 7 11 11 C 1.53439 * 113.81070 * 170.46025 * 10 9 8 12 12 N 1.47674 * 85.98335 * 268.76628 * 11 10 9 13 13 C 1.36936 * 134.45916 * 155.70484 * 12 11 10 14 14 H 1.08000 * 120.00335 * 177.35621 * 13 12 11 15 15 C 1.38815 * 120.00075 * 357.36262 * 13 12 11 16 16 N 1.31621 * 119.99867 * 8.06459 * 15 13 12 17 17 Si 1.86793 * 120.00210 * 188.06417 * 15 13 12 18 18 H 1.48500 * 109.47227 * 94.96545 * 17 15 13 19 19 H 1.48504 * 109.47190 * 214.96569 * 17 15 13 20 20 H 1.48504 * 109.47185 * 334.96793 * 17 15 13 21 21 C 1.47677 * 91.08667 * 335.70894 * 12 11 10 22 22 C 1.47337 * 121.05655 * 354.31612 * 6 4 2 23 23 C 1.53003 * 109.46886 * 119.99288 * 2 1 3 24 24 H 1.08999 * 109.82261 * 60.57029 * 23 2 1 25 25 C 1.54380 * 109.83331 * 299.59138 * 23 2 1 26 26 C 1.55306 * 102.25166 * 219.13195 * 25 23 2 27 27 C 1.54940 * 100.94561 * 34.13009 * 26 25 23 28 28 O 1.43235 * 109.83031 * 181.45714 * 23 2 1 29 29 H 1.08999 * 109.47023 * 63.92312 * 1 2 3 30 30 H 1.08997 * 109.47476 * 183.92345 * 1 2 3 31 31 H 1.09000 * 109.47483 * 303.92424 * 1 2 3 32 32 H 1.09000 * 109.59355 * 112.46156 * 7 6 4 33 33 H 1.09001 * 109.71998 * 352.08780 * 7 6 4 34 34 H 1.09006 * 109.49543 * 185.91935 * 8 7 6 35 35 H 1.09001 * 109.51351 * 65.85476 * 8 7 6 36 36 H 1.08996 * 113.79729 * 23.03552 * 11 10 9 37 37 H 1.08999 * 113.78807 * 154.50242 * 11 10 9 38 38 H 0.96994 * 120.00247 * 180.02562 * 16 15 13 39 39 H 1.08995 * 113.79389 * 270.02680 * 21 12 11 40 40 H 1.08993 * 113.79321 * 138.54997 * 21 12 11 41 41 H 1.08999 * 109.74559 * 11.95169 * 22 6 4 42 42 H 1.09005 * 109.74782 * 251.22710 * 22 6 4 43 43 H 1.09001 * 110.84502 * 337.31884 * 25 23 2 44 44 H 1.08990 * 110.85173 * 100.93514 * 25 23 2 45 45 H 1.08998 * 111.12140 * 276.20747 * 26 25 23 46 46 H 1.09000 * 111.15917 * 152.06895 * 26 25 23 47 47 H 1.08994 * 110.31237 * 204.64356 * 27 26 25 48 48 H 1.09008 * 110.39515 * 82.51235 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7106 -1.2303 5 8 2.4769 -1.8354 -1.1419 6 7 1.9876 -0.0958 -2.4289 7 6 2.5838 -0.7159 -3.6225 8 6 3.5292 0.2939 -4.2814 9 8 2.8215 1.5124 -4.5317 10 6 2.2956 2.1277 -3.3591 11 6 1.7426 3.5393 -3.5951 12 7 3.0979 4.0152 -3.2524 13 6 3.8198 5.1427 -3.5399 14 1 4.8069 5.2733 -3.1216 15 6 3.2827 6.1181 -4.3689 16 7 2.0255 6.0384 -4.7502 17 14 4.3443 7.5437 -4.9432 18 1 4.9178 7.2283 -6.2762 19 1 3.5144 8.7715 -5.0394 20 1 5.4446 7.7649 -3.9707 21 6 3.3630 2.7876 -2.4755 22 6 1.3405 1.2186 -2.5853 23 6 2.0399 -0.7211 1.2494 24 1 1.6881 -1.7528 1.2502 25 6 1.5383 0.0062 2.5154 26 6 2.7716 -0.0800 3.4554 27 6 3.9298 0.0219 2.4312 28 8 3.4718 -0.6960 1.2745 29 1 -0.3633 0.4517 -0.9230 30 1 -0.3634 -1.0252 0.0703 31 1 -0.3634 0.5735 0.8527 32 1 1.7960 -0.9906 -4.3239 33 1 3.1430 -1.6060 -3.3341 34 1 3.8971 -0.1131 -5.2233 35 1 4.3707 0.4919 -3.6174 36 1 1.4571 3.7326 -4.6291 37 1 0.9776 3.8374 -2.8781 38 1 1.6503 6.7196 -5.3297 39 1 3.0800 2.8620 -1.4255 40 1 4.3648 2.3834 -2.6200 41 1 1.1370 1.6479 -1.6043 42 1 0.4086 1.1067 -3.1396 43 1 1.2912 1.0445 2.2939 44 1 0.6835 -0.5132 2.9482 45 1 2.7970 -1.0331 3.9836 46 1 2.7917 0.7551 4.1556 47 1 4.8311 -0.4418 2.8320 48 1 4.1221 1.0645 2.1777 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053416096.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:44 Heat of formation + Delta-G solvation = -80.176080 kcal Electronic energy + Delta-G solvation = -29723.521568 eV Core-core repulsion = 25779.931711 eV Total energy + Delta-G solvation = -3943.589857 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.94552 -40.79353 -39.66819 -37.66232 -35.94260 -34.89596 -34.21071 -32.84893 -31.51655 -29.60351 -28.81462 -27.66648 -26.88462 -25.72975 -24.54657 -23.65402 -22.73103 -21.80382 -20.56130 -19.95890 -18.82368 -18.47462 -17.85249 -17.43933 -17.05679 -16.89572 -16.66316 -16.31689 -15.99081 -15.72174 -15.40078 -15.30287 -14.99085 -14.84916 -14.32391 -14.26340 -14.05679 -13.83438 -13.50343 -13.27852 -13.16419 -12.95556 -12.88007 -12.78261 -12.55255 -12.51549 -12.39535 -12.22972 -12.03046 -11.96158 -11.92617 -11.69275 -11.63153 -11.41037 -10.99791 -10.75246 -10.64009 -10.44830 -9.54396 -8.92708 -7.91675 -5.21922 1.45284 1.48161 1.55851 1.60388 1.86297 2.46561 2.67296 2.90559 3.27028 3.32142 3.38235 3.55486 3.63784 3.72662 3.77115 3.90572 3.99230 4.12148 4.13873 4.18588 4.26127 4.30789 4.41509 4.48698 4.53190 4.60668 4.61506 4.66657 4.74780 4.80770 4.82823 4.86888 4.88962 4.91541 4.94796 5.03133 5.06992 5.17353 5.24387 5.25454 5.32829 5.35730 5.49725 5.91790 6.16879 6.31833 6.35945 6.91848 7.12909 7.59817 8.53093 9.25960 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014725 B = 0.003754 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.089856 B = 7457.115944 C = 8351.470465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 H 0.100 0.900 4 C 0.526 3.474 5 O -0.572 6.572 6 N -0.614 5.614 7 C 0.083 3.917 8 C 0.047 3.953 9 O -0.366 6.366 10 C 0.073 3.927 11 C 0.180 3.820 12 N -0.632 5.632 13 C -0.237 4.237 14 H 0.077 0.923 15 C -0.058 4.058 16 N -0.947 5.947 17 Si 0.974 3.026 18 H -0.290 1.290 19 H -0.290 1.290 20 H -0.269 1.269 21 C 0.103 3.897 22 C 0.103 3.897 23 C 0.096 3.904 24 H 0.074 0.926 25 C -0.143 4.143 26 C -0.148 4.148 27 C 0.035 3.965 28 O -0.403 6.403 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.125 0.875 35 H 0.040 0.960 36 H 0.045 0.955 37 H 0.056 0.944 38 H 0.250 0.750 39 H 0.059 0.941 40 H 0.036 0.964 41 H 0.115 0.885 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.105 0.895 45 H 0.083 0.917 46 H 0.102 0.898 47 H 0.087 0.913 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.948 -14.047 14.258 20.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 H 0.118 0.882 4 C 0.316 3.684 5 O -0.451 6.451 6 N -0.347 5.347 7 C -0.039 4.039 8 C -0.030 4.030 9 O -0.285 6.285 10 C 0.032 3.968 11 C 0.054 3.946 12 N -0.358 5.358 13 C -0.366 4.366 14 H 0.095 0.905 15 C -0.251 4.251 16 N -0.596 5.596 17 Si 0.803 3.197 18 H -0.218 1.218 19 H -0.217 1.217 20 H -0.194 1.194 21 C -0.022 4.022 22 C -0.020 4.020 23 C 0.038 3.962 24 H 0.092 0.908 25 C -0.181 4.181 26 C -0.186 4.186 27 C -0.042 4.042 28 O -0.323 6.323 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.142 0.858 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.133 0.867 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.123 0.877 45 H 0.101 0.899 46 H 0.121 0.879 47 H 0.105 0.895 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.527 -14.360 13.837 20.449 hybrid contribution 0.815 0.995 -0.419 1.353 sum -3.712 -13.365 13.418 19.299 Atomic orbital electron populations 1.21842 0.89574 1.03767 1.04749 1.21838 0.99705 1.00707 0.92027 0.88194 1.20994 0.77091 0.85796 0.84545 1.90640 1.48030 1.20399 1.86066 1.48263 1.57393 1.20526 1.08554 1.22216 0.98016 0.96702 0.86991 1.23070 0.93557 0.84214 1.02174 1.87990 1.72483 1.38182 1.29801 1.23327 0.94307 0.92579 0.86629 1.22144 0.87849 0.85029 0.99548 1.46104 1.13536 1.17935 1.58240 1.19304 0.97786 0.95521 1.23942 0.90488 1.25517 0.97480 1.01370 1.00774 1.69967 1.13093 1.36742 1.39769 0.85130 0.77943 0.78449 0.78209 1.21758 1.21654 1.19416 1.23175 0.97555 0.86303 0.95169 1.22406 0.95640 0.81505 1.02485 1.22634 0.80705 0.99154 0.93662 0.90828 1.23232 0.99430 1.02233 0.93173 1.23254 0.93179 1.04228 0.97911 1.23597 0.98598 0.96518 0.85443 1.88543 1.21198 1.76084 1.46462 0.90999 0.91656 0.88392 0.89377 0.88673 0.85762 0.94122 0.93698 0.92668 0.94079 0.92348 0.94564 0.86664 0.88578 0.89070 0.87662 0.89865 0.87948 0.89503 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.55 71.98 0.62 -1.50 16 2 C -0.12 -2.62 1.51 -11.54 -0.02 -2.64 16 3 H 0.10 2.16 7.01 -2.39 -0.02 2.15 16 4 C 0.53 15.21 6.69 87.66 0.59 15.80 16 5 O -0.57 -20.48 15.23 3.89 0.06 -20.42 16 6 N -0.61 -17.08 3.03 -817.87 -2.48 -19.56 16 7 C 0.08 2.25 6.57 86.34 0.57 2.82 16 8 C 0.05 1.41 6.88 72.06 0.50 1.91 16 9 O -0.37 -14.28 10.52 -148.98 -1.57 -15.85 16 10 C 0.07 2.71 1.21 -10.49 -0.01 2.70 16 11 C 0.18 8.26 6.89 86.30 0.59 8.85 16 12 N -0.63 -32.56 3.70 -729.11 -2.70 -35.26 16 13 C -0.24 -13.54 10.69 84.03 0.90 -12.64 16 14 H 0.08 4.27 7.84 -2.91 -0.02 4.25 16 15 C -0.06 -3.30 5.50 84.86 0.47 -2.84 16 16 N -0.95 -56.57 11.47 21.65 0.25 -56.32 16 17 Si 0.97 46.04 29.56 68.60 2.03 48.07 16 18 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 19 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 21 C 0.10 4.24 8.08 86.31 0.70 4.93 16 22 C 0.10 2.78 4.58 86.18 0.39 3.18 16 23 C 0.10 2.08 2.60 31.06 0.08 2.16 16 24 H 0.07 1.75 7.92 -2.39 -0.02 1.73 16 25 C -0.14 -1.90 5.53 31.86 0.18 -1.73 16 26 C -0.15 -1.94 7.16 32.05 0.23 -1.71 16 27 C 0.03 0.68 7.78 72.65 0.56 1.24 16 28 O -0.40 -11.17 10.43 -142.09 -1.48 -12.65 16 29 H 0.07 1.06 6.38 -2.39 -0.02 1.04 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 0.97 7.19 -2.39 -0.02 0.96 16 32 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.09 2.63 7.11 -2.39 -0.02 2.61 16 34 H 0.12 3.10 8.14 -2.38 -0.02 3.08 16 35 H 0.04 1.32 7.19 -2.39 -0.02 1.30 16 36 H 0.04 2.39 7.25 -2.39 -0.02 2.37 16 37 H 0.06 2.38 8.09 -2.39 -0.02 2.36 16 38 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 39 H 0.06 2.16 7.94 -2.39 -0.02 2.14 16 40 H 0.04 1.54 7.27 -2.39 -0.02 1.52 16 41 H 0.12 2.65 4.91 -2.39 -0.01 2.64 16 42 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 43 H 0.09 1.06 7.56 -2.39 -0.02 1.04 16 44 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -76.33 370.72 1.40 -74.93 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.95 Total: 16.53 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 6.34 Total: 20.53 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -4.93 Total: -111.14 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -2.99 Total: -48.92 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -76.33 1.40 -74.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053416096.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.242 kcal (2) G-P(sol) polarization free energy of solvation -76.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds