Wall clock time and date at job start Tue Mar 31 2020 14:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.51941 * 2 1 4 4 C 1.53084 * 109.57608 * 239.83773 * 2 1 3 5 5 O 1.42903 * 109.41759 * 182.45756 * 4 2 1 6 6 C 1.42899 * 114.09783 * 61.15328 * 5 4 2 7 7 C 1.53086 * 109.41884 * 298.84899 * 6 5 4 8 8 C 1.53173 * 109.16516 * 57.60439 * 7 6 5 9 9 H 1.09003 * 109.61692 * 62.93028 * 8 7 6 10 10 C 1.50694 * 109.54735 * 183.15217 * 8 7 6 11 11 O 1.21282 * 119.99827 * 96.51355 * 10 8 7 12 12 N 1.34777 * 120.00594 * 276.51902 * 10 8 7 13 13 C 1.47114 * 121.05781 * 174.99877 * 12 10 8 14 14 C 1.53229 * 108.86011 * 127.68995 * 13 12 10 15 15 O 1.43439 * 109.16767 * 54.04980 * 14 13 12 16 16 C 1.42480 * 114.05098 * 300.12716 * 15 14 13 17 17 C 1.53438 * 113.81419 * 189.53864 * 16 15 14 18 18 N 1.47671 * 85.97940 * 91.23850 * 17 16 15 19 19 C 1.36941 * 134.46022 * 204.33179 * 18 17 16 20 20 H 1.08000 * 120.00308 * 179.97438 * 19 18 17 21 21 C 1.38816 * 119.99696 * 359.94726 * 19 18 17 22 22 N 1.31616 * 119.99988 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00109 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47298 * 89.99763 * 23 21 19 25 25 H 1.48492 * 109.47091 * 210.00308 * 23 21 19 26 26 H 1.48503 * 109.46801 * 330.00196 * 23 21 19 27 27 C 1.47673 * 91.08736 * 24.29298 * 18 17 16 28 28 C 1.47342 * 121.04835 * 354.97545 * 12 10 8 29 29 H 1.08998 * 109.47435 * 299.87847 * 1 2 3 30 30 H 1.08997 * 109.46801 * 59.88347 * 1 2 3 31 31 H 1.09009 * 109.46878 * 179.87336 * 1 2 3 32 32 H 1.09003 * 109.48323 * 302.43954 * 4 2 1 33 33 H 1.09003 * 109.48336 * 62.47395 * 4 2 1 34 34 H 1.09002 * 109.47629 * 58.83233 * 6 5 4 35 35 H 1.09003 * 109.48361 * 178.84921 * 6 5 4 36 36 H 1.09004 * 109.52227 * 297.70022 * 7 6 5 37 37 H 1.08999 * 109.52727 * 177.51204 * 7 6 5 38 38 H 1.08996 * 109.59799 * 247.53611 * 13 12 10 39 39 H 1.08996 * 109.59499 * 7.84302 * 13 12 10 40 40 H 1.08999 * 109.49369 * 174.15793 * 14 13 12 41 41 H 1.09002 * 109.48632 * 294.23137 * 14 13 12 42 42 H 1.09005 * 113.79448 * 205.50387 * 17 16 15 43 43 H 1.09003 * 113.79178 * 336.97259 * 17 16 15 44 44 H 0.97000 * 120.00053 * 180.02562 * 22 21 19 45 45 H 1.09001 * 113.79386 * 221.44657 * 27 18 17 46 46 H 1.09006 * 113.89748 * 89.98617 * 27 18 17 47 47 H 1.08997 * 109.74934 * 348.04922 * 28 12 10 48 48 H 1.09000 * 109.74942 * 108.72762 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0430 -0.7247 -1.2471 5 8 3.4708 -0.7729 -1.2150 6 6 4.0057 -1.4794 -0.0939 7 6 3.5716 -0.7850 1.1995 8 6 2.0419 -0.7245 1.2488 9 1 1.6363 -1.7359 1.2754 10 6 1.6064 0.0258 2.4810 11 8 1.3352 1.2057 2.4082 12 7 1.5184 -0.6141 3.6639 13 6 1.2019 0.1170 4.9006 14 6 0.0237 -0.5729 5.5962 15 8 0.3337 -1.9611 5.7818 16 6 0.5859 -2.6668 4.5701 17 6 0.6878 -4.1874 4.7485 18 7 -0.7633 -4.2122 4.4758 19 6 -1.7827 -5.0729 4.7845 20 1 -2.7892 -4.8572 4.4577 21 6 -1.5222 -6.2229 5.5170 22 7 -0.2956 -6.4857 5.9152 23 14 -2.9125 -7.3974 5.9376 24 1 -3.0462 -8.4119 4.8614 25 1 -2.6146 -8.0767 7.2240 26 1 -4.1822 -6.6372 6.0616 27 6 -0.6749 -2.9363 3.7376 28 6 1.7356 -2.0683 3.7592 29 1 -0.3634 0.5119 0.8910 30 1 -0.3633 0.5156 -0.8889 31 1 -0.3633 -1.0278 -0.0023 32 1 1.6454 -1.7395 -1.2672 33 1 1.7173 -0.1889 -2.1387 34 1 3.6339 -2.5040 -0.0989 35 1 5.0940 -1.4874 -0.1548 36 1 3.9771 0.2265 1.2237 37 1 3.9417 -1.3474 2.0568 38 1 2.0695 0.1121 5.5604 39 1 0.9324 1.1450 4.6587 40 1 -0.1531 -0.1033 6.5638 41 1 -0.8690 -0.4796 4.9777 42 1 1.2875 -4.6807 3.9835 43 1 0.9503 -4.4948 5.7608 44 1 -0.1135 -7.2895 6.4268 45 1 -1.4950 -2.2494 3.9467 46 1 -0.4808 -3.0554 2.6716 47 1 1.7484 -2.5050 2.7606 48 1 2.6831 -2.2671 4.2601 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053416287.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:54 Heat of formation + Delta-G solvation = -61.317973 kcal Electronic energy + Delta-G solvation = -29854.806130 eV Core-core repulsion = 25912.034022 eV Total energy + Delta-G solvation = -3942.772108 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.94487 -39.62639 -38.42110 -36.17685 -34.67365 -34.48061 -32.44370 -32.23016 -30.18442 -28.19678 -27.07278 -26.13912 -25.83082 -25.13126 -23.22340 -22.54270 -22.01442 -20.55666 -19.29212 -18.76346 -17.43772 -16.92163 -16.55891 -16.38622 -15.94397 -15.40378 -15.37269 -14.98567 -14.81695 -14.49621 -14.46010 -14.23077 -14.00056 -13.53997 -13.41658 -13.22713 -12.80145 -12.56425 -12.40267 -12.31472 -12.16907 -11.99081 -11.65313 -11.43147 -11.23825 -11.13585 -10.89535 -10.86782 -10.82125 -10.78692 -10.56125 -10.19640 -10.09525 -9.85431 -9.70612 -9.44892 -9.34325 -8.87671 -8.34715 -6.94488 -5.80715 -3.12860 2.57080 2.86829 3.37427 3.42508 3.44564 3.65756 4.00960 4.27585 4.39125 4.39875 4.50187 4.67726 4.82078 4.87784 4.98765 5.00652 5.09569 5.12884 5.17404 5.21765 5.28510 5.34388 5.41263 5.42082 5.44295 5.50818 5.54335 5.58822 5.65892 5.68357 5.81793 5.83236 5.89429 5.95487 6.10966 6.16284 6.20693 6.35278 6.40972 6.45637 6.85699 6.95926 7.11625 7.34991 7.45201 7.75636 7.93860 8.13007 8.99796 9.66420 10.51133 11.36714 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015600 B = 0.003704 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.469368 B = 7557.427106 C = 8272.361883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 H 0.090 0.910 4 C 0.065 3.935 5 O -0.383 6.383 6 C 0.063 3.937 7 C -0.144 4.144 8 C -0.108 4.108 9 H 0.097 0.903 10 C 0.527 3.473 11 O -0.544 6.544 12 N -0.609 5.609 13 C 0.078 3.922 14 C 0.046 3.954 15 O -0.336 6.336 16 C 0.053 3.947 17 C 0.182 3.818 18 N -0.600 5.600 19 C -0.223 4.223 20 H 0.080 0.920 21 C -0.004 4.004 22 N -0.921 5.921 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.289 1.289 26 H -0.281 1.281 27 C 0.101 3.899 28 C 0.090 3.910 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.053 0.947 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.255 0.745 45 H 0.045 0.955 46 H 0.037 0.963 47 H 0.094 0.906 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.125 12.177 -9.655 17.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.126 4.126 3 H 0.108 0.892 4 C -0.011 4.011 5 O -0.301 6.301 6 C -0.014 4.014 7 C -0.182 4.182 8 C -0.129 4.129 9 H 0.115 0.885 10 C 0.316 3.684 11 O -0.422 6.422 12 N -0.343 5.343 13 C -0.045 4.045 14 C -0.032 4.032 15 O -0.253 6.253 16 C 0.011 3.989 17 C 0.056 3.944 18 N -0.326 5.326 19 C -0.350 4.350 20 H 0.097 0.903 21 C -0.201 4.201 22 N -0.567 5.567 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.215 1.215 26 H -0.206 1.206 27 C -0.025 4.025 28 C -0.034 4.034 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.112 0.888 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.939 12.506 -9.484 17.589 hybrid contribution -0.962 -0.784 0.310 1.279 sum 6.977 11.722 -9.174 16.439 Atomic orbital electron populations 1.21797 0.93964 1.02085 1.02829 1.21615 0.96827 1.01015 0.93160 0.89183 1.22703 0.80797 0.99869 0.97767 1.87930 1.20451 1.76416 1.45308 1.22580 0.99304 0.94690 0.84841 1.22144 0.93404 1.03095 0.99555 1.21491 0.97295 1.00839 0.93321 0.88499 1.20440 0.76649 0.87314 0.84000 1.90653 1.50071 1.16155 1.85304 1.48232 1.69790 1.08910 1.07346 1.22262 0.99087 0.97530 0.85579 1.22945 0.95887 0.83299 1.01047 1.88102 1.89731 1.19613 1.27899 1.23752 0.93456 0.95621 0.86073 1.22218 0.86135 0.84379 1.01686 1.45710 1.03852 1.22486 1.60536 1.18965 0.87341 0.99919 1.28763 0.90261 1.24751 0.96721 0.98139 1.00501 1.69784 1.18007 1.27192 1.41767 0.86114 0.81090 0.80898 0.77621 1.21602 1.21547 1.20629 1.23033 0.95261 0.89724 0.94522 1.22521 0.99901 0.78945 1.02023 0.91552 0.92237 0.92542 0.92825 0.88541 0.92629 0.88427 0.90365 0.90095 0.90815 0.88511 0.88025 0.92832 0.93914 0.89586 0.93543 0.93685 0.94567 0.88803 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.96 37.16 0.33 -1.28 16 2 C -0.11 -1.16 2.06 -90.48 -0.19 -1.34 16 3 H 0.09 1.11 7.78 -51.93 -0.40 0.71 16 4 C 0.07 0.62 6.13 37.20 0.23 0.85 16 5 O -0.38 -4.12 10.77 -35.23 -0.38 -4.50 16 6 C 0.06 0.55 6.84 37.20 0.25 0.81 16 7 C -0.14 -1.38 5.40 -26.60 -0.14 -1.52 16 8 C -0.11 -1.21 1.39 -91.59 -0.13 -1.33 16 9 H 0.10 1.05 6.11 -51.93 -0.32 0.73 16 10 C 0.53 7.23 6.11 -10.99 -0.07 7.16 16 11 O -0.54 -8.89 14.54 5.56 0.08 -8.81 16 12 N -0.61 -8.27 3.03 -172.44 -0.52 -8.79 16 13 C 0.08 1.02 6.59 -3.59 -0.02 1.00 16 14 C 0.05 0.67 6.91 37.28 0.26 0.93 16 15 O -0.34 -6.37 10.52 -35.23 -0.37 -6.75 16 16 C 0.05 0.96 1.21 -90.30 -0.11 0.85 16 17 C 0.18 4.06 6.90 -3.18 -0.02 4.03 16 18 N -0.60 -15.05 3.70 -180.31 -0.67 -15.72 16 19 C -0.22 -6.19 10.70 -15.06 -0.16 -6.35 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 22 N -0.92 -26.72 11.39 55.49 0.63 -26.09 16 23 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 27 C 0.10 2.02 8.08 -3.17 -0.03 2.00 16 28 C 0.09 1.23 5.55 -3.63 -0.02 1.21 16 29 H 0.07 0.86 6.66 -51.93 -0.35 0.52 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.70 8.05 -51.93 -0.42 0.28 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.10 1.26 7.05 -51.93 -0.37 0.89 16 40 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.05 0.82 7.20 -51.93 -0.37 0.45 16 42 H 0.04 0.91 8.09 -51.93 -0.42 0.49 16 43 H 0.09 2.20 7.17 -51.93 -0.37 1.82 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.04 0.92 7.28 -51.93 -0.38 0.54 16 46 H 0.04 0.67 7.94 -51.93 -0.41 0.26 16 47 H 0.09 1.15 5.34 -51.93 -0.28 0.88 16 48 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -32.83 369.42 -8.45 -41.28 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.86 Total: 0.10 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 0.09 Total: 6.80 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.56 Total: -50.60 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.67 Total: -20.06 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.83 -8.45 -41.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053416287.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.034 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds