Wall clock time and date at job start Tue Mar 31 2020 14:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.51941 * 2 1 4 4 C 1.53084 * 109.57608 * 239.83773 * 2 1 3 5 5 O 1.42903 * 109.41759 * 182.45756 * 4 2 1 6 6 C 1.42899 * 114.09783 * 61.15328 * 5 4 2 7 7 C 1.53086 * 109.41884 * 298.84899 * 6 5 4 8 8 C 1.53173 * 109.16516 * 57.60439 * 7 6 5 9 9 H 1.09003 * 109.61692 * 62.93028 * 8 7 6 10 10 C 1.50694 * 109.54735 * 183.15217 * 8 7 6 11 11 O 1.21282 * 119.99827 * 96.51355 * 10 8 7 12 12 N 1.34777 * 120.00594 * 276.51902 * 10 8 7 13 13 C 1.47114 * 121.05781 * 174.99877 * 12 10 8 14 14 C 1.53229 * 108.86011 * 127.68995 * 13 12 10 15 15 O 1.43439 * 109.16767 * 54.04980 * 14 13 12 16 16 C 1.42480 * 114.05098 * 300.12716 * 15 14 13 17 17 C 1.53438 * 113.81419 * 189.53864 * 16 15 14 18 18 N 1.47671 * 85.97940 * 91.23850 * 17 16 15 19 19 C 1.36941 * 134.46022 * 204.33179 * 18 17 16 20 20 H 1.08000 * 120.00308 * 179.97438 * 19 18 17 21 21 C 1.38816 * 119.99696 * 359.94726 * 19 18 17 22 22 N 1.31616 * 119.99988 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00109 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47298 * 89.99763 * 23 21 19 25 25 H 1.48492 * 109.47091 * 210.00308 * 23 21 19 26 26 H 1.48503 * 109.46801 * 330.00196 * 23 21 19 27 27 C 1.47673 * 91.08736 * 24.29298 * 18 17 16 28 28 C 1.47342 * 121.04835 * 354.97545 * 12 10 8 29 29 H 1.08998 * 109.47435 * 299.87847 * 1 2 3 30 30 H 1.08997 * 109.46801 * 59.88347 * 1 2 3 31 31 H 1.09009 * 109.46878 * 179.87336 * 1 2 3 32 32 H 1.09003 * 109.48323 * 302.43954 * 4 2 1 33 33 H 1.09003 * 109.48336 * 62.47395 * 4 2 1 34 34 H 1.09002 * 109.47629 * 58.83233 * 6 5 4 35 35 H 1.09003 * 109.48361 * 178.84921 * 6 5 4 36 36 H 1.09004 * 109.52227 * 297.70022 * 7 6 5 37 37 H 1.08999 * 109.52727 * 177.51204 * 7 6 5 38 38 H 1.08996 * 109.59799 * 247.53611 * 13 12 10 39 39 H 1.08996 * 109.59499 * 7.84302 * 13 12 10 40 40 H 1.08999 * 109.49369 * 174.15793 * 14 13 12 41 41 H 1.09002 * 109.48632 * 294.23137 * 14 13 12 42 42 H 1.09005 * 113.79448 * 205.50387 * 17 16 15 43 43 H 1.09003 * 113.79178 * 336.97259 * 17 16 15 44 44 H 0.97000 * 120.00053 * 180.02562 * 22 21 19 45 45 H 1.09001 * 113.79386 * 221.44657 * 27 18 17 46 46 H 1.09006 * 113.89748 * 89.98617 * 27 18 17 47 47 H 1.08997 * 109.74934 * 348.04922 * 28 12 10 48 48 H 1.09000 * 109.74942 * 108.72762 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0430 -0.7247 -1.2471 5 8 3.4708 -0.7729 -1.2150 6 6 4.0057 -1.4794 -0.0939 7 6 3.5716 -0.7850 1.1995 8 6 2.0419 -0.7245 1.2488 9 1 1.6363 -1.7359 1.2754 10 6 1.6064 0.0258 2.4810 11 8 1.3352 1.2057 2.4082 12 7 1.5184 -0.6141 3.6639 13 6 1.2019 0.1170 4.9006 14 6 0.0237 -0.5729 5.5962 15 8 0.3337 -1.9611 5.7818 16 6 0.5859 -2.6668 4.5701 17 6 0.6878 -4.1874 4.7485 18 7 -0.7633 -4.2122 4.4758 19 6 -1.7827 -5.0729 4.7845 20 1 -2.7892 -4.8572 4.4577 21 6 -1.5222 -6.2229 5.5170 22 7 -0.2956 -6.4857 5.9152 23 14 -2.9125 -7.3974 5.9376 24 1 -3.0462 -8.4119 4.8614 25 1 -2.6146 -8.0767 7.2240 26 1 -4.1822 -6.6372 6.0616 27 6 -0.6749 -2.9363 3.7376 28 6 1.7356 -2.0683 3.7592 29 1 -0.3634 0.5119 0.8910 30 1 -0.3633 0.5156 -0.8889 31 1 -0.3633 -1.0278 -0.0023 32 1 1.6454 -1.7395 -1.2672 33 1 1.7173 -0.1889 -2.1387 34 1 3.6339 -2.5040 -0.0989 35 1 5.0940 -1.4874 -0.1548 36 1 3.9771 0.2265 1.2237 37 1 3.9417 -1.3474 2.0568 38 1 2.0695 0.1121 5.5604 39 1 0.9324 1.1450 4.6587 40 1 -0.1531 -0.1033 6.5638 41 1 -0.8690 -0.4796 4.9777 42 1 1.2875 -4.6807 3.9835 43 1 0.9503 -4.4948 5.7608 44 1 -0.1135 -7.2895 6.4268 45 1 -1.4950 -2.2494 3.9467 46 1 -0.4808 -3.0554 2.6716 47 1 1.7484 -2.5050 2.7606 48 1 2.6831 -2.2671 4.2601 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053416287.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:53 Heat of formation + Delta-G solvation = -83.725525 kcal Electronic energy + Delta-G solvation = -29855.777794 eV Core-core repulsion = 25912.034022 eV Total energy + Delta-G solvation = -3943.743772 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.05252 -40.82359 -39.47520 -37.66699 -35.89011 -35.37439 -34.23039 -33.19694 -31.55949 -29.62439 -28.03355 -27.58629 -26.95943 -26.59708 -24.52133 -23.59626 -23.29141 -21.52751 -20.62983 -19.93100 -18.82242 -18.43802 -17.80790 -17.17762 -17.05090 -16.95272 -16.42518 -16.35509 -15.91290 -15.70369 -15.61503 -15.37584 -15.17662 -14.92859 -14.81415 -14.31850 -14.05859 -14.01492 -13.52672 -13.32788 -13.18107 -13.02921 -12.90509 -12.87490 -12.75498 -12.54550 -12.38538 -12.17364 -11.96006 -11.92351 -11.70325 -11.63418 -11.44936 -11.27370 -10.99328 -10.88539 -10.78946 -10.35478 -9.57512 -8.91494 -7.90321 -5.22716 1.45954 1.47506 1.51118 1.55916 1.80114 2.46637 2.66180 2.97015 3.25891 3.29238 3.34646 3.54626 3.62318 3.71167 3.76354 3.84708 3.91691 4.08480 4.13419 4.22796 4.27867 4.44089 4.46150 4.48779 4.51426 4.60612 4.63763 4.65255 4.66109 4.73419 4.76288 4.81888 4.84397 4.89808 4.92035 5.07634 5.09124 5.18296 5.24072 5.24698 5.27967 5.37388 5.50461 5.92736 6.25786 6.27310 6.35798 6.92094 7.05761 7.60059 8.52708 9.26416 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015600 B = 0.003704 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.469368 B = 7557.427106 C = 8272.361883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 H 0.070 0.930 4 C 0.067 3.933 5 O -0.399 6.399 6 C 0.060 3.940 7 C -0.139 4.139 8 C -0.107 4.107 9 H 0.106 0.894 10 C 0.527 3.473 11 O -0.573 6.573 12 N -0.610 5.610 13 C 0.082 3.918 14 C 0.046 3.954 15 O -0.368 6.368 16 C 0.075 3.925 17 C 0.179 3.821 18 N -0.632 5.632 19 C -0.236 4.236 20 H 0.078 0.922 21 C -0.059 4.059 22 N -0.949 5.949 23 Si 0.975 3.025 24 H -0.283 1.283 25 H -0.293 1.293 26 H -0.273 1.273 27 C 0.102 3.898 28 C 0.101 3.899 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.042 0.958 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.250 0.750 45 H 0.037 0.963 46 H 0.061 0.939 47 H 0.115 0.885 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.749 12.399 -10.859 18.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 H 0.089 0.911 4 C -0.009 4.009 5 O -0.318 6.318 6 C -0.016 4.016 7 C -0.177 4.177 8 C -0.128 4.128 9 H 0.124 0.876 10 C 0.317 3.683 11 O -0.452 6.452 12 N -0.343 5.343 13 C -0.041 4.041 14 C -0.031 4.031 15 O -0.286 6.286 16 C 0.033 3.967 17 C 0.053 3.947 18 N -0.359 5.359 19 C -0.364 4.364 20 H 0.095 0.905 21 C -0.253 4.253 22 N -0.597 5.597 23 Si 0.804 3.196 24 H -0.210 1.210 25 H -0.220 1.220 26 H -0.198 1.198 27 C -0.023 4.023 28 C -0.022 4.022 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.126 0.874 34 H 0.085 0.915 35 H 0.132 0.868 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.142 0.858 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.079 0.921 47 H 0.133 0.867 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.566 12.760 -10.709 18.731 hybrid contribution -1.190 -0.759 0.699 1.575 sum 7.376 12.001 -10.010 17.281 Atomic orbital electron populations 1.21756 0.94086 1.02239 1.02249 1.21565 0.96654 1.00144 0.93889 0.91127 1.22747 0.80413 1.00402 0.97354 1.87916 1.20973 1.76846 1.46096 1.22738 1.00314 0.94851 0.83712 1.22138 0.91970 1.02844 1.00745 1.21559 0.98536 1.00716 0.92029 0.87573 1.20884 0.75828 0.87070 0.84472 1.90645 1.51332 1.17593 1.85677 1.48273 1.69669 1.08739 1.07598 1.22248 0.98979 0.97230 0.85594 1.23126 0.96107 0.81404 1.02426 1.88048 1.90063 1.21845 1.28663 1.23320 0.93983 0.93557 0.85859 1.22150 0.85048 0.87734 0.99762 1.46050 1.04524 1.23587 1.61733 1.19297 0.88308 1.00458 1.28348 0.90468 1.25522 0.98951 0.99831 1.00977 1.69958 1.19663 1.27422 1.42688 0.85134 0.78671 0.78835 0.77008 1.21010 1.21975 1.19830 1.23200 0.96126 0.87366 0.95602 1.22408 0.98505 0.78833 1.02453 0.94083 0.90882 0.91938 0.91728 0.87421 0.91453 0.86828 0.91544 0.88725 0.89237 0.88331 0.85826 0.93935 0.92751 0.93528 0.94122 0.94460 0.92133 0.86743 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.96 71.98 0.65 -2.31 16 2 C -0.10 -2.07 2.06 -10.70 -0.02 -2.09 16 3 H 0.07 1.70 7.78 -2.39 -0.02 1.68 16 4 C 0.07 1.12 6.13 72.01 0.44 1.56 16 5 O -0.40 -7.66 10.77 -148.98 -1.60 -9.26 16 6 C 0.06 0.88 6.84 72.01 0.49 1.38 16 7 C -0.14 -2.30 5.40 30.68 0.17 -2.13 16 8 C -0.11 -2.15 1.39 -11.42 -0.02 -2.17 16 9 H 0.11 1.94 6.11 -2.39 -0.01 1.92 16 10 C 0.53 13.56 6.11 87.66 0.54 14.10 16 11 O -0.57 -18.25 14.54 -3.04 -0.04 -18.29 16 12 N -0.61 -15.25 3.03 -817.87 -2.48 -17.73 16 13 C 0.08 2.00 6.59 86.34 0.57 2.57 16 14 C 0.05 1.30 6.91 72.06 0.50 1.80 16 15 O -0.37 -13.75 10.52 -148.98 -1.57 -15.32 16 16 C 0.07 2.63 1.21 -10.49 -0.01 2.62 16 17 C 0.18 7.99 6.90 86.30 0.60 8.59 16 18 N -0.63 -31.86 3.70 -729.25 -2.70 -34.56 16 19 C -0.24 -13.24 10.70 84.03 0.90 -12.34 16 20 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 21 C -0.06 -3.35 5.50 84.86 0.47 -2.89 16 22 N -0.95 -56.13 11.39 21.65 0.25 -55.88 16 23 Si 0.98 45.48 29.55 68.60 2.03 47.51 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 26 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 27 C 0.10 4.01 8.08 86.31 0.70 4.71 16 28 C 0.10 2.53 5.55 86.18 0.48 3.00 16 29 H 0.04 1.04 6.66 -2.39 -0.02 1.02 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.09 1.31 8.05 -2.39 -0.02 1.29 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.10 2.41 7.05 -2.39 -0.02 2.40 16 40 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.04 1.28 7.20 -2.39 -0.02 1.26 16 42 H 0.05 2.28 8.09 -2.38 -0.02 2.26 16 43 H 0.05 2.44 7.17 -2.39 -0.02 2.43 16 44 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 45 H 0.04 1.51 7.28 -2.39 -0.02 1.49 16 46 H 0.06 2.10 7.94 -2.38 -0.02 2.08 16 47 H 0.11 2.40 5.34 -2.39 -0.01 2.39 16 48 H 0.10 2.13 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -72.10 369.42 1.26 -70.84 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.95 Total: 16.31 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 6.44 Total: 16.39 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -4.93 Total: -108.17 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -3.22 Total: -42.87 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -72.10 1.26 -70.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053416287.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.889 kcal (2) G-P(sol) polarization free energy of solvation -72.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds