Wall clock time and date at job start Tue Mar 31 2020 13:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.57734 * 2 1 4 4 O 1.43072 * 109.52627 * 239.83265 * 2 1 3 5 5 C 1.43073 * 113.58683 * 182.14693 * 4 2 1 6 6 C 1.53146 * 109.15165 * 57.95677 * 5 4 2 7 7 O 1.43072 * 109.15038 * 304.68041 * 6 5 4 8 8 C 1.43082 * 113.59055 * 57.95424 * 7 6 5 9 9 H 1.09003 * 109.52426 * 182.07831 * 8 7 6 10 10 C 1.50700 * 109.52270 * 61.94803 * 8 7 6 11 11 O 1.21280 * 120.00291 * 323.53669 * 10 8 7 12 12 N 1.34770 * 119.99836 * 143.53263 * 10 8 7 13 13 C 1.47218 * 126.70329 * 354.96909 * 12 10 8 14 14 C 1.53781 * 106.37520 * 148.72160 * 13 12 10 15 15 H 1.09000 * 111.85761 * 140.61124 * 14 13 12 16 16 C 1.53781 * 110.15882 * 265.68376 * 14 13 12 17 17 N 1.47215 * 106.37580 * 131.85492 * 16 14 13 18 18 C 1.36936 * 126.70435 * 148.72677 * 17 16 14 19 19 H 1.07995 * 120.00094 * 180.02562 * 18 17 16 20 20 C 1.38810 * 119.99869 * 0.02562 * 18 17 16 21 21 N 1.31620 * 119.99993 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00112 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47029 * 90.00118 * 22 20 18 24 24 H 1.48498 * 109.47158 * 210.00164 * 22 20 18 25 25 H 1.48503 * 109.47062 * 329.99948 * 22 20 18 26 26 C 1.46516 * 106.96975 * 329.55212 * 17 16 14 27 27 C 1.53781 * 106.72815 * 29.90686 * 26 17 16 28 28 C 1.53001 * 111.85867 * 104.48248 * 27 26 17 29 29 C 1.46514 * 126.32345 * 173.98363 * 12 10 8 30 30 H 1.08997 * 109.47232 * 304.00399 * 1 2 3 31 31 H 1.09009 * 109.46439 * 64.00406 * 1 2 3 32 32 H 1.09000 * 109.47160 * 183.99739 * 1 2 3 33 33 H 1.08998 * 109.52990 * 298.04605 * 5 4 2 34 34 H 1.09004 * 109.57374 * 177.88351 * 5 4 2 35 35 H 1.09006 * 109.52230 * 184.78268 * 6 5 4 36 36 H 1.08997 * 109.58097 * 64.61946 * 6 5 4 37 37 H 1.09005 * 110.07241 * 29.49788 * 13 12 10 38 38 H 1.08988 * 110.07761 * 267.95232 * 13 12 10 39 39 H 1.09001 * 110.07412 * 251.08215 * 16 14 13 40 40 H 1.08999 * 110.07427 * 12.62519 * 16 14 13 41 41 H 0.97001 * 120.00179 * 180.02562 * 21 20 18 42 42 H 1.08999 * 108.72973 * 271.19092 * 26 17 16 43 43 H 1.08999 * 111.06576 * 149.89636 * 26 17 16 44 44 H 1.08997 * 109.47159 * 302.06006 * 28 27 26 45 45 H 1.08998 * 109.46904 * 62.06295 * 28 27 26 46 46 H 1.09006 * 109.47144 * 182.05671 * 28 27 26 47 47 H 1.08999 * 108.72987 * 92.01736 * 29 12 10 48 48 H 1.09003 * 111.06488 * 330.71864 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 8 2.0083 -0.6776 -1.1658 5 6 3.4345 -0.7712 -1.2290 6 6 3.9463 -1.4964 0.0190 7 8 3.4680 -0.8188 1.1848 8 6 2.0417 -0.7252 1.2481 9 1 1.7523 -0.1676 2.1389 10 6 1.4482 -2.1092 1.3052 11 8 1.9563 -3.0134 0.6765 12 7 0.3528 -2.3422 2.0550 13 6 -0.3191 -1.3874 2.9517 14 6 -1.8116 -1.7574 2.9391 15 1 -2.2599 -1.6693 3.9288 16 6 -2.5586 -0.9111 1.8948 17 7 -3.3784 -1.8489 1.1101 18 6 -4.5870 -1.5855 0.5225 19 1 -5.0980 -2.3590 -0.0315 20 6 -5.1551 -0.3244 0.6389 21 7 -4.5320 0.6184 1.3136 22 14 -6.8034 0.0351 -0.1633 23 1 -7.8970 -0.2734 0.7928 24 1 -6.8671 1.4695 -0.5422 25 1 -6.9564 -0.8051 -1.3782 26 6 -2.6653 -3.1287 1.0922 27 6 -1.8684 -3.2097 2.4050 28 6 -2.5194 -4.1636 3.4086 29 6 -0.4076 -3.5931 2.1152 30 1 -0.3633 0.5747 0.8519 31 1 -0.3632 0.4505 -0.9238 32 1 -0.3633 -1.0252 0.0716 33 1 3.8639 0.2299 -1.2704 34 1 3.7248 -1.3292 -2.1192 35 1 5.0363 -1.4964 0.0191 36 1 3.5820 -2.5237 0.0196 37 1 -0.1827 -0.3700 2.5848 38 1 0.0804 -1.4780 3.9617 39 1 -3.1976 -0.1814 2.3922 40 1 -1.8456 -0.4035 1.2452 41 1 -4.9292 1.4996 1.3952 42 1 -1.9853 -3.1385 0.2404 43 1 -3.3618 -3.9644 1.0252 44 1 -3.5387 -3.8357 3.6129 45 1 -2.5382 -5.1709 2.9928 46 1 -1.9451 -4.1636 4.3351 47 1 -0.0130 -4.2038 2.9272 48 1 -0.3434 -4.1364 1.1725 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091751394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:24 Heat of formation + Delta-G solvation = -75.465345 kcal Electronic energy + Delta-G solvation = -30793.611032 eV Core-core repulsion = 26850.225448 eV Total energy + Delta-G solvation = -3943.385584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.10873 -39.68176 -37.76212 -36.03301 -35.06271 -33.53686 -32.43555 -30.86925 -30.12452 -28.91180 -27.67343 -26.17070 -25.52869 -25.14067 -23.24378 -22.71860 -21.64672 -20.25059 -19.21283 -18.48351 -17.41060 -17.06192 -16.80897 -16.25093 -16.11356 -15.52535 -15.18573 -15.06926 -14.74274 -14.13699 -13.77288 -13.62027 -13.51433 -13.28653 -13.24095 -12.71441 -12.56325 -12.32369 -12.16608 -11.92353 -11.84863 -11.79349 -11.65558 -11.57562 -11.35522 -11.05287 -11.00191 -10.94292 -10.78668 -10.43644 -10.18157 -10.11775 -9.88363 -9.79270 -9.60921 -9.52068 -8.73695 -8.69508 -8.42394 -6.88978 -5.68692 -3.12447 2.60579 3.06523 3.36903 3.43024 3.44156 3.69099 3.72106 4.41440 4.46060 4.49746 4.85131 4.85323 4.97361 5.00176 5.10674 5.20792 5.26661 5.34304 5.35914 5.43275 5.48124 5.57808 5.61244 5.65867 5.71894 5.86992 5.95507 5.97109 6.01579 6.03315 6.10721 6.16004 6.25085 6.35255 6.40472 6.51518 6.55278 6.63358 6.78611 6.83414 6.90887 7.10909 7.41815 7.58072 7.69636 7.78193 8.25458 8.35422 9.17637 9.78662 10.45109 11.32416 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015511 B = 0.004610 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.782993 B = 6072.079141 C = 7119.833898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.069 3.931 3 H 0.077 0.923 4 O -0.365 6.365 5 C 0.030 3.970 6 C -0.006 4.006 7 O -0.360 6.360 8 C 0.045 3.955 9 H 0.128 0.872 10 C 0.523 3.477 11 O -0.533 6.533 12 N -0.604 5.604 13 C 0.103 3.897 14 C -0.117 4.117 15 H 0.086 0.914 16 C 0.131 3.869 17 N -0.592 5.592 18 C -0.217 4.217 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.922 5.922 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.146 3.854 27 C -0.087 4.087 28 C -0.122 4.122 29 C 0.121 3.879 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.122 0.878 40 H 0.026 0.974 41 H 0.252 0.748 42 H 0.016 0.984 43 H 0.042 0.958 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.049 0.951 47 H 0.059 0.941 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.139 -2.321 3.285 13.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.010 3.990 3 H 0.095 0.905 4 O -0.284 6.284 5 C -0.047 4.047 6 C -0.082 4.082 7 O -0.278 6.278 8 C -0.017 4.017 9 H 0.145 0.855 10 C 0.312 3.688 11 O -0.411 6.411 12 N -0.338 5.338 13 C -0.020 4.020 14 C -0.138 4.138 15 H 0.105 0.895 16 C 0.006 3.994 17 N -0.315 5.315 18 C -0.345 4.345 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.571 5.571 22 Si 0.744 3.256 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.019 3.981 27 C -0.089 4.089 28 C -0.180 4.180 29 C -0.002 4.002 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.139 0.861 40 H 0.044 0.956 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.339 -2.591 2.826 13.879 hybrid contribution -0.737 0.242 -0.338 0.846 sum 12.601 -2.349 2.488 13.058 Atomic orbital electron populations 1.22110 0.90054 1.04678 1.03957 1.22702 0.97206 0.94957 0.84103 0.90516 1.88191 1.20395 1.78348 1.41460 1.23147 0.82102 1.00166 0.99246 1.23855 0.99542 1.00123 0.84673 1.88134 1.17837 1.78022 1.43762 1.22890 0.83106 0.93988 1.01686 0.85470 1.20719 0.79652 0.90528 0.77941 1.90506 1.59791 1.46380 1.44440 1.48410 1.26810 1.15024 1.43507 1.22313 0.93348 0.93435 0.92936 1.23131 0.93206 0.95534 1.01897 0.89542 1.22240 0.93537 0.92786 0.90830 1.44302 1.20298 1.06187 1.60760 1.19093 0.93837 0.96311 1.25261 0.90480 1.24721 0.99000 0.95902 1.00873 1.69575 1.38261 1.03365 1.45894 0.86085 0.83445 0.77285 0.78787 1.21658 1.21661 1.20788 1.21287 0.93748 0.90471 0.92555 1.22182 0.93391 0.95537 0.97822 1.21635 1.00992 0.98044 0.97301 1.21918 0.90313 0.86235 1.01767 0.89679 0.90851 0.90469 0.92871 0.88052 0.88518 0.87227 0.90301 0.91766 0.86097 0.95612 0.93704 0.96650 0.93937 0.91651 0.92923 0.93149 0.92291 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 6.96 37.16 0.26 -2.19 16 2 C 0.07 1.01 3.15 -26.65 -0.08 0.92 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 O -0.37 -5.89 10.11 -49.62 -0.50 -6.40 16 5 C 0.03 0.38 7.05 37.23 0.26 0.65 16 6 C -0.01 -0.08 6.58 37.23 0.24 0.17 16 7 O -0.36 -5.26 10.65 -60.93 -0.65 -5.91 16 8 C 0.04 0.64 2.95 -27.81 -0.08 0.56 16 9 H 0.13 1.55 6.59 -51.93 -0.34 1.20 16 10 C 0.52 8.71 5.52 -10.99 -0.06 8.65 16 11 O -0.53 -10.19 13.67 -11.64 -0.16 -10.35 16 12 N -0.60 -9.42 2.66 -172.14 -0.46 -9.88 16 13 C 0.10 1.45 5.64 -3.24 -0.02 1.43 16 14 C -0.12 -1.96 3.63 -88.83 -0.32 -2.28 16 15 H 0.09 1.39 7.88 -51.93 -0.41 0.98 16 16 C 0.13 2.82 5.74 -3.25 -0.02 2.80 16 17 N -0.59 -14.16 3.37 -171.69 -0.58 -14.74 16 18 C -0.22 -5.75 10.31 -15.06 -0.16 -5.91 16 19 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 20 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 21 N -0.92 -25.11 10.08 55.49 0.56 -24.55 16 22 Si 0.91 21.39 29.55 -169.99 -5.02 16.37 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.15 2.96 6.34 -3.63 -0.02 2.93 16 27 C -0.09 -1.42 1.10 -152.72 -0.17 -1.59 16 28 C -0.12 -1.72 8.43 37.16 0.31 -1.40 16 29 C 0.12 1.88 5.90 -3.63 -0.02 1.86 16 30 H 0.08 1.30 5.75 -51.93 -0.30 1.00 16 31 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 32 H 0.08 1.46 5.90 -51.93 -0.31 1.15 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.11 1.72 5.05 -51.93 -0.26 1.46 16 37 H 0.08 1.06 4.52 -51.93 -0.23 0.82 16 38 H 0.06 0.77 8.14 -51.94 -0.42 0.34 16 39 H 0.12 3.00 5.45 -51.93 -0.28 2.72 16 40 H 0.03 0.56 3.62 -51.93 -0.19 0.37 16 41 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 42 H 0.02 0.34 7.46 -51.93 -0.39 -0.05 16 43 H 0.04 0.84 7.82 -51.93 -0.41 0.44 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.83 7.87 -51.93 -0.41 0.42 16 48 H 0.08 1.32 7.41 -51.93 -0.38 0.94 16 LS Contribution 350.97 15.07 5.29 5.29 Total: -1.00 -30.58 350.97 -8.76 -39.34 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.26 Total: 4.60 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 0.03 Total: 6.24 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.48 Total: -49.17 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -1.31 Total: -22.66 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.58 -8.76 -39.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091751394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.127 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds