Wall clock time and date at job start Tue Mar 31 2020 13:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.57734 * 2 1 4 4 O 1.43072 * 109.52627 * 239.83265 * 2 1 3 5 5 C 1.43073 * 113.58683 * 182.14693 * 4 2 1 6 6 C 1.53146 * 109.15165 * 57.95677 * 5 4 2 7 7 O 1.43072 * 109.15038 * 304.68041 * 6 5 4 8 8 C 1.43082 * 113.59055 * 57.95424 * 7 6 5 9 9 H 1.09003 * 109.52426 * 182.07831 * 8 7 6 10 10 C 1.50700 * 109.52270 * 61.94803 * 8 7 6 11 11 O 1.21280 * 120.00291 * 323.53669 * 10 8 7 12 12 N 1.34770 * 119.99836 * 143.53263 * 10 8 7 13 13 C 1.47218 * 126.70329 * 354.96909 * 12 10 8 14 14 C 1.53781 * 106.37520 * 148.72160 * 13 12 10 15 15 H 1.09000 * 111.85761 * 140.61124 * 14 13 12 16 16 C 1.53781 * 110.15882 * 265.68376 * 14 13 12 17 17 N 1.47215 * 106.37580 * 131.85492 * 16 14 13 18 18 C 1.36936 * 126.70435 * 148.72677 * 17 16 14 19 19 H 1.07995 * 120.00094 * 180.02562 * 18 17 16 20 20 C 1.38810 * 119.99869 * 0.02562 * 18 17 16 21 21 N 1.31620 * 119.99993 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00112 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47029 * 90.00118 * 22 20 18 24 24 H 1.48498 * 109.47158 * 210.00164 * 22 20 18 25 25 H 1.48503 * 109.47062 * 329.99948 * 22 20 18 26 26 C 1.46516 * 106.96975 * 329.55212 * 17 16 14 27 27 C 1.53781 * 106.72815 * 29.90686 * 26 17 16 28 28 C 1.53001 * 111.85867 * 104.48248 * 27 26 17 29 29 C 1.46514 * 126.32345 * 173.98363 * 12 10 8 30 30 H 1.08997 * 109.47232 * 304.00399 * 1 2 3 31 31 H 1.09009 * 109.46439 * 64.00406 * 1 2 3 32 32 H 1.09000 * 109.47160 * 183.99739 * 1 2 3 33 33 H 1.08998 * 109.52990 * 298.04605 * 5 4 2 34 34 H 1.09004 * 109.57374 * 177.88351 * 5 4 2 35 35 H 1.09006 * 109.52230 * 184.78268 * 6 5 4 36 36 H 1.08997 * 109.58097 * 64.61946 * 6 5 4 37 37 H 1.09005 * 110.07241 * 29.49788 * 13 12 10 38 38 H 1.08988 * 110.07761 * 267.95232 * 13 12 10 39 39 H 1.09001 * 110.07412 * 251.08215 * 16 14 13 40 40 H 1.08999 * 110.07427 * 12.62519 * 16 14 13 41 41 H 0.97001 * 120.00179 * 180.02562 * 21 20 18 42 42 H 1.08999 * 108.72973 * 271.19092 * 26 17 16 43 43 H 1.08999 * 111.06576 * 149.89636 * 26 17 16 44 44 H 1.08997 * 109.47159 * 302.06006 * 28 27 26 45 45 H 1.08998 * 109.46904 * 62.06295 * 28 27 26 46 46 H 1.09006 * 109.47144 * 182.05671 * 28 27 26 47 47 H 1.08999 * 108.72987 * 92.01736 * 29 12 10 48 48 H 1.09003 * 111.06488 * 330.71864 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 8 2.0083 -0.6776 -1.1658 5 6 3.4345 -0.7712 -1.2290 6 6 3.9463 -1.4964 0.0190 7 8 3.4680 -0.8188 1.1848 8 6 2.0417 -0.7252 1.2481 9 1 1.7523 -0.1676 2.1389 10 6 1.4482 -2.1092 1.3052 11 8 1.9563 -3.0134 0.6765 12 7 0.3528 -2.3422 2.0550 13 6 -0.3191 -1.3874 2.9517 14 6 -1.8116 -1.7574 2.9391 15 1 -2.2599 -1.6693 3.9288 16 6 -2.5586 -0.9111 1.8948 17 7 -3.3784 -1.8489 1.1101 18 6 -4.5870 -1.5855 0.5225 19 1 -5.0980 -2.3590 -0.0315 20 6 -5.1551 -0.3244 0.6389 21 7 -4.5320 0.6184 1.3136 22 14 -6.8034 0.0351 -0.1633 23 1 -7.8970 -0.2734 0.7928 24 1 -6.8671 1.4695 -0.5422 25 1 -6.9564 -0.8051 -1.3782 26 6 -2.6653 -3.1287 1.0922 27 6 -1.8684 -3.2097 2.4050 28 6 -2.5194 -4.1636 3.4086 29 6 -0.4076 -3.5931 2.1152 30 1 -0.3633 0.5747 0.8519 31 1 -0.3632 0.4505 -0.9238 32 1 -0.3633 -1.0252 0.0716 33 1 3.8639 0.2299 -1.2704 34 1 3.7248 -1.3292 -2.1192 35 1 5.0363 -1.4964 0.0191 36 1 3.5820 -2.5237 0.0196 37 1 -0.1827 -0.3700 2.5848 38 1 0.0804 -1.4780 3.9617 39 1 -3.1976 -0.1814 2.3922 40 1 -1.8456 -0.4035 1.2452 41 1 -4.9292 1.4996 1.3952 42 1 -1.9853 -3.1385 0.2404 43 1 -3.3618 -3.9644 1.0252 44 1 -3.5387 -3.8357 3.6129 45 1 -2.5382 -5.1709 2.9928 46 1 -1.9451 -4.1636 4.3351 47 1 -0.0130 -4.2038 2.9272 48 1 -0.3434 -4.1364 1.1725 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091751394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:23 Heat of formation + Delta-G solvation = -94.636076 kcal Electronic energy + Delta-G solvation = -30794.442337 eV Core-core repulsion = 26850.225448 eV Total energy + Delta-G solvation = -3944.216889 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.32117 -40.96889 -39.07426 -37.18547 -36.60942 -34.91494 -33.88756 -32.41580 -31.69424 -30.01861 -28.86259 -27.82101 -26.88432 -26.61461 -24.34513 -24.25382 -22.84420 -21.88612 -20.50696 -19.79527 -18.81232 -18.48099 -18.15479 -17.45274 -17.26817 -16.78829 -16.74648 -16.31454 -16.13950 -15.54086 -15.51197 -15.05735 -14.72531 -14.59647 -14.53444 -13.94284 -13.77559 -13.60554 -13.49483 -13.34831 -13.26105 -13.04798 -13.02221 -13.00772 -12.76894 -12.74424 -12.57303 -12.26826 -12.15515 -11.99754 -11.77392 -11.54538 -11.43769 -11.36868 -11.11276 -10.75828 -10.66408 -9.89110 -9.65931 -8.81613 -7.69883 -5.15661 1.36580 1.48777 1.49360 1.57302 1.87696 2.51934 2.60926 2.65997 3.23652 3.35052 3.37677 3.53205 3.63343 3.80508 3.90170 3.98992 4.00290 4.09047 4.13658 4.25017 4.30663 4.33340 4.39367 4.42787 4.58834 4.63199 4.72812 4.75544 4.76626 4.80034 4.82884 4.91452 4.94905 4.98344 5.11786 5.19007 5.20520 5.24240 5.35698 5.50238 5.55353 5.75802 5.77673 5.91327 6.04289 6.44770 6.47717 7.00952 7.18512 7.84506 8.50579 9.27570 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015511 B = 0.004610 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.782993 B = 6072.079141 C = 7119.833898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.071 3.929 3 H 0.102 0.898 4 O -0.397 6.397 5 C 0.026 3.974 6 C -0.007 4.007 7 O -0.363 6.363 8 C 0.048 3.952 9 H 0.153 0.847 10 C 0.515 3.485 11 O -0.565 6.565 12 N -0.605 5.605 13 C 0.106 3.894 14 C -0.110 4.110 15 H 0.100 0.900 16 C 0.132 3.868 17 N -0.613 5.613 18 C -0.234 4.234 19 H 0.071 0.929 20 C -0.055 4.055 21 N -0.938 5.938 22 Si 0.970 3.030 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.279 1.279 26 C 0.145 3.855 27 C -0.076 4.076 28 C -0.116 4.116 29 C 0.124 3.876 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.021 0.979 41 H 0.248 0.752 42 H -0.006 1.006 43 H 0.040 0.960 44 H 0.048 0.952 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.085 0.915 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.581 -2.147 4.757 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.013 3.987 3 H 0.120 0.880 4 O -0.317 6.317 5 C -0.050 4.050 6 C -0.083 4.083 7 O -0.281 6.281 8 C -0.013 4.013 9 H 0.171 0.829 10 C 0.305 3.695 11 O -0.445 6.445 12 N -0.338 5.338 13 C -0.016 4.016 14 C -0.130 4.130 15 H 0.118 0.882 16 C 0.007 3.993 17 N -0.337 5.337 18 C -0.363 4.363 19 H 0.089 0.911 20 C -0.249 4.249 21 N -0.588 5.588 22 Si 0.799 3.201 23 H -0.212 1.212 24 H -0.220 1.220 25 H -0.205 1.205 26 C 0.019 3.981 27 C -0.078 4.078 28 C -0.173 4.173 29 C 0.001 3.999 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.133 0.867 35 H 0.146 0.854 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.107 0.893 40 H 0.039 0.961 41 H 0.058 0.942 42 H 0.011 0.989 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.103 0.897 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.791 -2.430 4.315 15.598 hybrid contribution -1.186 0.151 -0.888 1.490 sum 13.605 -2.279 3.427 14.214 Atomic orbital electron populations 1.21955 0.91784 1.02520 1.03513 1.22716 0.95730 0.96180 0.84047 0.88022 1.88145 1.22602 1.78790 1.42119 1.23372 0.80379 1.01592 0.99636 1.23911 1.01242 0.98564 0.84569 1.88128 1.17622 1.77936 1.44390 1.22964 0.83134 0.92708 1.02469 0.82928 1.21217 0.79728 0.91200 0.77385 1.90509 1.60879 1.47548 1.45539 1.48495 1.26525 1.15282 1.43475 1.22397 0.91265 0.93359 0.94568 1.22996 0.94652 0.94610 1.00744 0.88206 1.22115 0.92963 0.92781 0.91413 1.44539 1.20057 1.08028 1.61034 1.19336 0.95017 0.96445 1.25516 0.91066 1.25386 1.01803 0.95883 1.01779 1.69818 1.39112 1.03234 1.46593 0.85203 0.80186 0.76639 0.78029 1.21247 1.21966 1.20485 1.21361 0.93414 0.89073 0.94241 1.22075 0.93495 0.96183 0.96068 1.21593 1.00124 0.97794 0.97798 1.21872 0.89753 0.86581 1.01689 0.88895 0.92304 0.93554 0.90697 0.86693 0.85411 0.89890 0.89658 0.87940 0.89274 0.96107 0.94233 0.98877 0.94148 0.93332 0.91694 0.90219 0.89650 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.60 6.96 71.98 0.50 -4.10 16 2 C 0.07 2.00 3.15 30.64 0.10 2.10 16 3 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 4 O -0.40 -12.57 10.11 -135.23 -1.37 -13.94 16 5 C 0.03 0.62 7.05 72.03 0.51 1.13 16 6 C -0.01 -0.18 6.58 72.03 0.47 0.30 16 7 O -0.36 -9.74 10.65 -124.41 -1.32 -11.06 16 8 C 0.05 1.30 2.95 29.90 0.09 1.39 16 9 H 0.15 3.23 6.59 -2.39 -0.02 3.21 16 10 C 0.52 16.63 5.52 87.66 0.48 17.12 16 11 O -0.56 -21.55 13.67 13.42 0.18 -21.37 16 12 N -0.60 -17.91 2.66 -816.92 -2.18 -20.09 16 13 C 0.11 2.71 5.64 86.51 0.49 3.20 16 14 C -0.11 -3.51 3.63 -9.64 -0.04 -3.54 16 15 H 0.10 2.97 7.88 -2.39 -0.02 2.95 16 16 C 0.13 5.75 5.74 86.51 0.50 6.25 16 17 N -0.61 -30.10 3.37 -697.11 -2.35 -32.45 16 18 C -0.23 -12.77 10.31 84.03 0.87 -11.90 16 19 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 20 C -0.06 -3.01 5.49 84.86 0.47 -2.55 16 21 N -0.94 -52.13 10.08 21.65 0.22 -51.91 16 22 Si 0.97 44.61 29.55 68.60 2.03 46.64 16 23 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 C 0.15 6.01 6.34 86.64 0.55 6.56 16 27 C -0.08 -2.40 1.10 -51.02 -0.06 -2.45 16 28 C -0.12 -2.98 8.43 71.98 0.61 -2.37 16 29 C 0.12 3.69 5.90 86.64 0.51 4.20 16 30 H 0.09 2.81 5.75 -2.39 -0.01 2.79 16 31 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.05 1.79 5.90 -2.39 -0.01 1.78 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.13 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.08 2.56 5.05 -2.40 -0.01 2.55 16 37 H 0.09 2.09 4.52 -2.38 -0.01 2.08 16 38 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.09 4.52 5.45 -2.39 -0.01 4.50 16 40 H 0.02 0.93 3.62 -2.39 -0.01 0.92 16 41 H 0.25 13.43 8.31 -92.71 -0.77 12.66 16 42 H -0.01 -0.29 7.46 -2.39 -0.02 -0.31 16 43 H 0.04 1.64 7.82 -2.39 -0.02 1.63 16 44 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 47 H 0.09 2.13 7.87 -2.39 -0.02 2.11 16 48 H 0.06 1.97 7.41 -2.39 -0.02 1.95 16 Total: -1.00 -68.55 350.97 2.22 -66.33 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.97 Total: 22.53 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 6.04 Total: 15.33 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -4.31 Total: -104.45 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -2.51 Total: -46.38 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -68.55 2.22 -66.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091751394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.306 kcal (2) G-P(sol) polarization free energy of solvation -68.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds