Wall clock time and date at job start Tue Mar 31 2020 13:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.63884 * 2 1 4 4 C 1.54320 * 110.72194 * 236.85979 * 2 1 3 5 5 N 1.47020 * 107.27107 * 219.44468 * 4 2 1 6 6 C 1.36940 * 125.64641 * 178.90623 * 5 4 2 7 7 H 1.07998 * 119.99654 * 180.02562 * 6 5 4 8 8 C 1.38805 * 120.00172 * 0.02562 * 6 5 4 9 9 N 1.31616 * 120.00213 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00013 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47123 * 60.00097 * 10 8 6 12 12 H 1.48499 * 109.47281 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47202 * 300.00172 * 10 8 6 14 14 C 1.47425 * 108.70099 * 358.93766 * 5 4 2 15 15 C 1.54907 * 104.83142 * 24.13000 * 14 5 4 16 16 H 1.09000 * 111.00135 * 81.06852 * 15 14 5 17 17 C 1.52999 * 111.00048 * 204.91325 * 15 14 5 18 18 C 1.53001 * 109.47523 * 287.19876 * 17 15 14 19 19 N 1.46496 * 109.47140 * 180.02562 * 18 17 15 20 20 C 1.34779 * 119.99681 * 179.97438 * 19 18 17 21 21 O 1.21283 * 119.99977 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.99897 * 180.02562 * 20 19 18 23 23 C 1.52993 * 109.47135 * 180.02562 * 22 20 19 24 24 H 1.09000 * 110.62955 * 51.90639 * 23 22 20 25 25 C 1.54372 * 110.69997 * 288.62177 * 23 22 20 26 26 O 1.45950 * 105.07072 * 223.78806 * 25 23 22 27 27 C 1.34570 * 108.39705 * 32.44689 * 26 25 23 28 28 O 1.20828 * 125.94411 * 146.68316 * 27 26 25 29 29 C 1.51507 * 108.10927 * 326.65553 * 27 26 25 30 30 H 1.09001 * 109.47002 * 181.68599 * 1 2 3 31 31 H 1.08993 * 109.46955 * 301.69036 * 1 2 3 32 32 H 1.09000 * 109.47050 * 61.68865 * 1 2 3 33 33 H 1.09009 * 109.88244 * 338.86071 * 4 2 1 34 34 H 1.08999 * 109.88547 * 99.86758 * 4 2 1 35 35 H 0.97002 * 119.99866 * 180.02562 * 9 8 6 36 36 H 1.09002 * 110.36463 * 142.97358 * 14 5 4 37 37 H 1.09001 * 110.36471 * 265.17904 * 14 5 4 38 38 H 1.08992 * 109.47475 * 47.19905 * 17 15 14 39 39 H 1.09006 * 109.47078 * 167.20030 * 17 15 14 40 40 H 1.09008 * 109.47083 * 300.00202 * 18 17 15 41 41 H 1.08997 * 109.46832 * 59.99720 * 18 17 15 42 42 H 0.96993 * 120.00314 * 0.02562 * 19 18 17 43 43 H 1.09001 * 109.46726 * 299.99765 * 22 20 19 44 44 H 1.08995 * 109.47235 * 59.99711 * 22 20 19 45 45 H 1.08992 * 110.32257 * 342.69388 * 25 23 22 46 46 H 1.09004 * 110.32209 * 104.89585 * 25 23 22 47 47 H 1.09001 * 110.40778 * 261.59522 * 29 27 26 48 48 H 1.08999 * 110.40381 * 139.17236 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 3.2446 -1.5494 -0.7416 6 6 4.0036 -2.3954 -1.5055 7 1 4.8455 -2.9101 -1.0668 8 6 3.6907 -2.5912 -2.8436 9 7 2.6649 -1.9635 -3.3784 10 14 4.7257 -3.7458 -3.8855 11 1 4.6820 -5.1112 -3.3032 12 1 4.1881 -3.7798 -5.2693 13 1 6.1300 -3.2637 -3.9122 14 6 3.4633 -1.2508 0.6854 15 6 2.0790 -0.7974 1.2124 16 1 1.4452 -1.6560 1.4347 17 6 2.2278 0.1039 2.4397 18 6 2.6508 -0.7398 3.6439 19 7 2.7927 0.1232 4.8192 20 6 3.1599 -0.4058 6.0032 21 8 3.3723 -1.5963 6.0958 22 6 3.3053 0.4819 7.2124 23 6 3.7284 -0.3618 8.4165 24 1 4.6033 -0.9652 8.1742 25 6 2.5622 -1.2526 8.8955 26 8 2.5717 -1.1402 10.3506 27 6 2.9943 0.0947 10.6784 28 8 2.6298 0.7388 11.6336 29 6 4.0071 0.5364 9.6418 30 1 -0.3633 -1.0272 0.0302 31 1 -0.3633 0.5398 0.8744 32 1 -0.3633 0.4874 -0.9047 33 1 1.3130 -1.4731 -1.5801 34 1 2.3716 -0.0991 -1.9990 35 1 2.4461 -2.1007 -4.3134 36 1 3.7961 -2.1446 1.2133 37 1 4.1946 -0.4504 0.7977 38 1 2.9853 0.8626 2.2436 39 1 1.2748 0.5884 2.6524 40 1 1.8932 -1.4986 3.8401 41 1 3.6038 -1.2243 3.4312 42 1 2.6218 1.0751 4.7454 43 1 4.0628 1.2409 7.0168 44 1 2.3521 0.9660 7.4245 45 1 1.6172 -0.8874 8.4937 46 1 2.7278 -2.2872 8.5947 47 1 5.0210 0.3756 10.0084 48 1 3.8565 1.5853 9.3862 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102862354.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:52 Heat of formation + Delta-G solvation = -110.775507 kcal Electronic energy + Delta-G solvation = -27078.374315 eV Core-core repulsion = 23133.457568 eV Total energy + Delta-G solvation = -3944.916748 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.46756 -39.91868 -38.24819 -37.85351 -35.49366 -34.62449 -33.28585 -31.38568 -30.69138 -29.46129 -27.89032 -26.60068 -25.63877 -24.10539 -22.33467 -21.84568 -21.69014 -20.65146 -19.78345 -19.26210 -17.89706 -17.26240 -16.89723 -16.84932 -16.72314 -16.08872 -15.82963 -15.23841 -14.70977 -14.38288 -14.29546 -14.11369 -13.96189 -13.65643 -13.42442 -13.09053 -13.04757 -12.59084 -12.51156 -12.33246 -11.99156 -11.85244 -11.76696 -11.71187 -11.42589 -11.25540 -11.11581 -11.00891 -10.80219 -10.76157 -10.64575 -10.20494 -10.07445 -9.91986 -9.86642 -9.67148 -9.51446 -9.25291 -8.59244 -6.81689 -5.70290 -3.03550 1.48557 2.33099 2.84843 2.96843 3.40759 3.44995 3.46128 3.51988 3.74750 3.99966 4.16358 4.50247 4.52156 4.68663 4.78133 4.83815 4.86497 5.02126 5.03412 5.08605 5.22390 5.26006 5.43773 5.46952 5.50571 5.56965 5.64019 5.69125 5.87154 5.93971 6.04509 6.17354 6.20595 6.24420 6.26395 6.32721 6.48765 6.60791 6.63203 6.76770 6.98164 6.98596 7.22255 7.57720 7.64638 7.84528 7.93073 8.27515 9.23511 9.83954 10.50247 11.41226 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.024984 B = 0.001923 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.452156 B =14558.600641 C =15276.095444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.064 0.936 4 C 0.183 3.817 5 N -0.607 5.607 6 C -0.228 4.228 7 H 0.076 0.924 8 C -0.009 4.009 9 N -0.923 5.923 10 Si 0.912 3.088 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.140 3.860 15 C -0.095 4.095 16 H 0.076 0.924 17 C -0.116 4.116 18 C 0.117 3.883 19 N -0.727 5.727 20 C 0.507 3.493 21 O -0.538 6.538 22 C -0.137 4.137 23 C -0.106 4.106 24 H 0.112 0.888 25 C 0.063 3.937 26 O -0.354 6.354 27 C 0.484 3.516 28 O -0.452 6.452 29 C -0.184 4.184 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.039 0.961 35 H 0.252 0.748 36 H 0.036 0.964 37 H 0.016 0.984 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.400 0.600 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.190 9.074 21.504 23.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.082 0.918 4 C 0.058 3.942 5 N -0.333 5.333 6 C -0.356 4.356 7 H 0.094 0.906 8 C -0.206 4.206 9 N -0.570 5.570 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.013 3.987 15 C -0.115 4.115 16 H 0.095 0.905 17 C -0.155 4.155 18 C -0.006 4.006 19 N -0.379 5.379 20 C 0.293 3.707 21 O -0.415 6.415 22 C -0.177 4.177 23 C -0.125 4.125 24 H 0.131 0.869 25 C -0.010 4.010 26 O -0.272 6.272 27 C 0.324 3.676 28 O -0.335 6.335 29 C -0.222 4.222 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.034 0.966 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.234 0.766 43 H 0.124 0.876 44 H 0.117 0.883 45 H 0.101 0.899 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.280 8.252 21.903 23.441 hybrid contribution 0.540 -0.036 -0.926 1.072 sum -0.740 8.216 20.977 22.541 Atomic orbital electron populations 1.21676 0.95574 1.01398 1.00402 1.22480 0.94941 0.98911 0.97063 0.91802 1.21198 0.89101 0.93076 0.90779 1.44461 1.32579 1.51496 1.04750 1.19016 1.07596 1.17748 0.91242 0.90565 1.24800 0.98467 1.00369 0.96923 1.69955 1.28815 1.45568 1.12686 0.86205 0.79461 0.80581 0.79550 1.21172 1.21622 1.21219 1.21612 0.93265 0.97048 0.86725 1.22331 0.98911 0.97565 0.92699 0.90532 1.21746 1.01422 0.98483 0.93800 1.21524 1.02351 0.93211 0.83517 1.46106 1.69867 1.12223 1.09668 1.20521 0.76851 0.88930 0.84388 1.90740 1.49787 1.15923 1.85072 1.21809 1.04554 0.98810 0.92550 1.22177 1.00664 0.96531 0.93156 0.86941 1.24221 0.98581 1.03873 0.74371 1.87321 1.81977 1.31895 1.25981 1.23310 0.79895 0.79381 0.84999 1.90719 1.58511 1.53983 1.30262 1.23036 1.01468 1.02760 0.94973 0.92819 0.93898 0.92906 0.93479 0.94256 0.93765 0.94536 0.96608 0.91328 0.91637 0.91376 0.90877 0.76590 0.87580 0.88311 0.89922 0.86088 0.86294 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.13 37.16 0.34 -1.62 16 2 C -0.11 -1.98 3.01 -88.79 -0.27 -2.25 16 3 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 4 C 0.18 4.33 4.97 -3.07 -0.02 4.32 16 5 N -0.61 -15.32 3.39 -170.07 -0.58 -15.90 16 6 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 7 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 8 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 9 N -0.92 -27.02 10.31 55.49 0.57 -26.45 16 10 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.14 2.76 6.18 -2.53 -0.02 2.75 16 15 C -0.10 -1.49 2.45 -88.48 -0.22 -1.71 16 16 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 17 C -0.12 -1.28 4.84 -26.73 -0.13 -1.41 16 18 C 0.12 1.26 5.58 -4.04 -0.02 1.23 16 19 N -0.73 -5.66 5.56 -60.29 -0.33 -5.99 16 20 C 0.51 4.21 7.66 -10.98 -0.08 4.13 16 21 O -0.54 -6.63 15.27 5.56 0.08 -6.54 16 22 C -0.14 -0.57 4.90 -27.88 -0.14 -0.70 16 23 C -0.11 -0.54 2.75 -89.13 -0.25 -0.79 16 24 H 0.11 0.64 7.89 -51.93 -0.41 0.23 16 25 C 0.06 0.43 6.61 37.88 0.25 0.68 16 26 O -0.35 -3.30 11.17 -39.75 -0.44 -3.74 16 27 C 0.48 4.29 8.50 36.40 0.31 4.60 16 28 O -0.45 -5.61 18.00 -18.32 -0.33 -5.94 16 29 C -0.18 -0.84 6.61 -26.71 -0.18 -1.01 16 30 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 1.24 7.06 -51.92 -0.37 0.88 16 34 H 0.04 1.04 7.50 -51.93 -0.39 0.65 16 35 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.02 0.32 7.91 -51.93 -0.41 -0.10 16 38 H 0.07 0.74 7.96 -51.93 -0.41 0.33 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 41 H 0.07 0.93 7.75 -51.93 -0.40 0.53 16 42 H 0.40 1.94 8.47 -40.82 -0.35 1.60 16 43 H 0.11 0.23 8.14 -51.93 -0.42 -0.20 16 44 H 0.10 0.25 7.96 -51.93 -0.41 -0.17 16 45 H 0.08 0.48 7.69 -51.93 -0.40 0.08 16 46 H 0.12 0.86 8.07 -51.93 -0.42 0.44 16 47 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.11 0.32 7.74 -51.93 -0.40 -0.08 16 LS Contribution 386.88 15.07 5.83 5.83 Total: -1.00 -34.98 386.88 -9.02 -44.00 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -8.13 Total: -3.70 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -0.66 Total: 1.34 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.34 Total: -48.34 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.69 Total: -16.23 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.98 -9.02 -44.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102862354.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.777 kcal (2) G-P(sol) polarization free energy of solvation -34.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds