Wall clock time and date at job start Tue Mar 31 2020 13:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.37442 * 2 1 4 4 C 1.54012 * 110.32346 * 237.81449 * 2 1 3 5 5 N 1.47485 * 107.08003 * 242.41518 * 4 2 1 6 6 C 1.34783 * 127.03230 * 154.51687 * 5 4 2 7 7 O 1.21279 * 120.00060 * 180.02562 * 6 5 4 8 8 C 1.50705 * 119.99626 * 0.02696 * 6 5 4 9 9 C 1.53001 * 109.46691 * 179.97438 * 8 6 5 10 10 H 1.08998 * 110.77394 * 51.47118 * 9 8 6 11 11 C 1.54576 * 110.86726 * 287.72256 * 9 8 6 12 12 O 1.46007 * 104.37134 * 214.81712 * 11 9 8 13 13 C 1.34062 * 109.80332 * 30.92313 * 12 11 9 14 14 O 1.20833 * 125.09114 * 159.09430 * 13 12 11 15 15 C 1.51323 * 109.81703 * 338.82407 * 13 12 11 16 16 C 1.48115 * 105.93815 * 334.77937 * 5 4 2 17 17 C 1.54604 * 103.42018 * 39.02540 * 16 5 4 18 18 H 1.08997 * 110.57564 * 81.17081 * 17 16 5 19 19 C 1.52999 * 110.98845 * 204.37647 * 17 16 5 20 20 C 1.53000 * 109.46804 * 288.65106 * 19 17 16 21 21 N 1.46506 * 109.46637 * 179.97438 * 20 19 17 22 22 C 1.36947 * 119.99482 * 180.02562 * 21 20 19 23 23 H 1.07996 * 120.00173 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99327 * 180.02562 * 22 21 20 25 25 N 1.31615 * 120.00383 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99541 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46965 * 90.00250 * 26 24 22 28 28 H 1.48501 * 109.47041 * 209.99964 * 26 24 22 29 29 H 1.48504 * 109.47217 * 330.00068 * 26 24 22 30 30 H 1.08995 * 109.47465 * 180.72885 * 1 2 3 31 31 H 1.08997 * 109.46860 * 300.73360 * 1 2 3 32 32 H 1.09002 * 109.46968 * 60.73165 * 1 2 3 33 33 H 1.08996 * 109.91053 * 123.05628 * 4 2 1 34 34 H 1.09002 * 110.07450 * 1.86205 * 4 2 1 35 35 H 1.09001 * 109.47401 * 60.00069 * 8 6 5 36 36 H 1.08998 * 109.47054 * 299.99163 * 8 6 5 37 37 H 1.09002 * 110.43826 * 333.72653 * 11 9 8 38 38 H 1.08997 * 110.44432 * 96.24943 * 11 9 8 39 39 H 1.09002 * 110.37081 * 121.37798 * 15 13 12 40 40 H 1.09000 * 110.37051 * 243.59884 * 15 13 12 41 41 H 1.08998 * 110.66658 * 157.50784 * 16 5 4 42 42 H 1.09003 * 110.66356 * 280.62787 * 16 5 4 43 43 H 1.08999 * 109.47051 * 48.64946 * 19 17 16 44 44 H 1.08999 * 109.47104 * 168.65103 * 19 17 16 45 45 H 1.08993 * 109.47524 * 300.00023 * 20 19 17 46 46 H 1.09008 * 109.47353 * 60.00357 * 20 19 17 47 47 H 0.96999 * 120.00137 * 359.97438 * 21 20 19 48 48 H 0.97005 * 120.00074 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0649 -0.7693 -1.2223 5 7 2.8275 -1.9224 -0.7086 6 6 3.0611 -3.0886 -1.3427 7 8 3.7088 -3.9566 -0.7967 8 6 2.5174 -3.3140 -2.7300 9 6 2.9231 -4.7067 -3.2166 10 1 2.6596 -5.4656 -2.4799 11 6 4.4319 -4.7560 -3.5490 12 8 4.5227 -5.6655 -4.6875 13 6 3.4049 -5.5852 -5.4233 14 8 3.3098 -5.9184 -6.5808 15 6 2.2784 -5.0209 -4.5851 16 6 3.2788 -1.5393 0.6491 17 6 2.0670 -0.7726 1.2270 18 1 1.3173 -1.4686 1.6033 19 6 2.5053 0.1957 2.3275 20 6 2.9135 -0.5966 3.5710 21 7 3.3337 0.3306 4.6246 22 6 3.7459 -0.1530 5.8378 23 1 3.7608 -1.2177 6.0179 24 6 4.1437 0.7256 6.8362 25 7 4.1251 2.0232 6.6168 26 14 4.7053 0.0661 8.4912 27 1 6.1711 -0.1694 8.4587 28 1 4.3862 1.0550 9.5522 29 1 4.0049 -1.2115 8.7785 30 1 -0.3634 -1.0275 0.0131 31 1 -0.3633 0.5252 0.8833 32 1 -0.3633 0.5024 -0.8965 33 1 2.7180 -0.1243 -1.8101 34 1 1.2353 -1.1173 -1.8377 35 1 2.9227 -2.5610 -3.4059 36 1 1.4302 -3.2378 -2.7110 37 1 4.7945 -3.7644 -3.8199 38 1 4.9953 -5.1504 -2.7034 39 1 1.8877 -4.1099 -5.0385 40 1 1.4838 -5.7583 -4.4716 41 1 3.4934 -2.4249 1.2473 42 1 4.1523 -0.8895 0.5951 43 1 3.3533 0.7842 1.9771 44 1 1.6789 0.8616 2.5759 45 1 2.0656 -1.1851 3.9214 46 1 3.7400 -1.2625 3.3226 47 1 3.3208 1.2869 4.4627 48 1 4.4027 2.6371 7.3146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104071144.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:44 Heat of formation + Delta-G solvation = -118.945685 kcal Electronic energy + Delta-G solvation = -27266.860632 eV Core-core repulsion = 23321.589599 eV Total energy + Delta-G solvation = -3945.271033 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.47831 -40.37057 -38.49027 -37.74534 -35.20835 -34.72674 -33.35897 -32.13499 -30.47082 -29.50991 -28.02522 -26.79719 -26.53984 -24.26852 -22.66150 -21.84386 -21.71610 -20.84169 -20.17743 -19.47750 -17.89812 -17.15787 -17.15697 -17.03840 -16.67944 -16.15229 -15.88275 -14.88723 -14.82590 -14.67400 -14.36810 -14.09294 -13.92416 -13.87234 -13.41001 -13.31802 -13.27404 -13.10793 -12.94661 -12.54131 -12.46119 -12.26924 -11.84627 -11.77249 -11.73855 -11.44750 -11.29017 -11.06457 -11.01681 -10.84925 -10.66852 -10.64048 -10.51315 -10.33880 -10.09190 -10.00019 -9.68775 -8.93491 -8.88099 -6.93434 -5.77883 -3.06480 1.63799 2.30136 2.60757 2.87231 3.43145 3.46432 3.48345 3.49875 3.65634 3.96381 4.09181 4.27338 4.31657 4.51725 4.56441 4.61936 4.69914 4.77091 4.84608 4.89192 4.98818 5.06811 5.17316 5.20581 5.25986 5.26392 5.39931 5.46732 5.49296 5.55654 5.65486 5.69449 5.77884 5.80053 5.92487 5.98001 6.08164 6.22296 6.32887 6.33350 6.36457 6.80806 6.84584 7.03326 7.26926 7.69448 7.83510 8.41347 9.52413 10.10348 10.44685 11.45047 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.002056 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.737741 B =13618.013145 C =14650.392160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.089 0.911 4 C 0.102 3.898 5 N -0.620 5.620 6 C 0.528 3.472 7 O -0.538 6.538 8 C -0.129 4.129 9 C -0.108 4.108 10 H 0.111 0.889 11 C 0.061 3.939 12 O -0.347 6.347 13 C 0.483 3.517 14 O -0.461 6.461 15 C -0.184 4.184 16 C 0.108 3.892 17 C -0.091 4.091 18 H 0.083 0.917 19 C -0.115 4.115 20 C 0.152 3.848 21 N -0.734 5.734 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.017 0.983 46 H 0.018 0.982 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.029 -7.122 -24.062 26.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.108 0.892 4 C -0.021 4.021 5 N -0.354 5.354 6 C 0.317 3.683 7 O -0.416 6.416 8 C -0.169 4.169 9 C -0.127 4.127 10 H 0.130 0.870 11 C -0.013 4.013 12 O -0.263 6.263 13 C 0.323 3.677 14 O -0.344 6.344 15 C -0.223 4.223 16 C -0.014 4.014 17 C -0.111 4.111 18 H 0.102 0.898 19 C -0.153 4.153 20 C 0.024 3.976 21 N -0.378 5.378 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.103 0.897 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.473 -8.084 -24.277 26.656 hybrid contribution 0.153 0.283 1.053 1.101 sum -7.320 -7.801 -23.223 25.569 Atomic orbital electron populations 1.21841 0.94020 1.01941 1.02210 1.22171 0.96494 0.99903 0.93730 0.89235 1.22278 0.95421 0.87417 0.96953 1.48857 1.53550 1.14720 1.18248 1.20129 0.80344 0.80462 0.87407 1.90742 1.40537 1.42428 1.67869 1.21698 1.03519 0.97192 0.94501 1.22293 0.95004 0.98510 0.96848 0.87043 1.24362 0.97028 0.93284 0.86611 1.87106 1.41251 1.59081 1.38870 1.23104 0.84075 0.74587 0.85914 1.90728 1.83732 1.45787 1.14200 1.22991 0.99263 1.04803 0.95200 1.22601 0.97051 1.00024 0.81711 1.22285 0.96976 0.97334 0.94487 0.89847 1.21723 1.01334 0.97632 0.94596 1.20675 0.96404 0.92819 0.87695 1.42365 1.79213 1.05124 1.11120 1.19242 1.35764 0.92138 0.89877 0.91198 1.24747 1.02464 0.95335 0.98558 1.69657 1.54321 1.00700 1.33635 0.86184 0.78505 0.77627 0.83858 1.21694 1.21763 1.20757 0.92638 0.91755 0.92594 0.91316 0.90755 0.88263 0.87692 0.89683 0.85956 0.86744 0.86437 0.89397 0.90524 0.91615 0.91353 0.96503 0.96369 0.78338 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.90 37.16 0.33 -0.65 16 2 C -0.10 -0.81 3.17 -89.24 -0.28 -1.09 16 3 H 0.09 0.70 7.85 -51.93 -0.41 0.29 16 4 C 0.10 0.65 6.42 -2.98 -0.02 0.63 16 5 N -0.62 -5.63 3.29 -169.97 -0.56 -6.19 16 6 C 0.53 4.85 7.73 -10.98 -0.08 4.77 16 7 O -0.54 -6.99 15.35 5.56 0.09 -6.90 16 8 C -0.13 -0.61 4.09 -27.88 -0.11 -0.72 16 9 C -0.11 -0.58 2.74 -89.01 -0.24 -0.83 16 10 H 0.11 0.70 7.87 -51.93 -0.41 0.29 16 11 C 0.06 0.42 6.78 37.99 0.26 0.68 16 12 O -0.35 -3.33 11.07 -38.47 -0.43 -3.76 16 13 C 0.48 4.43 8.57 36.31 0.31 4.74 16 14 O -0.46 -5.91 18.00 -18.42 -0.33 -6.24 16 15 C -0.18 -0.87 6.52 -26.79 -0.17 -1.04 16 16 C 0.11 1.22 5.93 -2.31 -0.01 1.21 16 17 C -0.09 -0.98 2.56 -88.93 -0.23 -1.21 16 18 H 0.08 0.95 7.86 -51.93 -0.41 0.54 16 19 C -0.11 -1.62 4.71 -26.73 -0.13 -1.75 16 20 C 0.15 2.91 6.15 -4.04 -0.02 2.89 16 21 N -0.73 -18.39 5.60 -59.90 -0.34 -18.72 16 22 C -0.24 -6.71 9.99 -15.05 -0.15 -6.86 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 25 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 26 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 30 H 0.05 0.38 8.13 -51.93 -0.42 -0.04 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.32 7.08 -51.93 -0.37 -0.05 16 35 H 0.10 0.29 7.93 -51.93 -0.41 -0.12 16 36 H 0.10 0.30 7.91 -51.93 -0.41 -0.11 16 37 H 0.08 0.47 7.77 -51.93 -0.40 0.06 16 38 H 0.12 0.93 7.82 -51.93 -0.41 0.53 16 39 H 0.11 0.32 7.80 -51.93 -0.40 -0.08 16 40 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 1.17 7.83 -51.93 -0.41 0.77 16 42 H 0.08 0.89 7.95 -51.93 -0.41 0.47 16 43 H 0.07 0.94 8.00 -51.93 -0.42 0.52 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.02 0.36 7.68 -51.92 -0.40 -0.04 16 47 H 0.38 10.00 7.67 -40.82 -0.31 9.69 16 48 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -35.26 389.15 -8.74 -44.00 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.08 Total: 1.71 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -0.66 Total: 0.23 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.17 Total: -52.32 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.67 Total: -16.90 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.26 -8.74 -44.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104071144.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.943 kcal (2) G-P(sol) polarization free energy of solvation -35.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds