Wall clock time and date at job start Tue Mar 31 2020 13:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.37442 * 2 1 4 4 C 1.54012 * 110.32346 * 237.81449 * 2 1 3 5 5 N 1.47485 * 107.08003 * 242.41518 * 4 2 1 6 6 C 1.34783 * 127.03230 * 154.51687 * 5 4 2 7 7 O 1.21279 * 120.00060 * 180.02562 * 6 5 4 8 8 C 1.50705 * 119.99626 * 0.02696 * 6 5 4 9 9 C 1.53001 * 109.46691 * 179.97438 * 8 6 5 10 10 H 1.08998 * 110.77394 * 51.47118 * 9 8 6 11 11 C 1.54576 * 110.86726 * 287.72256 * 9 8 6 12 12 O 1.46007 * 104.37134 * 214.81712 * 11 9 8 13 13 C 1.34062 * 109.80332 * 30.92313 * 12 11 9 14 14 O 1.20833 * 125.09114 * 159.09430 * 13 12 11 15 15 C 1.51323 * 109.81703 * 338.82407 * 13 12 11 16 16 C 1.48115 * 105.93815 * 334.77937 * 5 4 2 17 17 C 1.54604 * 103.42018 * 39.02540 * 16 5 4 18 18 H 1.08997 * 110.57564 * 81.17081 * 17 16 5 19 19 C 1.52999 * 110.98845 * 204.37647 * 17 16 5 20 20 C 1.53000 * 109.46804 * 288.65106 * 19 17 16 21 21 N 1.46506 * 109.46637 * 179.97438 * 20 19 17 22 22 C 1.36947 * 119.99482 * 180.02562 * 21 20 19 23 23 H 1.07996 * 120.00173 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99327 * 180.02562 * 22 21 20 25 25 N 1.31615 * 120.00383 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99541 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46965 * 90.00250 * 26 24 22 28 28 H 1.48501 * 109.47041 * 209.99964 * 26 24 22 29 29 H 1.48504 * 109.47217 * 330.00068 * 26 24 22 30 30 H 1.08995 * 109.47465 * 180.72885 * 1 2 3 31 31 H 1.08997 * 109.46860 * 300.73360 * 1 2 3 32 32 H 1.09002 * 109.46968 * 60.73165 * 1 2 3 33 33 H 1.08996 * 109.91053 * 123.05628 * 4 2 1 34 34 H 1.09002 * 110.07450 * 1.86205 * 4 2 1 35 35 H 1.09001 * 109.47401 * 60.00069 * 8 6 5 36 36 H 1.08998 * 109.47054 * 299.99163 * 8 6 5 37 37 H 1.09002 * 110.43826 * 333.72653 * 11 9 8 38 38 H 1.08997 * 110.44432 * 96.24943 * 11 9 8 39 39 H 1.09002 * 110.37081 * 121.37798 * 15 13 12 40 40 H 1.09000 * 110.37051 * 243.59884 * 15 13 12 41 41 H 1.08998 * 110.66658 * 157.50784 * 16 5 4 42 42 H 1.09003 * 110.66356 * 280.62787 * 16 5 4 43 43 H 1.08999 * 109.47051 * 48.64946 * 19 17 16 44 44 H 1.08999 * 109.47104 * 168.65103 * 19 17 16 45 45 H 1.08993 * 109.47524 * 300.00023 * 20 19 17 46 46 H 1.09008 * 109.47353 * 60.00357 * 20 19 17 47 47 H 0.96999 * 120.00137 * 359.97438 * 21 20 19 48 48 H 0.97005 * 120.00074 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0649 -0.7693 -1.2223 5 7 2.8275 -1.9224 -0.7086 6 6 3.0611 -3.0886 -1.3427 7 8 3.7088 -3.9566 -0.7967 8 6 2.5174 -3.3140 -2.7300 9 6 2.9231 -4.7067 -3.2166 10 1 2.6596 -5.4656 -2.4799 11 6 4.4319 -4.7560 -3.5490 12 8 4.5227 -5.6655 -4.6875 13 6 3.4049 -5.5852 -5.4233 14 8 3.3098 -5.9184 -6.5808 15 6 2.2784 -5.0209 -4.5851 16 6 3.2788 -1.5393 0.6491 17 6 2.0670 -0.7726 1.2270 18 1 1.3173 -1.4686 1.6033 19 6 2.5053 0.1957 2.3275 20 6 2.9135 -0.5966 3.5710 21 7 3.3337 0.3306 4.6246 22 6 3.7459 -0.1530 5.8378 23 1 3.7608 -1.2177 6.0179 24 6 4.1437 0.7256 6.8362 25 7 4.1251 2.0232 6.6168 26 14 4.7053 0.0661 8.4912 27 1 6.1711 -0.1694 8.4587 28 1 4.3862 1.0550 9.5522 29 1 4.0049 -1.2115 8.7785 30 1 -0.3634 -1.0275 0.0131 31 1 -0.3633 0.5252 0.8833 32 1 -0.3633 0.5024 -0.8965 33 1 2.7180 -0.1243 -1.8101 34 1 1.2353 -1.1173 -1.8377 35 1 2.9227 -2.5610 -3.4059 36 1 1.4302 -3.2378 -2.7110 37 1 4.7945 -3.7644 -3.8199 38 1 4.9953 -5.1504 -2.7034 39 1 1.8877 -4.1099 -5.0385 40 1 1.4838 -5.7583 -4.4716 41 1 3.4934 -2.4249 1.2473 42 1 4.1523 -0.8895 0.5951 43 1 3.3533 0.7842 1.9771 44 1 1.6789 0.8616 2.5759 45 1 2.0656 -1.1851 3.9214 46 1 3.7400 -1.2625 3.3226 47 1 3.3208 1.2869 4.4627 48 1 4.4027 2.6371 7.3146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104071144.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:43 Heat of formation + Delta-G solvation = -141.875382 kcal Electronic energy + Delta-G solvation = -27267.854938 eV Core-core repulsion = 23321.589599 eV Total energy + Delta-G solvation = -3946.265339 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.10151 -41.09853 -39.27687 -38.51967 -36.86335 -35.26991 -34.56483 -33.39051 -31.84030 -30.23070 -28.81899 -27.78983 -27.13148 -25.78567 -24.06829 -22.53803 -22.30197 -21.95840 -20.99754 -20.09996 -19.17537 -18.51719 -17.82471 -17.68957 -17.34745 -16.91051 -16.67849 -16.59073 -15.80927 -15.55243 -15.27566 -15.18405 -14.91062 -14.73413 -14.55516 -14.44575 -14.28943 -13.78319 -13.62995 -13.33487 -13.14991 -13.02192 -12.91983 -12.88307 -12.64893 -12.39345 -12.27709 -12.26913 -12.21066 -12.12430 -11.89669 -11.57959 -11.52979 -11.48301 -11.33627 -11.23227 -10.93607 -10.80412 -9.65423 -9.01589 -7.97408 -5.26162 0.98043 1.45993 1.47647 1.56132 1.65374 1.95959 2.27346 2.54414 2.96452 3.18772 3.35996 3.46157 3.60518 3.62603 3.72282 3.79577 4.00924 4.13255 4.25228 4.27916 4.36628 4.43791 4.50351 4.52316 4.53846 4.60944 4.65256 4.69179 4.71651 4.79251 4.81799 4.84576 4.94818 4.98297 5.06589 5.10498 5.15470 5.24968 5.32854 5.38580 5.44554 5.48242 5.59814 5.73758 6.25800 6.36793 6.62390 7.16832 7.31825 8.08231 8.31603 9.25913 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.002056 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.737741 B =13618.013145 C =14650.392160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.093 0.907 4 C 0.103 3.897 5 N -0.621 5.621 6 C 0.520 3.480 7 O -0.587 6.587 8 C -0.118 4.118 9 C -0.100 4.100 10 H 0.099 0.901 11 C 0.057 3.943 12 O -0.373 6.373 13 C 0.478 3.522 14 O -0.508 6.508 15 C -0.164 4.164 16 C 0.107 3.893 17 C -0.083 4.083 18 H 0.077 0.923 19 C -0.099 4.099 20 C 0.149 3.851 21 N -0.747 5.747 22 C -0.249 4.249 23 H 0.071 0.929 24 C -0.075 4.075 25 N -0.967 5.967 26 Si 0.973 3.027 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.271 1.271 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.130 0.870 36 H 0.139 0.861 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.147 0.853 40 H 0.135 0.865 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.014 0.986 46 H 0.014 0.986 47 H 0.375 0.625 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.853 -6.620 -25.759 28.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.111 0.889 4 C -0.019 4.019 5 N -0.353 5.353 6 C 0.311 3.689 7 O -0.468 6.468 8 C -0.157 4.157 9 C -0.120 4.120 10 H 0.118 0.882 11 C -0.017 4.017 12 O -0.290 6.290 13 C 0.321 3.679 14 O -0.395 6.395 15 C -0.202 4.202 16 C -0.016 4.016 17 C -0.103 4.103 18 H 0.095 0.905 19 C -0.138 4.138 20 C 0.023 3.977 21 N -0.390 5.390 22 C -0.381 4.381 23 H 0.089 0.911 24 C -0.267 4.267 25 N -0.618 5.618 26 Si 0.802 3.198 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.196 1.196 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.127 0.873 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.165 0.835 40 H 0.153 0.847 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.032 0.968 46 H 0.032 0.968 47 H 0.207 0.793 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.322 -7.590 -25.990 28.636 hybrid contribution 0.770 0.082 1.608 1.784 sum -8.553 -7.508 -24.383 26.908 Atomic orbital electron populations 1.21827 0.92972 1.02189 1.02732 1.22154 0.97289 0.99790 0.92541 0.88910 1.22487 0.96519 0.86454 0.96414 1.48947 1.53582 1.15666 1.17149 1.21031 0.79507 0.79565 0.88804 1.90732 1.42736 1.43982 1.69352 1.21761 1.05362 0.97074 0.91463 1.22215 0.93653 0.99074 0.97015 0.88227 1.24494 0.98454 0.93348 0.85384 1.87064 1.42479 1.59784 1.39676 1.23847 0.84975 0.73489 0.85549 1.90698 1.84456 1.48012 1.16353 1.22963 0.97498 1.06341 0.93359 1.22388 0.97221 0.98672 0.83339 1.22126 0.96631 0.96758 0.94775 0.90460 1.21556 1.01200 0.97654 0.93351 1.20854 0.95806 0.92591 0.88450 1.42594 1.79240 1.05510 1.11652 1.19622 1.34990 0.92325 0.91141 0.91073 1.25571 1.03334 0.95677 1.02168 1.69802 1.55667 1.01753 1.34555 0.85150 0.77962 0.77265 0.79448 1.21385 1.21841 1.19612 0.92455 0.93233 0.90191 0.89452 0.87338 0.85253 0.84350 0.88003 0.87568 0.83479 0.84660 0.92428 0.91149 0.91685 0.91342 0.96826 0.96825 0.79298 0.93897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.90 71.98 0.64 -0.81 16 2 C -0.10 -1.24 3.17 -9.90 -0.03 -1.28 16 3 H 0.09 1.16 7.85 -2.39 -0.02 1.14 16 4 C 0.10 0.86 6.42 86.53 0.56 1.41 16 5 N -0.62 -9.82 3.29 -810.05 -2.67 -12.49 16 6 C 0.52 8.44 7.73 87.66 0.68 9.12 16 7 O -0.59 -15.23 15.35 -3.03 -0.05 -15.28 16 8 C -0.12 -0.58 4.09 29.85 0.12 -0.46 16 9 C -0.10 -0.82 2.74 -9.75 -0.03 -0.85 16 10 H 0.10 1.10 7.87 -2.39 -0.02 1.08 16 11 C 0.06 0.72 6.78 72.52 0.49 1.22 16 12 O -0.37 -7.13 11.07 -50.14 -0.55 -7.68 16 13 C 0.48 8.26 8.57 71.43 0.61 8.88 16 14 O -0.51 -12.96 18.00 21.62 0.39 -12.57 16 15 C -0.16 -0.98 6.52 30.55 0.20 -0.78 16 16 C 0.11 2.39 5.93 86.62 0.51 2.91 16 17 C -0.08 -1.71 2.56 -9.70 -0.02 -1.73 16 18 H 0.08 1.71 7.86 -2.39 -0.02 1.69 16 19 C -0.10 -2.80 4.71 30.59 0.14 -2.66 16 20 C 0.15 5.87 6.15 86.38 0.53 6.40 16 21 N -0.75 -38.20 5.60 -343.43 -1.92 -40.12 16 22 C -0.25 -14.15 9.99 84.03 0.84 -13.31 16 23 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 24 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 25 N -0.97 -59.09 13.06 21.65 0.28 -58.80 16 26 Si 0.97 46.45 29.55 68.60 2.03 48.48 16 27 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 28 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 29 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 30 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.11 0.24 7.08 -2.39 -0.02 0.22 16 35 H 0.13 -0.03 7.93 -2.39 -0.02 -0.05 16 36 H 0.14 -0.12 7.91 -2.39 -0.02 -0.14 16 37 H 0.10 0.93 7.77 -2.39 -0.02 0.91 16 38 H 0.11 1.70 7.82 -2.39 -0.02 1.68 16 39 H 0.15 0.01 7.80 -2.39 -0.02 -0.01 16 40 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.06 1.62 7.83 -2.39 -0.02 1.60 16 42 H 0.07 1.64 7.95 -2.39 -0.02 1.62 16 43 H 0.06 1.85 8.00 -2.39 -0.02 1.83 16 44 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.01 0.56 7.68 -2.38 -0.02 0.54 16 47 H 0.38 20.06 7.67 -92.71 -0.71 19.34 16 48 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 Total: -1.00 -80.83 389.15 3.46 -77.37 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.24 Total: 16.93 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 5.71 Total: 4.17 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -4.31 Total: -111.42 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -0.21 Total: -35.53 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -80.83 3.46 -77.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104071144.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.505 kcal (2) G-P(sol) polarization free energy of solvation -80.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds