Wall clock time and date at job start Tue Mar 31 2020 14:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47128 * 2 1 4 4 N 1.46506 * 109.47176 * 239.99703 * 2 1 3 5 5 C 1.34773 * 119.99699 * 85.00160 * 4 2 1 6 6 O 1.21347 * 120.00131 * 0.02562 * 5 4 2 7 7 C 1.49450 * 119.99945 * 179.97438 * 5 4 2 8 8 O 1.21349 * 120.00024 * 6.75998 * 7 5 4 9 9 N 1.34780 * 120.00429 * 186.75901 * 7 5 4 10 10 C 1.46924 * 120.63340 * 179.08349 * 9 7 5 11 11 C 1.53194 * 108.77244 * 233.62928 * 10 9 7 12 12 C 1.53034 * 109.31600 * 305.36468 * 11 10 9 13 13 C 1.50699 * 109.46316 * 181.39070 * 12 11 10 14 14 H 1.07995 * 119.99571 * 354.45767 * 13 12 11 15 15 C 1.37876 * 120.00187 * 174.46732 * 13 12 11 16 16 N 1.31517 * 119.99961 * 1.05269 * 15 13 12 17 17 Si 1.86793 * 120.00128 * 181.05914 * 15 13 12 18 18 H 1.48508 * 109.47097 * 265.00478 * 17 15 13 19 19 H 1.48508 * 109.47035 * 24.99796 * 17 15 13 20 20 H 1.48498 * 109.47735 * 144.99923 * 17 15 13 21 21 C 1.53037 * 109.53863 * 61.36580 * 12 11 10 22 22 C 1.46931 * 120.62651 * 359.10614 * 9 7 5 23 23 C 1.53005 * 109.47068 * 119.99969 * 2 1 3 24 24 H 1.08996 * 110.45354 * 61.22772 * 23 2 1 25 25 C 1.54508 * 110.51100 * 183.83551 * 23 2 1 26 26 C 1.54478 * 104.06380 * 118.64424 * 25 23 2 27 27 O 1.44429 * 104.80099 * 23.97866 * 26 25 23 28 28 C 1.44424 * 105.27476 * 319.48562 * 27 26 25 29 29 H 1.08998 * 109.47094 * 305.18589 * 1 2 3 30 30 H 1.09001 * 109.46779 * 65.18388 * 1 2 3 31 31 H 1.09002 * 109.46845 * 185.17767 * 1 2 3 32 32 H 0.97001 * 120.00041 * 264.99624 * 4 2 1 33 33 H 1.09001 * 109.58562 * 113.84114 * 10 9 7 34 34 H 1.08997 * 109.58344 * 353.41451 * 10 9 7 35 35 H 1.09003 * 109.49249 * 185.41596 * 11 10 9 36 36 H 1.08999 * 109.52201 * 65.33477 * 11 10 9 37 37 H 1.09004 * 109.45855 * 301.36150 * 12 11 10 38 38 H 0.96996 * 119.99720 * 180.02562 * 16 15 13 39 39 H 1.08996 * 109.49859 * 58.58972 * 21 12 11 40 40 H 1.09003 * 109.50071 * 178.68872 * 21 12 11 41 41 H 1.09000 * 109.58051 * 246.16005 * 22 9 7 42 42 H 1.08999 * 109.58389 * 6.58106 * 22 9 7 43 43 H 1.09003 * 110.51017 * 237.28863 * 25 23 2 44 44 H 1.08999 * 110.51213 * 359.85949 * 25 23 2 45 45 H 1.08995 * 110.36938 * 142.80621 * 26 25 23 46 46 H 1.09000 * 110.36997 * 265.14799 * 26 25 23 47 47 H 1.09003 * 110.37452 * 281.68417 * 28 27 26 48 48 H 1.09003 * 110.37102 * 159.34555 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1471 -0.0184 -2.3571 6 8 1.8589 1.1592 -2.4115 7 6 2.6458 -0.7227 -3.5772 8 8 2.8181 -1.9238 -3.5566 9 7 2.9042 -0.0241 -4.7005 10 6 3.4140 -0.6995 -5.9016 11 6 4.6951 0.0058 -6.3576 12 6 4.4114 1.4975 -6.5480 13 6 5.6609 2.1889 -7.0294 14 1 6.5888 1.6407 -7.0986 15 6 5.6195 3.5213 -7.3814 16 7 4.4944 4.1943 -7.2774 17 14 7.1614 4.3706 -8.0063 18 1 7.8414 5.0553 -6.8774 19 1 8.0772 3.3619 -8.5972 20 1 6.7917 5.3697 -9.0408 21 6 3.9714 2.1090 -5.2158 22 6 2.6820 1.4276 -4.7469 23 6 2.0400 -0.7213 1.2493 24 1 1.7035 -1.7580 1.2546 25 6 3.5818 -0.6520 1.3229 26 6 3.8609 0.1129 2.6357 27 8 2.6813 -0.0961 3.4425 28 6 1.5700 0.0100 2.5263 29 1 -0.3633 0.5922 0.8399 30 1 -0.3633 0.4313 -0.9328 31 1 -0.3633 -1.0235 0.0927 32 1 2.2491 -1.6318 -1.1526 33 1 2.6671 -0.6489 -6.6939 34 1 3.6334 -1.7416 -5.6693 35 1 5.0308 -0.4240 -7.3013 36 1 5.4706 -0.1235 -5.6026 37 1 3.6188 1.6252 -7.2853 38 1 4.4652 5.1316 -7.5253 39 1 4.7533 1.9599 -4.4712 40 1 3.7919 3.1761 -5.3469 41 1 1.8755 1.6515 -5.4450 42 1 2.4185 1.7888 -3.7528 43 1 4.0074 -1.6545 1.3671 44 1 3.9808 -0.1061 0.4681 45 1 4.7392 -0.2971 3.1343 46 1 3.9992 1.1751 2.4338 47 1 1.3570 1.0565 2.3076 48 1 0.6884 -0.4789 2.9409 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117688285.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:38 Heat of formation + Delta-G solvation = -109.489266 kcal Electronic energy + Delta-G solvation = -28554.582535 eV Core-core repulsion = 24609.721563 eV Total energy + Delta-G solvation = -3944.860972 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.92299 -39.90782 -38.51464 -37.05271 -36.08622 -33.51819 -32.39522 -31.23130 -30.86414 -30.09528 -28.46366 -26.70445 -25.18494 -23.73060 -22.66305 -22.43177 -21.88309 -20.79331 -20.22452 -18.90162 -17.39938 -17.18771 -16.66322 -16.44377 -16.07731 -15.82965 -15.62416 -15.29621 -14.79170 -14.53423 -14.26603 -13.86914 -13.72596 -13.67074 -13.11963 -13.06631 -12.91449 -12.76778 -12.59180 -12.31945 -12.08055 -11.83756 -11.70741 -11.53706 -11.42083 -11.33061 -10.95570 -10.91481 -10.84480 -10.59979 -10.37989 -10.16329 -10.12339 -9.72992 -9.44551 -9.23441 -9.14520 -8.56716 -8.33121 -8.10382 -6.02304 -4.07495 1.57179 2.42929 3.28557 3.36033 3.37435 3.39371 3.56536 3.69066 4.14391 4.22565 4.41933 4.43581 4.54760 4.73854 4.83471 4.87860 5.01110 5.03964 5.28581 5.31295 5.34309 5.40651 5.42066 5.58255 5.61693 5.63860 5.71683 5.82411 5.87325 5.93469 6.05590 6.10433 6.21557 6.40617 6.43176 6.58793 6.71530 6.78481 6.95747 7.07982 7.13117 7.27304 7.65695 7.75953 7.86830 7.94611 8.02610 8.21622 8.40891 8.96460 9.57281 11.04805 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016509 B = 0.002856 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.687853 B = 9803.175968 C =10495.897698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.148 3.852 3 H 0.096 0.904 4 N -0.699 5.699 5 C 0.513 3.487 6 O -0.501 6.501 7 C 0.498 3.502 8 O -0.546 6.546 9 N -0.558 5.558 10 C 0.106 3.894 11 C -0.122 4.122 12 C 0.045 3.955 13 C -0.513 4.513 14 H 0.054 0.946 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.890 3.110 18 H -0.282 1.282 19 H -0.275 1.275 20 H -0.286 1.286 21 C -0.116 4.116 22 C 0.044 3.956 23 C -0.131 4.131 24 H 0.092 0.908 25 C -0.154 4.154 26 C 0.044 3.956 27 O -0.376 6.376 28 C 0.055 3.945 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.411 0.589 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.031 0.969 38 H 0.260 0.740 39 H 0.036 0.964 40 H 0.096 0.904 41 H 0.060 0.940 42 H 0.141 0.859 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.062 0.938 47 H 0.066 0.934 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.384 -9.331 17.357 21.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.044 3.956 3 H 0.114 0.886 4 N -0.353 5.353 5 C 0.296 3.704 6 O -0.377 6.377 7 C 0.280 3.720 8 O -0.426 6.426 9 N -0.289 5.289 10 C -0.016 4.016 11 C -0.160 4.160 12 C 0.027 3.973 13 C -0.552 4.552 14 H 0.072 0.928 15 C -0.140 4.140 16 N -0.528 5.528 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.199 1.199 20 H -0.212 1.212 21 C -0.155 4.155 22 C -0.076 4.076 23 C -0.150 4.150 24 H 0.110 0.890 25 C -0.192 4.192 26 C -0.033 4.033 27 O -0.294 6.294 28 C -0.022 4.022 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.247 0.753 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.114 0.886 41 H 0.078 0.922 42 H 0.158 0.842 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.111 0.889 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.580 -8.947 17.492 21.059 hybrid contribution 0.997 0.197 -0.808 1.298 sum -6.583 -8.750 16.684 19.956 Atomic orbital electron populations 1.22235 0.94499 1.02530 1.03246 1.21095 0.94534 0.97442 0.82566 0.88618 1.45857 1.65909 1.14858 1.08649 1.20435 0.78399 0.86837 0.84755 1.90389 1.48731 1.15415 1.83189 1.19839 0.80553 0.87080 0.84549 1.90696 1.53990 1.13989 1.83940 1.48248 1.59323 1.10543 1.10761 1.21906 0.97283 0.96965 0.85429 1.22015 0.94550 0.99405 1.00057 1.18695 0.96992 0.88359 0.93300 1.21177 0.95359 0.95173 1.43460 0.92771 1.24969 0.95944 0.97514 0.95545 1.69895 1.25333 1.09237 1.48369 0.86619 0.83535 0.79422 0.78647 1.20814 1.19945 1.21231 1.21933 0.93027 1.02454 0.98046 1.23517 1.00215 0.76705 1.07142 1.22870 0.96111 1.01283 0.94722 0.88981 1.23048 0.94944 1.02244 0.98958 1.23448 0.89316 0.99712 0.90800 1.89137 1.15340 1.93086 1.31853 1.23421 0.90709 1.00006 0.88096 0.91201 0.91440 0.92081 0.75250 0.91485 0.90122 0.91807 0.92971 0.95085 0.92995 0.94521 0.88617 0.92168 0.84242 0.90234 0.89853 0.88945 0.91954 0.91627 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 9.18 37.16 0.34 -0.96 16 2 C 0.15 1.29 1.82 -67.92 -0.12 1.16 16 3 H 0.10 0.97 7.58 -51.93 -0.39 0.58 16 4 N -0.70 -7.54 4.68 -54.23 -0.25 -7.79 16 5 C 0.51 7.51 7.77 -11.59 -0.09 7.42 16 6 O -0.50 -8.23 12.68 5.50 0.07 -8.16 16 7 C 0.50 8.46 7.76 -11.58 -0.09 8.37 16 8 O -0.55 -9.76 15.91 5.50 0.09 -9.67 16 9 N -0.56 -10.22 2.97 -173.27 -0.52 -10.74 16 10 C 0.11 1.91 6.43 -3.71 -0.02 1.88 16 11 C -0.12 -2.48 5.30 -26.61 -0.14 -2.62 16 12 C 0.05 1.08 1.97 -91.74 -0.18 0.90 16 13 C -0.51 -13.79 8.49 -34.44 -0.29 -14.08 16 14 H 0.05 1.45 7.75 -52.49 -0.41 1.04 16 15 C 0.06 1.68 5.33 -17.82 -0.09 1.58 16 16 N -0.89 -24.90 11.68 55.43 0.65 -24.25 16 17 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 21 C -0.12 -2.66 5.20 -26.61 -0.14 -2.80 16 22 C 0.04 0.86 6.21 -3.71 -0.02 0.84 16 23 C -0.13 -0.92 2.75 -89.05 -0.25 -1.17 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 25 C -0.15 -1.18 6.52 -25.16 -0.16 -1.35 16 26 C 0.04 0.35 7.63 37.93 0.29 0.64 16 27 O -0.38 -3.57 11.65 -35.23 -0.41 -3.98 16 28 C 0.06 0.39 6.23 37.93 0.24 0.63 16 29 H 0.07 0.43 7.39 -51.93 -0.38 0.05 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.41 4.01 8.09 -40.82 -0.33 3.68 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.39 7.01 -51.93 -0.36 1.02 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 2.45 6.45 -51.93 -0.33 2.11 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.14 2.67 3.81 -56.92 -0.22 2.45 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.73 7.59 -51.93 -0.39 0.34 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.44 7.71 -51.93 -0.40 0.04 16 48 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -30.12 376.57 -8.32 -38.44 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.86 Total: 4.03 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -0.74 Total: 0.45 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: -0.12 Total: -42.78 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.25 Total: -21.82 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.12 -8.32 -38.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117688285.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.052 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds