Wall clock time and date at job start Tue Mar 31 2020 14:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47128 * 2 1 4 4 N 1.46506 * 109.47176 * 239.99703 * 2 1 3 5 5 C 1.34773 * 119.99699 * 85.00160 * 4 2 1 6 6 O 1.21347 * 120.00131 * 0.02562 * 5 4 2 7 7 C 1.49450 * 119.99945 * 179.97438 * 5 4 2 8 8 O 1.21349 * 120.00024 * 6.75998 * 7 5 4 9 9 N 1.34780 * 120.00429 * 186.75901 * 7 5 4 10 10 C 1.46924 * 120.63340 * 179.08349 * 9 7 5 11 11 C 1.53194 * 108.77244 * 233.62928 * 10 9 7 12 12 C 1.53034 * 109.31600 * 305.36468 * 11 10 9 13 13 C 1.50699 * 109.46316 * 181.39070 * 12 11 10 14 14 H 1.07995 * 119.99571 * 354.45767 * 13 12 11 15 15 C 1.37876 * 120.00187 * 174.46732 * 13 12 11 16 16 N 1.31517 * 119.99961 * 1.05269 * 15 13 12 17 17 Si 1.86793 * 120.00128 * 181.05914 * 15 13 12 18 18 H 1.48508 * 109.47097 * 265.00478 * 17 15 13 19 19 H 1.48508 * 109.47035 * 24.99796 * 17 15 13 20 20 H 1.48498 * 109.47735 * 144.99923 * 17 15 13 21 21 C 1.53037 * 109.53863 * 61.36580 * 12 11 10 22 22 C 1.46931 * 120.62651 * 359.10614 * 9 7 5 23 23 C 1.53005 * 109.47068 * 119.99969 * 2 1 3 24 24 H 1.08996 * 110.45354 * 61.22772 * 23 2 1 25 25 C 1.54508 * 110.51100 * 183.83551 * 23 2 1 26 26 C 1.54478 * 104.06380 * 118.64424 * 25 23 2 27 27 O 1.44429 * 104.80099 * 23.97866 * 26 25 23 28 28 C 1.44424 * 105.27476 * 319.48562 * 27 26 25 29 29 H 1.08998 * 109.47094 * 305.18589 * 1 2 3 30 30 H 1.09001 * 109.46779 * 65.18388 * 1 2 3 31 31 H 1.09002 * 109.46845 * 185.17767 * 1 2 3 32 32 H 0.97001 * 120.00041 * 264.99624 * 4 2 1 33 33 H 1.09001 * 109.58562 * 113.84114 * 10 9 7 34 34 H 1.08997 * 109.58344 * 353.41451 * 10 9 7 35 35 H 1.09003 * 109.49249 * 185.41596 * 11 10 9 36 36 H 1.08999 * 109.52201 * 65.33477 * 11 10 9 37 37 H 1.09004 * 109.45855 * 301.36150 * 12 11 10 38 38 H 0.96996 * 119.99720 * 180.02562 * 16 15 13 39 39 H 1.08996 * 109.49859 * 58.58972 * 21 12 11 40 40 H 1.09003 * 109.50071 * 178.68872 * 21 12 11 41 41 H 1.09000 * 109.58051 * 246.16005 * 22 9 7 42 42 H 1.08999 * 109.58389 * 6.58106 * 22 9 7 43 43 H 1.09003 * 110.51017 * 237.28863 * 25 23 2 44 44 H 1.08999 * 110.51213 * 359.85949 * 25 23 2 45 45 H 1.08995 * 110.36938 * 142.80621 * 26 25 23 46 46 H 1.09000 * 110.36997 * 265.14799 * 26 25 23 47 47 H 1.09003 * 110.37452 * 281.68417 * 28 27 26 48 48 H 1.09003 * 110.37102 * 159.34555 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1471 -0.0184 -2.3571 6 8 1.8589 1.1592 -2.4115 7 6 2.6458 -0.7227 -3.5772 8 8 2.8181 -1.9238 -3.5566 9 7 2.9042 -0.0241 -4.7005 10 6 3.4140 -0.6995 -5.9016 11 6 4.6951 0.0058 -6.3576 12 6 4.4114 1.4975 -6.5480 13 6 5.6609 2.1889 -7.0294 14 1 6.5888 1.6407 -7.0986 15 6 5.6195 3.5213 -7.3814 16 7 4.4944 4.1943 -7.2774 17 14 7.1614 4.3706 -8.0063 18 1 7.8414 5.0553 -6.8774 19 1 8.0772 3.3619 -8.5972 20 1 6.7917 5.3697 -9.0408 21 6 3.9714 2.1090 -5.2158 22 6 2.6820 1.4276 -4.7469 23 6 2.0400 -0.7213 1.2493 24 1 1.7035 -1.7580 1.2546 25 6 3.5818 -0.6520 1.3229 26 6 3.8609 0.1129 2.6357 27 8 2.6813 -0.0961 3.4425 28 6 1.5700 0.0100 2.5263 29 1 -0.3633 0.5922 0.8399 30 1 -0.3633 0.4313 -0.9328 31 1 -0.3633 -1.0235 0.0927 32 1 2.2491 -1.6318 -1.1526 33 1 2.6671 -0.6489 -6.6939 34 1 3.6334 -1.7416 -5.6693 35 1 5.0308 -0.4240 -7.3013 36 1 5.4706 -0.1235 -5.6026 37 1 3.6188 1.6252 -7.2853 38 1 4.4652 5.1316 -7.5253 39 1 4.7533 1.9599 -4.4712 40 1 3.7919 3.1761 -5.3469 41 1 1.8755 1.6515 -5.4450 42 1 2.4185 1.7888 -3.7528 43 1 4.0074 -1.6545 1.3671 44 1 3.9808 -0.1061 0.4681 45 1 4.7392 -0.2971 3.1343 46 1 3.9992 1.1751 2.4338 47 1 1.3570 1.0565 2.3076 48 1 0.6884 -0.4789 2.9409 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117688285.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:37 Heat of formation + Delta-G solvation = -129.173327 kcal Electronic energy + Delta-G solvation = -28555.436100 eV Core-core repulsion = 24609.721563 eV Total energy + Delta-G solvation = -3945.714537 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.11839 -40.73663 -39.71155 -38.59370 -37.05134 -35.31488 -33.31576 -32.99735 -31.77953 -31.51603 -29.09906 -28.37322 -26.51703 -24.86391 -24.15426 -23.53745 -22.99242 -21.70968 -21.43142 -20.40251 -18.73581 -18.39359 -18.18764 -17.53263 -17.15439 -16.82391 -16.74695 -16.48371 -16.11869 -15.78170 -15.47276 -15.27699 -14.79184 -14.65607 -14.58525 -14.39653 -14.35061 -13.97062 -13.68163 -13.41971 -13.23591 -13.22670 -12.82611 -12.68542 -12.53774 -12.41484 -12.30322 -12.19291 -12.15784 -11.96106 -11.94302 -11.51396 -11.47827 -11.06417 -10.98039 -10.77795 -10.49136 -10.40574 -9.93130 -9.70181 -8.09564 -6.21864 0.30687 1.26454 1.40502 1.42282 1.52007 2.09437 2.43243 2.45108 2.98242 3.18955 3.23346 3.55249 3.58951 3.89858 4.10128 4.15132 4.20706 4.23639 4.26978 4.31569 4.39991 4.43160 4.48294 4.54826 4.62644 4.77589 4.78280 4.83204 4.85483 4.88227 4.93178 4.97119 5.04420 5.12223 5.15442 5.18973 5.29549 5.36229 5.37741 5.52226 5.62340 5.81433 5.95028 6.00534 6.07117 6.28374 6.37073 6.69346 6.88959 6.92465 7.45870 8.96095 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016509 B = 0.002856 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.687853 B = 9803.175968 C =10495.897698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 H 0.082 0.918 4 N -0.678 5.678 5 C 0.515 3.485 6 O -0.522 6.522 7 C 0.499 3.501 8 O -0.551 6.551 9 N -0.567 5.567 10 C 0.111 3.889 11 C -0.113 4.113 12 C 0.042 3.958 13 C -0.533 4.533 14 H 0.050 0.950 15 C 0.014 3.986 16 N -0.915 5.915 17 Si 0.951 3.049 18 H -0.278 1.278 19 H -0.269 1.269 20 H -0.283 1.283 21 C -0.106 4.106 22 C 0.060 3.940 23 C -0.121 4.121 24 H 0.109 0.891 25 C -0.154 4.154 26 C 0.041 3.959 27 O -0.395 6.395 28 C 0.053 3.947 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.419 0.581 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.004 0.996 38 H 0.261 0.739 39 H 0.026 0.974 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.150 0.850 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.646 -10.669 18.715 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 H 0.100 0.900 4 N -0.331 5.331 5 C 0.297 3.703 6 O -0.401 6.401 7 C 0.282 3.718 8 O -0.431 6.431 9 N -0.299 5.299 10 C -0.011 4.011 11 C -0.151 4.151 12 C 0.024 3.976 13 C -0.571 4.571 14 H 0.068 0.932 15 C -0.185 4.185 16 N -0.554 5.554 17 Si 0.777 3.223 18 H -0.204 1.204 19 H -0.194 1.194 20 H -0.209 1.209 21 C -0.144 4.144 22 C -0.061 4.061 23 C -0.140 4.140 24 H 0.127 0.873 25 C -0.192 4.192 26 C -0.036 4.036 27 O -0.314 6.314 28 C -0.024 4.024 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.257 0.743 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.022 0.978 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.166 0.834 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.119 0.881 46 H 0.078 0.922 47 H 0.086 0.914 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.843 -10.330 18.883 22.909 hybrid contribution 1.075 0.568 -1.172 1.689 sum -6.768 -9.762 17.711 21.326 Atomic orbital electron populations 1.22214 0.93287 1.03694 1.02939 1.21249 0.95387 0.96765 0.82174 0.90017 1.45821 1.64147 1.15087 1.08014 1.20029 0.78742 0.86520 0.85023 1.90353 1.50210 1.16174 1.83336 1.20218 0.79801 0.87031 0.84761 1.90687 1.54043 1.14260 1.84113 1.48218 1.60188 1.09940 1.11526 1.21844 0.96259 0.97159 0.85807 1.21855 0.95765 0.97061 1.00406 1.18657 0.95171 0.90861 0.92948 1.21541 0.96195 0.95730 1.43676 0.93152 1.25704 0.98701 0.98240 0.95838 1.70019 1.27022 1.09396 1.48997 0.85657 0.80198 0.78364 0.78105 1.20440 1.19358 1.20904 1.21701 0.94489 1.00941 0.97304 1.23283 0.97934 0.77428 1.07406 1.22817 0.95573 1.01928 0.93670 0.87314 1.23042 0.95446 1.02451 0.98287 1.23521 0.89403 0.99768 0.90890 1.89120 1.16228 1.93179 1.32917 1.23565 0.90726 1.00454 0.87697 0.89246 0.93616 0.90592 0.74304 0.90571 0.88701 0.91057 0.93568 0.97755 0.93015 0.95493 0.91666 0.92567 0.83357 0.89402 0.91174 0.88073 0.92165 0.91409 0.86789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.18 71.98 0.66 -1.51 16 2 C 0.15 2.30 1.82 44.99 0.08 2.38 16 3 H 0.08 1.57 7.58 -2.39 -0.02 1.55 16 4 N -0.68 -13.40 4.68 -443.86 -2.08 -15.48 16 5 C 0.52 14.51 7.77 87.27 0.68 15.19 16 6 O -0.52 -16.90 12.68 -3.24 -0.04 -16.94 16 7 C 0.50 16.33 7.76 87.27 0.68 17.01 16 8 O -0.55 -18.63 15.91 -3.24 -0.05 -18.68 16 9 N -0.57 -20.45 2.97 -820.47 -2.44 -22.89 16 10 C 0.11 3.89 6.43 86.36 0.56 4.44 16 11 C -0.11 -4.57 5.30 30.67 0.16 -4.41 16 12 C 0.04 2.08 1.97 -11.52 -0.02 2.06 16 13 C -0.53 -29.13 8.49 25.60 0.22 -28.92 16 14 H 0.05 2.72 7.75 -2.91 -0.02 2.70 16 15 C 0.01 0.77 5.33 84.65 0.45 1.23 16 16 N -0.91 -52.38 11.68 21.45 0.25 -52.13 16 17 Si 0.95 43.47 29.54 68.60 2.03 45.50 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 C -0.11 -4.97 5.20 30.67 0.16 -4.81 16 22 C 0.06 2.37 6.21 86.36 0.54 2.90 16 23 C -0.12 -1.41 2.75 -9.78 -0.03 -1.44 16 24 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 25 C -0.15 -2.11 6.52 31.61 0.21 -1.90 16 26 C 0.04 0.59 7.63 72.48 0.55 1.14 16 27 O -0.40 -6.81 11.65 -148.98 -1.74 -8.55 16 28 C 0.05 0.62 6.23 72.48 0.45 1.07 16 29 H 0.09 0.85 7.39 -2.39 -0.02 0.84 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.42 7.16 8.09 -92.71 -0.75 6.41 16 33 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.09 3.08 7.01 -2.39 -0.02 3.07 16 35 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 37 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 39 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 3.47 6.45 -2.39 -0.02 3.45 16 41 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.15 5.72 3.81 -81.35 -0.31 5.41 16 43 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.07 1.15 7.59 -2.39 -0.02 1.14 16 45 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.07 0.77 7.71 -2.39 -0.02 0.75 16 48 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -64.85 376.57 1.19 -63.67 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -0.09 Total: 21.06 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 5.34 Total: 4.44 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -4.26 Total: -90.49 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -1.83 Total: -44.17 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -64.85 1.19 -63.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117688285.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.508 kcal (2) G-P(sol) polarization free energy of solvation -64.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds