Wall clock time and date at job start Tue Mar 31 2020 14:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 120.00553 * 2 1 4 4 N 1.46494 * 109.46800 * 117.15955 * 3 2 1 5 5 C 1.36736 * 127.13565 * 95.27764 * 4 3 2 6 6 C 1.50705 * 126.34808 * 0.02562 * 5 4 3 7 7 C 1.52992 * 109.47296 * 90.00115 * 6 5 4 8 8 H 1.09001 * 109.47069 * 304.99854 * 7 6 5 9 9 C 1.53005 * 109.47171 * 185.00119 * 7 6 5 10 10 S 1.81396 * 109.47109 * 65.00152 * 7 6 5 11 11 C 1.81402 * 102.99939 * 184.99990 * 10 7 6 12 12 N 1.30292 * 107.31142 * 179.97438 * 5 4 3 13 13 N 1.28534 * 110.05018 * 359.97438 * 12 5 4 14 14 C 1.31222 * 109.85619 * 359.74586 * 13 12 5 15 15 N 1.38587 * 126.46990 * 180.25452 * 14 13 12 16 16 C 1.46895 * 111.00005 * 293.94343 * 15 14 13 17 17 C 1.46897 * 110.99709 * 57.89767 * 15 14 13 18 18 H 1.08999 * 109.47202 * 299.99580 * 17 15 14 19 19 C 1.52998 * 109.47404 * 59.99748 * 17 15 14 20 20 C 1.50700 * 109.47047 * 179.97438 * 17 15 14 21 21 H 1.08004 * 120.00125 * 0.02562 * 20 17 15 22 22 C 1.37877 * 120.00361 * 179.97438 * 20 17 15 23 23 N 1.31515 * 119.99866 * 0.02562 * 22 20 17 24 24 Si 1.86802 * 120.00334 * 179.97438 * 22 20 17 25 25 H 1.48501 * 109.47010 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46751 * 119.99844 * 24 22 20 27 27 H 1.48499 * 109.47218 * 240.00327 * 24 22 20 28 28 H 1.07996 * 120.00363 * 179.97438 * 1 2 3 29 29 H 1.08000 * 119.99318 * 359.72009 * 1 2 3 30 30 H 1.08001 * 119.99794 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47439 * 237.16234 * 3 2 1 32 32 H 1.09007 * 109.46678 * 357.16446 * 3 2 1 33 33 H 1.09003 * 109.47243 * 210.00720 * 6 5 4 34 34 H 1.09005 * 109.46825 * 329.99725 * 6 5 4 35 35 H 1.09003 * 109.46837 * 60.00236 * 9 7 6 36 36 H 1.08997 * 109.46781 * 179.97438 * 9 7 6 37 37 H 1.08996 * 109.47551 * 300.00133 * 9 7 6 38 38 H 1.09004 * 109.47313 * 180.02562 * 11 10 7 39 39 H 1.09001 * 109.47326 * 299.99581 * 11 10 7 40 40 H 1.08997 * 109.47233 * 60.00063 * 11 10 7 41 41 H 1.09000 * 109.47503 * 67.72807 * 16 15 14 42 42 H 1.09001 * 109.46684 * 187.72627 * 16 15 14 43 43 H 1.08997 * 109.47165 * 307.72097 * 16 15 14 44 44 H 1.09002 * 109.47365 * 299.99959 * 19 17 15 45 45 H 1.08999 * 109.47079 * 59.99756 * 19 17 15 46 46 H 1.09004 * 109.47316 * 179.97438 * 19 17 15 47 47 H 0.96999 * 120.00285 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.8538 1.4126 1.2289 5 6 4.1694 1.0797 1.3962 6 6 5.0921 0.5272 0.3405 7 6 5.7902 1.6814 -0.3815 8 1 5.0419 2.3693 -0.7752 9 6 6.6308 1.1282 -1.5341 10 16 6.8665 2.5610 0.7840 11 6 7.4747 3.9596 -0.1982 12 7 4.4778 1.3297 2.6371 13 7 3.4545 1.7948 3.2604 14 6 2.4315 1.8721 2.4423 15 7 1.1610 2.3304 2.7530 16 6 0.4989 1.4364 3.7123 17 6 1.2081 3.7073 3.2625 18 1 1.8215 3.7408 4.1628 19 6 1.8138 4.6246 2.1982 20 6 -0.1885 4.1705 3.5882 21 1 -1.0272 3.5080 3.4326 22 6 -0.3957 5.4396 4.0857 23 7 0.6256 6.2462 4.2756 24 14 -2.1269 6.0139 4.4887 25 1 -3.0920 4.9262 4.1871 26 1 -2.2097 6.3629 5.9297 27 1 -2.4552 7.2086 3.6702 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5399 0.9354 0.0046 30 1 1.8500 -0.9353 -0.0004 31 1 2.7279 1.3411 -0.8634 32 1 1.3564 2.1330 -0.0508 33 1 5.8393 -0.1128 0.8098 34 1 4.5150 -0.0549 -0.3780 35 1 5.9839 0.5997 -2.2344 36 1 7.1277 1.9505 -2.0487 37 1 7.3790 0.4402 -1.1405 38 1 8.1432 4.5680 0.4110 39 1 8.0158 3.5853 -1.0673 40 1 6.6312 4.5657 -0.5286 41 1 1.0091 1.4932 4.6738 42 1 -0.5408 1.7403 3.8341 43 1 0.5370 0.4124 3.3407 44 1 2.8239 4.2898 1.9622 45 1 1.2004 4.5911 1.2979 46 1 1.8483 5.6464 2.5761 47 1 0.4799 7.1391 4.6252 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121656890.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:23 Heat of formation + Delta-G solvation = 108.619008 kcal Electronic energy + Delta-G solvation = -26617.950260 eV Core-core repulsion = 23157.592794 eV Total energy + Delta-G solvation = -3460.357465 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.41329 -37.03488 -36.05079 -35.24862 -32.87186 -32.38836 -30.34422 -29.28506 -28.71158 -27.02644 -26.41602 -25.33737 -24.26575 -22.48699 -21.67320 -20.77887 -19.79654 -19.38095 -16.91449 -16.55051 -16.16731 -15.90232 -15.34633 -15.23752 -14.94835 -14.56721 -14.41325 -13.93341 -13.73338 -13.54014 -13.40484 -13.05694 -12.88770 -12.56171 -12.40380 -12.25132 -12.10801 -11.76453 -11.62664 -11.50441 -11.39186 -11.12994 -11.01090 -10.88878 -10.75441 -10.30625 -10.23676 -10.08650 -9.91389 -9.76558 -9.67668 -9.54382 -9.04002 -8.50418 -8.33218 -7.64871 -7.52237 -6.05486 -4.12006 1.66442 1.96958 2.27783 2.58630 2.97254 3.27272 3.35253 3.38172 3.47554 4.31785 4.35973 4.56028 4.67541 4.76331 4.81709 4.93949 4.94924 5.06627 5.08125 5.12869 5.15643 5.26967 5.36087 5.42680 5.59889 5.61538 5.70553 5.78294 5.83816 5.84466 6.06335 6.23753 6.39453 6.47457 6.48136 6.64785 6.68438 6.80093 6.94218 6.99665 7.22059 7.44507 7.69887 7.78492 7.95955 8.21590 8.50933 8.92094 9.38927 9.52839 11.01416 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.013798 B = 0.004095 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.779872 B = 6835.956093 C = 7961.502848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.186 4.186 3 C 0.144 3.856 4 N -0.465 5.465 5 C 0.150 3.850 6 C -0.004 4.004 7 C -0.062 4.062 8 H 0.084 0.916 9 C -0.145 4.145 10 S -0.214 6.214 11 C -0.134 4.134 12 N -0.267 5.267 13 N -0.320 5.320 14 C 0.387 3.613 15 N -0.471 5.471 16 C 0.054 3.946 17 C 0.225 3.775 18 H 0.021 0.979 19 C -0.128 4.128 20 C -0.510 4.510 21 H 0.066 0.934 22 C 0.062 3.938 23 N -0.887 5.887 24 Si 0.899 3.101 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.034 0.966 42 H 0.086 0.914 43 H 0.041 0.959 44 H 0.003 0.997 45 H 0.028 0.972 46 H 0.091 0.909 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.340 -11.241 -14.902 20.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.205 4.205 3 C 0.021 3.979 4 N -0.159 5.159 5 C -0.117 4.117 6 C -0.045 4.045 7 C -0.192 4.192 8 H 0.103 0.897 9 C -0.204 4.204 10 S 0.011 5.989 11 C -0.303 4.303 12 N -0.107 5.107 13 N -0.163 5.163 14 C 0.031 3.969 15 N -0.198 5.198 16 C -0.094 4.094 17 C 0.121 3.879 18 H 0.039 0.961 19 C -0.187 4.187 20 C -0.548 4.548 21 H 0.084 0.916 22 C -0.140 4.140 23 N -0.526 5.526 24 Si 0.727 3.273 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.211 1.211 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.105 0.895 43 H 0.060 0.940 44 H 0.022 0.978 45 H 0.048 0.952 46 H 0.109 0.891 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.141 -11.153 -12.924 18.913 hybrid contribution -1.573 0.783 -1.617 2.388 sum 6.568 -10.371 -14.541 19.030 Atomic orbital electron populations 1.24023 0.95688 1.02613 0.96005 1.22956 0.96432 0.97463 1.03681 1.20795 0.95019 0.97762 0.84352 1.46342 1.09910 1.48868 1.10783 1.24212 0.83502 1.06985 0.97045 1.19689 0.95672 0.95664 0.93441 1.23149 0.99193 0.99497 0.97383 0.89739 1.22083 0.99969 1.01638 0.96747 1.87604 1.58932 1.30476 1.21852 1.23444 1.04071 0.99788 1.02953 1.73975 1.20834 1.13903 1.02013 1.74735 0.96595 1.19404 1.25553 1.22792 0.93987 0.97593 0.82508 1.59221 1.08618 1.06079 1.45906 1.22145 1.00404 0.93531 0.93284 1.19406 0.97348 0.78396 0.92753 0.96092 1.21782 0.95106 1.03588 0.98201 1.21090 0.91772 0.99077 1.42887 0.91582 1.24914 0.97138 0.96516 0.95415 1.69916 1.29751 1.07927 1.44959 0.86426 0.84245 0.78648 0.77987 1.19697 1.21002 1.21053 0.88175 0.87405 0.87372 0.89254 0.87726 0.87832 0.89094 0.91671 0.92258 0.90960 0.88218 0.90911 0.90783 0.94736 0.89523 0.93986 0.97764 0.95239 0.89090 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 14.32 29.01 0.42 -1.15 16 2 C -0.19 -2.10 9.85 -36.02 -0.35 -2.45 16 3 C 0.14 1.85 6.40 -5.20 -0.03 1.82 16 4 N -0.47 -7.87 2.79 -115.36 -0.32 -8.19 16 5 C 0.15 2.47 6.75 -154.02 -1.04 1.43 16 6 C 0.00 -0.04 4.85 -27.88 -0.14 -0.18 16 7 C -0.06 -0.66 2.81 -26.73 -0.08 -0.74 16 8 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 9 C -0.15 -1.07 9.10 37.16 0.34 -0.74 16 10 S -0.21 -2.95 21.01 -107.50 -2.26 -5.21 16 11 C -0.13 -1.39 10.45 101.05 1.06 -0.33 16 12 N -0.27 -5.55 11.94 32.99 0.39 -5.15 16 13 N -0.32 -7.44 12.10 30.32 0.37 -7.07 16 14 C 0.39 8.14 5.03 -318.87 -1.60 6.53 16 15 N -0.47 -10.28 4.66 -176.09 -0.82 -11.10 16 16 C 0.05 1.09 9.12 60.06 0.55 1.64 16 17 C 0.23 5.79 1.99 -68.87 -0.14 5.65 16 18 H 0.02 0.63 8.06 -51.93 -0.42 0.21 16 19 C -0.13 -3.25 8.84 37.16 0.33 -2.92 16 20 C -0.51 -13.56 7.97 -34.44 -0.27 -13.83 16 21 H 0.07 1.71 6.40 -52.48 -0.34 1.37 16 22 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 23 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 24 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H 0.10 0.91 8.06 -52.49 -0.42 0.48 16 29 H 0.11 1.25 7.84 -52.49 -0.41 0.84 16 30 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.09 0.88 7.62 -51.93 -0.40 0.49 16 32 H 0.10 1.49 7.79 -51.92 -0.40 1.09 16 33 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.09 0.76 7.77 -51.93 -0.40 0.36 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.42 6.92 -51.93 -0.36 0.06 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 39 H 0.07 0.60 7.14 -51.92 -0.37 0.23 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.09 1.72 6.38 -51.93 -0.33 1.39 16 43 H 0.04 0.75 8.08 -51.93 -0.42 0.33 16 44 H 0.00 0.09 7.22 -51.93 -0.38 -0.29 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 47 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 394.31 15.07 5.94 5.94 Total: -1.00 -32.37 394.31 -10.06 -42.43 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.90 Total: 0.86 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -1.06 Total: -3.67 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.25 Total: -56.17 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -2.95 SS G_CDS: -2.26 Total: -5.21 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.37 -10.06 -42.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121656890.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.046 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds