Wall clock time and date at job start Tue Mar 31 2020 14:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 120.00553 * 2 1 4 4 N 1.46494 * 109.46800 * 117.15955 * 3 2 1 5 5 C 1.36736 * 127.13565 * 95.27764 * 4 3 2 6 6 C 1.50705 * 126.34808 * 0.02562 * 5 4 3 7 7 C 1.52992 * 109.47296 * 90.00115 * 6 5 4 8 8 H 1.09001 * 109.47069 * 304.99854 * 7 6 5 9 9 C 1.53005 * 109.47171 * 185.00119 * 7 6 5 10 10 S 1.81396 * 109.47109 * 65.00152 * 7 6 5 11 11 C 1.81402 * 102.99939 * 184.99990 * 10 7 6 12 12 N 1.30292 * 107.31142 * 179.97438 * 5 4 3 13 13 N 1.28534 * 110.05018 * 359.97438 * 12 5 4 14 14 C 1.31222 * 109.85619 * 359.74586 * 13 12 5 15 15 N 1.38587 * 126.46990 * 180.25452 * 14 13 12 16 16 C 1.46895 * 111.00005 * 293.94343 * 15 14 13 17 17 C 1.46897 * 110.99709 * 57.89767 * 15 14 13 18 18 H 1.08999 * 109.47202 * 299.99580 * 17 15 14 19 19 C 1.52998 * 109.47404 * 59.99748 * 17 15 14 20 20 C 1.50700 * 109.47047 * 179.97438 * 17 15 14 21 21 H 1.08004 * 120.00125 * 0.02562 * 20 17 15 22 22 C 1.37877 * 120.00361 * 179.97438 * 20 17 15 23 23 N 1.31515 * 119.99866 * 0.02562 * 22 20 17 24 24 Si 1.86802 * 120.00334 * 179.97438 * 22 20 17 25 25 H 1.48501 * 109.47010 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46751 * 119.99844 * 24 22 20 27 27 H 1.48499 * 109.47218 * 240.00327 * 24 22 20 28 28 H 1.07996 * 120.00363 * 179.97438 * 1 2 3 29 29 H 1.08000 * 119.99318 * 359.72009 * 1 2 3 30 30 H 1.08001 * 119.99794 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47439 * 237.16234 * 3 2 1 32 32 H 1.09007 * 109.46678 * 357.16446 * 3 2 1 33 33 H 1.09003 * 109.47243 * 210.00720 * 6 5 4 34 34 H 1.09005 * 109.46825 * 329.99725 * 6 5 4 35 35 H 1.09003 * 109.46837 * 60.00236 * 9 7 6 36 36 H 1.08997 * 109.46781 * 179.97438 * 9 7 6 37 37 H 1.08996 * 109.47551 * 300.00133 * 9 7 6 38 38 H 1.09004 * 109.47313 * 180.02562 * 11 10 7 39 39 H 1.09001 * 109.47326 * 299.99581 * 11 10 7 40 40 H 1.08997 * 109.47233 * 60.00063 * 11 10 7 41 41 H 1.09000 * 109.47503 * 67.72807 * 16 15 14 42 42 H 1.09001 * 109.46684 * 187.72627 * 16 15 14 43 43 H 1.08997 * 109.47165 * 307.72097 * 16 15 14 44 44 H 1.09002 * 109.47365 * 299.99959 * 19 17 15 45 45 H 1.08999 * 109.47079 * 59.99756 * 19 17 15 46 46 H 1.09004 * 109.47316 * 179.97438 * 19 17 15 47 47 H 0.96999 * 120.00285 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.8538 1.4126 1.2289 5 6 4.1694 1.0797 1.3962 6 6 5.0921 0.5272 0.3405 7 6 5.7902 1.6814 -0.3815 8 1 5.0419 2.3693 -0.7752 9 6 6.6308 1.1282 -1.5341 10 16 6.8665 2.5610 0.7840 11 6 7.4747 3.9596 -0.1982 12 7 4.4778 1.3297 2.6371 13 7 3.4545 1.7948 3.2604 14 6 2.4315 1.8721 2.4423 15 7 1.1610 2.3304 2.7530 16 6 0.4989 1.4364 3.7123 17 6 1.2081 3.7073 3.2625 18 1 1.8215 3.7408 4.1628 19 6 1.8138 4.6246 2.1982 20 6 -0.1885 4.1705 3.5882 21 1 -1.0272 3.5080 3.4326 22 6 -0.3957 5.4396 4.0857 23 7 0.6256 6.2462 4.2756 24 14 -2.1269 6.0139 4.4887 25 1 -3.0920 4.9262 4.1871 26 1 -2.2097 6.3629 5.9297 27 1 -2.4552 7.2086 3.6702 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5399 0.9354 0.0046 30 1 1.8500 -0.9353 -0.0004 31 1 2.7279 1.3411 -0.8634 32 1 1.3564 2.1330 -0.0508 33 1 5.8393 -0.1128 0.8098 34 1 4.5150 -0.0549 -0.3780 35 1 5.9839 0.5997 -2.2344 36 1 7.1277 1.9505 -2.0487 37 1 7.3790 0.4402 -1.1405 38 1 8.1432 4.5680 0.4110 39 1 8.0158 3.5853 -1.0673 40 1 6.6312 4.5657 -0.5286 41 1 1.0091 1.4932 4.6738 42 1 -0.5408 1.7403 3.8341 43 1 0.5370 0.4124 3.3407 44 1 2.8239 4.2898 1.9622 45 1 1.2004 4.5911 1.2979 46 1 1.8483 5.6464 2.5761 47 1 0.4799 7.1391 4.6252 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121656890.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:22 Heat of formation + Delta-G solvation = 90.694062 kcal Electronic energy + Delta-G solvation = -26618.727544 eV Core-core repulsion = 23157.592794 eV Total energy + Delta-G solvation = -3461.134749 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.87878 -38.80280 -37.17484 -36.19846 -34.84259 -33.52555 -31.68099 -31.11685 -29.68403 -28.28647 -27.49564 -27.19159 -26.04170 -23.57131 -23.28562 -21.91982 -21.14337 -20.73033 -18.51738 -18.04380 -17.48944 -17.43296 -16.73003 -16.46060 -16.23102 -15.93172 -15.52073 -15.40302 -15.02851 -14.66507 -14.49649 -14.37478 -14.20388 -13.80101 -13.63425 -13.29885 -13.22280 -13.07753 -12.98965 -12.78865 -12.68088 -12.48026 -12.41017 -12.33613 -12.24525 -12.21192 -12.17855 -12.03338 -11.44109 -11.06172 -10.93577 -10.64551 -10.58563 -10.48417 -9.87337 -9.49107 -8.58499 -8.13968 -6.28424 0.77103 0.83619 1.01518 1.44394 1.45636 1.57815 1.69350 1.76721 1.96932 2.42435 3.07698 3.18960 3.33222 3.68495 3.71517 3.89925 4.06182 4.09810 4.21839 4.22286 4.28294 4.29650 4.32383 4.50749 4.62170 4.65752 4.70581 4.75679 4.80813 4.81915 4.86110 4.88682 4.94740 4.97789 5.02249 5.05896 5.16290 5.29853 5.38882 5.58826 5.63297 5.66791 5.78462 5.93523 6.01135 6.15918 6.67836 6.83007 7.41004 7.89400 8.93518 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.013798 B = 0.004095 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.779872 B = 6835.956093 C = 7961.502848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.191 4.191 3 C 0.135 3.865 4 N -0.457 5.457 5 C 0.177 3.823 6 C -0.005 4.005 7 C -0.041 4.041 8 H 0.080 0.920 9 C -0.137 4.137 10 S -0.310 6.310 11 C -0.114 4.114 12 N -0.311 5.311 13 N -0.368 5.368 14 C 0.365 3.635 15 N -0.459 5.459 16 C 0.059 3.941 17 C 0.236 3.764 18 H -0.033 1.033 19 C -0.106 4.106 20 C -0.519 4.519 21 H 0.075 0.925 22 C 0.012 3.988 23 N -0.923 5.923 24 Si 0.969 3.031 25 H -0.258 1.258 26 H -0.285 1.285 27 H -0.280 1.280 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.135 0.865 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.010 0.990 42 H 0.089 0.911 43 H 0.068 0.932 44 H -0.003 1.003 45 H 0.040 0.960 46 H 0.064 0.936 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.403 -13.021 -18.116 23.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.210 4.210 3 C 0.014 3.986 4 N -0.150 5.150 5 C -0.092 4.092 6 C -0.045 4.045 7 C -0.171 4.171 8 H 0.099 0.901 9 C -0.196 4.196 10 S -0.085 6.085 11 C -0.282 4.282 12 N -0.150 5.150 13 N -0.211 5.211 14 C 0.008 3.992 15 N -0.185 5.185 16 C -0.088 4.088 17 C 0.131 3.869 18 H -0.016 1.016 19 C -0.165 4.165 20 C -0.557 4.557 21 H 0.093 0.907 22 C -0.187 4.187 23 N -0.562 5.562 24 Si 0.794 3.206 25 H -0.182 1.182 26 H -0.211 1.211 27 H -0.206 1.206 28 H 0.139 0.861 29 H 0.113 0.887 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.153 0.847 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.089 0.911 41 H 0.029 0.971 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.016 0.984 45 H 0.059 0.941 46 H 0.083 0.917 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.202 -12.963 -16.170 21.940 hybrid contribution -1.195 1.292 -0.683 1.888 sum 6.007 -11.671 -16.852 21.361 Atomic orbital electron populations 1.24164 0.95739 1.03079 0.95018 1.22967 0.96512 0.97078 1.04401 1.21165 0.95440 0.98350 0.83633 1.46527 1.10165 1.47724 1.10604 1.25182 0.83553 1.03652 0.96769 1.20072 0.95300 0.96201 0.92935 1.23150 0.98512 0.98484 0.96932 0.90124 1.22048 0.99979 1.02021 0.95568 1.87946 1.60731 1.33478 1.26339 1.23399 1.03935 0.97877 1.03019 1.73895 1.20662 1.16144 1.04300 1.74603 0.97913 1.20744 1.27827 1.22655 0.93308 0.99225 0.84011 1.59147 1.09407 1.04554 1.45406 1.22135 0.99897 0.94667 0.92140 1.19050 0.96184 0.80941 0.90772 1.01573 1.21504 0.94847 1.01894 0.98242 1.21360 0.92171 0.99387 1.42795 0.90702 1.25797 1.01156 0.96630 0.95128 1.70074 1.32101 1.08268 1.45759 0.85335 0.79442 0.78409 0.77411 1.18160 1.21148 1.20601 0.86090 0.88650 0.85549 0.85515 0.89372 0.87342 0.84667 0.88828 0.91658 0.90673 0.88221 0.88225 0.91136 0.97098 0.89219 0.91372 0.98437 0.94138 0.91714 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 14.32 67.78 0.97 -1.69 16 2 C -0.19 -3.66 9.85 25.65 0.25 -3.41 16 3 C 0.14 3.13 6.40 85.64 0.55 3.68 16 4 N -0.46 -14.96 2.79 -518.90 -1.45 -16.41 16 5 C 0.18 5.67 6.75 137.64 0.93 6.60 16 6 C 0.00 -0.09 4.85 29.85 0.14 0.05 16 7 C -0.04 -0.77 2.81 30.59 0.09 -0.68 16 8 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 9 C -0.14 -1.47 9.10 71.98 0.66 -0.81 16 10 S -0.31 -8.48 21.01 -56.49 -1.19 -9.67 16 11 C -0.11 -2.25 10.45 113.37 1.18 -1.07 16 12 N -0.31 -13.24 11.94 -49.54 -0.59 -13.84 16 13 N -0.37 -17.88 12.10 -58.00 -0.70 -18.58 16 14 C 0.37 15.65 5.03 260.11 1.31 16.96 16 15 N -0.46 -20.41 4.66 -711.02 -3.31 -23.72 16 16 C 0.06 2.41 9.12 127.69 1.16 3.58 16 17 C 0.24 12.65 1.99 44.17 0.09 12.73 16 18 H -0.03 -2.13 8.06 -2.39 -0.02 -2.15 16 19 C -0.11 -5.58 8.84 71.98 0.64 -4.95 16 20 C -0.52 -28.04 7.97 25.60 0.20 -27.83 16 21 H 0.07 3.84 6.40 -2.91 -0.02 3.82 16 22 C 0.01 0.65 5.30 84.65 0.45 1.10 16 23 N -0.92 -54.28 11.32 21.45 0.24 -54.04 16 24 Si 0.97 42.86 29.54 68.60 2.03 44.89 16 25 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 26 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 27 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 28 H 0.12 1.76 8.06 -2.91 -0.02 1.74 16 29 H 0.10 2.04 7.84 -2.91 -0.02 2.02 16 30 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 31 H 0.13 1.95 7.62 -2.39 -0.02 1.94 16 32 H 0.09 2.38 7.79 -2.38 -0.02 2.36 16 33 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.14 1.52 7.77 -2.38 -0.02 1.50 16 35 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.06 0.66 6.92 -2.39 -0.02 0.64 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.10 1.40 7.14 -2.39 -0.02 1.38 16 40 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.09 3.55 6.38 -2.39 -0.02 3.53 16 43 H 0.07 2.39 8.08 -2.39 -0.02 2.37 16 44 H 0.00 -0.18 7.22 -2.39 -0.02 -0.20 16 45 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.06 3.73 6.07 -2.38 -0.01 3.72 16 47 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -75.83 394.31 4.58 -71.25 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.93 Total: 15.85 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 8.62 Total: 4.27 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -5.81 Total: -126.59 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.19 Total: -9.67 kcal Total: -75.83 4.58 -71.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121656890.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.944 kcal (2) G-P(sol) polarization free energy of solvation -75.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds