Wall clock time and date at job start Tue Mar 31 2020 13:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 110.31110 * 2 1 4 4 C 1.54797 * 110.61599 * 237.82138 * 2 1 3 5 5 N 1.48145 * 104.41590 * 265.18432 * 4 2 1 6 6 C 1.34778 * 127.83945 * 140.37381 * 5 4 2 7 7 O 1.21275 * 119.99959 * 179.67603 * 6 5 4 8 8 C 1.50700 * 119.99540 * 359.66724 * 6 5 4 9 9 C 1.53000 * 109.46990 * 180.02562 * 8 6 5 10 10 H 1.09002 * 110.62615 * 308.10179 * 9 8 6 11 11 C 1.54372 * 110.85014 * 71.29060 * 9 8 6 12 12 O 1.45943 * 105.07166 * 136.27741 * 11 9 8 13 13 C 1.34763 * 108.47940 * 327.63534 * 12 11 9 14 14 O 1.20825 * 126.04735 * 213.31253 * 13 12 11 15 15 C 1.51511 * 108.00490 * 33.18544 * 13 12 11 16 16 C 1.48147 * 104.32242 * 320.10082 * 5 4 2 17 17 C 1.54290 * 110.34287 * 122.17626 * 2 1 3 18 18 C 1.53000 * 110.33768 * 0.10335 * 17 2 1 19 19 C 1.53002 * 110.34418 * 237.85048 * 17 2 1 20 20 N 1.46497 * 109.47296 * 183.00967 * 19 17 2 21 21 C 1.36931 * 120.00143 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99892 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00333 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99915 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00235 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47159 * 60.00032 * 25 23 21 27 27 H 1.48507 * 109.47028 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47215 * 299.99629 * 25 23 21 29 29 H 1.08994 * 109.47608 * 297.82766 * 1 2 3 30 30 H 1.09006 * 109.47234 * 57.82587 * 1 2 3 31 31 H 1.08997 * 109.47598 * 177.82361 * 1 2 3 32 32 H 1.09002 * 110.54315 * 146.44532 * 4 2 1 33 33 H 1.08997 * 110.46173 * 23.87854 * 4 2 1 34 34 H 1.08997 * 109.46813 * 60.01110 * 8 6 5 35 35 H 1.08999 * 109.47574 * 300.00523 * 8 6 5 36 36 H 1.08995 * 110.32483 * 255.18474 * 11 9 8 37 37 H 1.09008 * 110.32004 * 17.38328 * 11 9 8 38 38 H 1.09002 * 110.40532 * 220.92048 * 15 13 12 39 39 H 1.08998 * 110.40559 * 98.61445 * 15 13 12 40 40 H 1.09004 * 110.40408 * 158.63466 * 16 5 4 41 41 H 1.08993 * 110.41333 * 281.06697 * 16 5 4 42 42 H 1.09006 * 109.47093 * 176.99302 * 18 17 2 43 43 H 1.08997 * 109.47483 * 296.99103 * 18 17 2 44 44 H 1.09001 * 109.47589 * 56.99370 * 18 17 2 45 45 H 1.09004 * 109.46614 * 303.00550 * 19 17 2 46 46 H 1.08996 * 109.47047 * 62.99798 * 19 17 2 47 47 H 0.97001 * 119.99550 * 359.97438 * 20 19 17 48 48 H 0.96993 * 120.00401 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0750 -0.7716 -1.2263 5 7 2.3176 -2.1430 -0.7211 6 6 2.0834 -3.3103 -1.3529 7 8 2.3430 -4.3598 -0.8035 8 6 1.4987 -3.3111 -2.7418 9 6 1.3339 -4.7535 -3.2248 10 1 2.2672 -5.3051 -3.1123 11 6 0.1885 -5.4591 -2.4676 12 8 -0.5550 -6.1834 -3.4934 13 6 -0.4914 -5.4821 -4.6424 14 8 -1.3556 -5.4168 -5.4843 15 6 0.8536 -4.7864 -4.6926 16 6 2.8823 -1.9400 0.6333 17 6 2.0663 -0.7704 1.2245 18 6 0.9060 -1.3037 2.0672 19 6 2.9670 0.1334 2.0688 20 7 3.5224 -0.6360 3.1849 21 6 4.3630 -0.0323 4.0815 22 1 4.6169 1.0111 3.9656 23 6 4.8888 -0.7612 5.1394 24 7 4.5790 -2.0325 5.2809 25 14 6.0362 0.0623 6.3621 26 1 5.3307 1.1913 7.0199 27 1 6.4556 -0.9247 7.3894 28 1 7.2338 0.5748 5.6493 29 1 -0.3634 0.4797 0.9087 30 1 -0.3634 0.5472 -0.8699 31 1 -0.3634 -1.0269 -0.0390 32 1 3.0058 -0.3252 -1.5763 33 1 1.3351 -0.7867 -2.0266 34 1 2.1658 -2.7755 -3.4172 35 1 0.5257 -2.8199 -2.7269 36 1 0.5929 -6.1538 -1.7315 37 1 -0.4538 -4.7240 -1.9825 38 1 0.7432 -3.7732 -5.0791 39 1 1.5519 -5.3532 -5.3083 40 1 2.7523 -2.8378 1.2377 41 1 3.9372 -1.6734 0.5694 42 1 1.2995 -1.8899 2.8978 43 1 0.3249 -0.4675 2.4560 44 1 0.2670 -1.9337 1.4485 45 1 3.7797 0.5156 1.4510 46 1 2.3828 0.9675 2.4574 47 1 3.2940 -1.5730 3.2892 48 1 4.9461 -2.5418 6.0203 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181119365.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:23 Heat of formation + Delta-G solvation = -105.540466 kcal Electronic energy + Delta-G solvation = -28438.493849 eV Core-core repulsion = 24493.804110 eV Total energy + Delta-G solvation = -3944.689739 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.35421 -40.35392 -38.57770 -37.69230 -34.87601 -34.53754 -33.20944 -31.56274 -29.92564 -29.34268 -28.00347 -27.01387 -25.59602 -25.29715 -23.31113 -21.82904 -21.58654 -21.20274 -19.39900 -18.57659 -17.72914 -17.22798 -16.91898 -16.73537 -16.62924 -16.18969 -15.43625 -15.04670 -14.56079 -14.32091 -14.22289 -14.07172 -13.89277 -13.70684 -13.36082 -13.11260 -13.07284 -12.92644 -12.55430 -12.47008 -12.21743 -12.06023 -11.76672 -11.63572 -11.54683 -11.34858 -11.31258 -11.04454 -10.89035 -10.82341 -10.55361 -10.48626 -10.39909 -10.26035 -9.96172 -9.86859 -9.64959 -8.90575 -8.68975 -6.95251 -5.78457 -3.07652 1.57062 2.51892 2.83384 3.06286 3.42182 3.46744 3.47971 3.61684 3.82146 4.10284 4.21815 4.45100 4.49149 4.57936 4.74374 4.77882 4.85140 4.89331 4.99842 5.09274 5.19354 5.24032 5.34383 5.36357 5.38540 5.41727 5.51840 5.58460 5.62293 5.73253 5.82858 5.92983 5.98304 6.03729 6.09971 6.16275 6.19796 6.34614 6.38782 6.52147 6.61970 6.71787 6.80417 7.07067 7.53616 7.66840 8.06287 8.40010 9.51333 10.08186 10.42518 11.44072 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.002580 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.260610 B =10852.105767 C =11442.049883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.088 0.912 4 C 0.103 3.897 5 N -0.619 5.619 6 C 0.529 3.471 7 O -0.539 6.539 8 C -0.131 4.131 9 C -0.106 4.106 10 H 0.112 0.888 11 C 0.064 3.936 12 O -0.355 6.355 13 C 0.485 3.515 14 O -0.453 6.453 15 C -0.184 4.184 16 C 0.119 3.881 17 C -0.075 4.075 18 C -0.131 4.131 19 C 0.168 3.832 20 N -0.730 5.730 21 C -0.242 4.242 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.122 0.878 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.047 0.953 45 H 0.020 0.980 46 H 0.022 0.978 47 H 0.385 0.615 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.397 0.416 -19.901 21.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.106 0.894 4 C -0.020 4.020 5 N -0.353 5.353 6 C 0.317 3.683 7 O -0.416 6.416 8 C -0.171 4.171 9 C -0.125 4.125 10 H 0.130 0.870 11 C -0.010 4.010 12 O -0.272 6.272 13 C 0.325 3.675 14 O -0.335 6.335 15 C -0.222 4.222 16 C -0.002 4.002 17 C -0.076 4.076 18 C -0.188 4.188 19 C 0.040 3.960 20 N -0.375 5.375 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.140 0.860 37 H 0.101 0.899 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.038 0.962 46 H 0.040 0.960 47 H 0.219 0.781 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.702 -0.313 -19.922 21.742 hybrid contribution 0.820 0.402 0.832 1.235 sum -7.882 0.089 -19.091 20.654 Atomic orbital electron populations 1.21902 0.94518 1.01767 1.01717 1.22209 0.96198 0.99599 0.93781 0.89368 1.22612 1.00569 0.81940 0.96900 1.49046 1.62747 1.05265 1.18197 1.20052 0.78531 0.82419 0.87307 1.90741 1.52880 1.30327 1.67692 1.21764 1.03315 0.97156 0.94903 1.22181 1.01170 0.96361 0.92788 0.86977 1.24221 0.91260 0.96704 0.88807 1.87348 1.71779 1.46085 1.22024 1.23342 0.87789 0.75413 0.80950 1.90711 1.44771 1.57085 1.40974 1.23025 0.96300 1.04287 0.98603 1.22496 0.97300 0.99008 0.81422 1.21705 0.96223 0.95174 0.94505 1.21858 0.96802 1.00744 0.99431 1.20712 0.93311 0.92846 0.89131 1.42374 1.55983 1.11019 1.28147 1.19148 1.19805 0.94638 1.03720 0.91300 1.24734 1.01006 0.95904 0.99168 1.69640 1.48432 1.07029 1.32906 0.86282 0.80792 0.78127 0.81040 1.21311 1.21709 1.21305 0.91765 0.93159 0.92509 0.90750 0.90538 0.87826 0.88501 0.86020 0.89918 0.87021 0.86346 0.89593 0.90342 0.91571 0.92473 0.93395 0.96249 0.95989 0.78073 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 7.95 37.15 0.30 -0.98 16 2 C -0.10 -1.01 3.30 -89.00 -0.29 -1.30 16 3 H 0.09 0.86 7.71 -51.93 -0.40 0.46 16 4 C 0.10 0.90 6.49 -2.19 -0.01 0.88 16 5 N -0.62 -7.24 3.31 -169.06 -0.56 -7.80 16 6 C 0.53 6.06 7.75 -10.98 -0.09 5.97 16 7 O -0.54 -8.24 15.53 5.56 0.09 -8.16 16 8 C -0.13 -0.87 3.88 -27.88 -0.11 -0.98 16 9 C -0.11 -0.73 2.75 -89.13 -0.24 -0.97 16 10 H 0.11 0.83 7.88 -51.93 -0.41 0.42 16 11 C 0.06 0.54 6.62 37.88 0.25 0.79 16 12 O -0.35 -3.77 11.17 -40.27 -0.45 -4.22 16 13 C 0.49 4.87 8.52 36.40 0.31 5.18 16 14 O -0.45 -6.07 18.00 -18.30 -0.33 -6.40 16 15 C -0.18 -1.08 6.60 -26.71 -0.18 -1.26 16 16 C 0.12 1.81 5.54 -2.41 -0.01 1.80 16 17 C -0.07 -1.06 0.73 -153.11 -0.11 -1.18 16 18 C -0.13 -1.94 7.08 37.16 0.26 -1.67 16 19 C 0.17 3.06 4.85 -4.04 -0.02 3.04 16 20 N -0.73 -17.42 5.12 -59.91 -0.31 -17.73 16 21 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 22 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 25 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H 0.06 0.62 6.89 -51.93 -0.36 0.27 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.54 6.72 -51.93 -0.35 0.19 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.46 7.04 -51.93 -0.37 0.10 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.50 7.79 -51.93 -0.40 0.10 16 36 H 0.12 1.09 8.07 -51.93 -0.42 0.67 16 37 H 0.08 0.65 7.70 -51.92 -0.40 0.25 16 38 H 0.11 0.47 7.74 -51.93 -0.40 0.06 16 39 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 1.54 7.60 -51.93 -0.39 1.14 16 41 H 0.08 1.31 7.86 -51.93 -0.41 0.90 16 42 H 0.07 1.18 7.01 -51.93 -0.36 0.82 16 43 H 0.06 0.81 6.98 -51.93 -0.36 0.44 16 44 H 0.05 0.64 6.62 -51.93 -0.34 0.29 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.38 9.74 6.28 -40.82 -0.26 9.48 16 48 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 379.50 15.07 5.72 5.72 Total: -1.00 -33.69 379.50 -8.05 -41.75 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -7.72 Total: 4.61 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -0.19 Total: 2.21 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.14 Total: -52.54 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.69 Total: -18.78 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.69 -8.05 -41.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181119365.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.793 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds