Wall clock time and date at job start Tue Mar 31 2020 13:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 110.31110 * 2 1 4 4 C 1.54797 * 110.61599 * 237.82138 * 2 1 3 5 5 N 1.48145 * 104.41590 * 265.18432 * 4 2 1 6 6 C 1.34778 * 127.83945 * 140.37381 * 5 4 2 7 7 O 1.21275 * 119.99959 * 179.67603 * 6 5 4 8 8 C 1.50700 * 119.99540 * 359.66724 * 6 5 4 9 9 C 1.53000 * 109.46990 * 180.02562 * 8 6 5 10 10 H 1.09002 * 110.62615 * 308.10179 * 9 8 6 11 11 C 1.54372 * 110.85014 * 71.29060 * 9 8 6 12 12 O 1.45943 * 105.07166 * 136.27741 * 11 9 8 13 13 C 1.34763 * 108.47940 * 327.63534 * 12 11 9 14 14 O 1.20825 * 126.04735 * 213.31253 * 13 12 11 15 15 C 1.51511 * 108.00490 * 33.18544 * 13 12 11 16 16 C 1.48147 * 104.32242 * 320.10082 * 5 4 2 17 17 C 1.54290 * 110.34287 * 122.17626 * 2 1 3 18 18 C 1.53000 * 110.33768 * 0.10335 * 17 2 1 19 19 C 1.53002 * 110.34418 * 237.85048 * 17 2 1 20 20 N 1.46497 * 109.47296 * 183.00967 * 19 17 2 21 21 C 1.36931 * 120.00143 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99892 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00333 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99915 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00235 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47159 * 60.00032 * 25 23 21 27 27 H 1.48507 * 109.47028 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47215 * 299.99629 * 25 23 21 29 29 H 1.08994 * 109.47608 * 297.82766 * 1 2 3 30 30 H 1.09006 * 109.47234 * 57.82587 * 1 2 3 31 31 H 1.08997 * 109.47598 * 177.82361 * 1 2 3 32 32 H 1.09002 * 110.54315 * 146.44532 * 4 2 1 33 33 H 1.08997 * 110.46173 * 23.87854 * 4 2 1 34 34 H 1.08997 * 109.46813 * 60.01110 * 8 6 5 35 35 H 1.08999 * 109.47574 * 300.00523 * 8 6 5 36 36 H 1.08995 * 110.32483 * 255.18474 * 11 9 8 37 37 H 1.09008 * 110.32004 * 17.38328 * 11 9 8 38 38 H 1.09002 * 110.40532 * 220.92048 * 15 13 12 39 39 H 1.08998 * 110.40559 * 98.61445 * 15 13 12 40 40 H 1.09004 * 110.40408 * 158.63466 * 16 5 4 41 41 H 1.08993 * 110.41333 * 281.06697 * 16 5 4 42 42 H 1.09006 * 109.47093 * 176.99302 * 18 17 2 43 43 H 1.08997 * 109.47483 * 296.99103 * 18 17 2 44 44 H 1.09001 * 109.47589 * 56.99370 * 18 17 2 45 45 H 1.09004 * 109.46614 * 303.00550 * 19 17 2 46 46 H 1.08996 * 109.47047 * 62.99798 * 19 17 2 47 47 H 0.97001 * 119.99550 * 359.97438 * 20 19 17 48 48 H 0.96993 * 120.00401 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0750 -0.7716 -1.2263 5 7 2.3176 -2.1430 -0.7211 6 6 2.0834 -3.3103 -1.3529 7 8 2.3430 -4.3598 -0.8035 8 6 1.4987 -3.3111 -2.7418 9 6 1.3339 -4.7535 -3.2248 10 1 2.2672 -5.3051 -3.1123 11 6 0.1885 -5.4591 -2.4676 12 8 -0.5550 -6.1834 -3.4934 13 6 -0.4914 -5.4821 -4.6424 14 8 -1.3556 -5.4168 -5.4843 15 6 0.8536 -4.7864 -4.6926 16 6 2.8823 -1.9400 0.6333 17 6 2.0663 -0.7704 1.2245 18 6 0.9060 -1.3037 2.0672 19 6 2.9670 0.1334 2.0688 20 7 3.5224 -0.6360 3.1849 21 6 4.3630 -0.0323 4.0815 22 1 4.6169 1.0111 3.9656 23 6 4.8888 -0.7612 5.1394 24 7 4.5790 -2.0325 5.2809 25 14 6.0362 0.0623 6.3621 26 1 5.3307 1.1913 7.0199 27 1 6.4556 -0.9247 7.3894 28 1 7.2338 0.5748 5.6493 29 1 -0.3634 0.4797 0.9087 30 1 -0.3634 0.5472 -0.8699 31 1 -0.3634 -1.0269 -0.0390 32 1 3.0058 -0.3252 -1.5763 33 1 1.3351 -0.7867 -2.0266 34 1 2.1658 -2.7755 -3.4172 35 1 0.5257 -2.8199 -2.7269 36 1 0.5929 -6.1538 -1.7315 37 1 -0.4538 -4.7240 -1.9825 38 1 0.7432 -3.7732 -5.0791 39 1 1.5519 -5.3532 -5.3083 40 1 2.7523 -2.8378 1.2377 41 1 3.9372 -1.6734 0.5694 42 1 1.2995 -1.8899 2.8978 43 1 0.3249 -0.4675 2.4560 44 1 0.2670 -1.9337 1.4485 45 1 3.7797 0.5156 1.4510 46 1 2.3828 0.9675 2.4574 47 1 3.2940 -1.5730 3.2892 48 1 4.9461 -2.5418 6.0203 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181119365.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:22 Heat of formation + Delta-G solvation = -127.657059 kcal Electronic energy + Delta-G solvation = -28439.452896 eV Core-core repulsion = 24493.804110 eV Total energy + Delta-G solvation = -3945.648787 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.08740 -41.32051 -39.56614 -38.54859 -36.46599 -35.20807 -34.52140 -33.02842 -31.27833 -30.14438 -28.79831 -28.08421 -26.68829 -26.54859 -24.96461 -22.70352 -22.31303 -22.13503 -20.28008 -19.80458 -19.03831 -18.33925 -17.75819 -17.59948 -17.44061 -17.17957 -16.55585 -16.23603 -15.89082 -15.54751 -15.30767 -15.07729 -14.81214 -14.69402 -14.62729 -14.40004 -14.02688 -13.87586 -13.52001 -13.40972 -13.13331 -13.02677 -12.87425 -12.79345 -12.57416 -12.42993 -12.40510 -12.28077 -12.22201 -12.11875 -11.94315 -11.55571 -11.45668 -11.35543 -11.28905 -11.17165 -10.92169 -10.79255 -9.67201 -8.96653 -7.93151 -5.21367 0.84176 1.47123 1.49923 1.56048 1.66817 1.96604 2.36914 2.56908 3.01188 3.22218 3.40102 3.46381 3.58094 3.62463 3.70353 3.84950 3.99704 4.20256 4.25677 4.31986 4.32856 4.38920 4.43316 4.52643 4.61042 4.65275 4.66629 4.74381 4.76305 4.82948 4.86340 4.87430 4.96614 5.05605 5.09168 5.10577 5.12905 5.16938 5.29946 5.42039 5.47912 5.52778 5.63638 5.66855 6.28603 6.33540 6.67237 7.18667 7.35210 8.13127 8.34381 9.30254 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.002580 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.260610 B =10852.105767 C =11442.049883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 H 0.100 0.900 4 C 0.104 3.896 5 N -0.618 5.618 6 C 0.521 3.479 7 O -0.588 6.588 8 C -0.119 4.119 9 C -0.100 4.100 10 H 0.105 0.895 11 C 0.060 3.940 12 O -0.379 6.379 13 C 0.481 3.519 14 O -0.495 6.495 15 C -0.163 4.163 16 C 0.125 3.875 17 C -0.068 4.068 18 C -0.122 4.122 19 C 0.166 3.834 20 N -0.743 5.743 21 C -0.241 4.241 22 H 0.078 0.922 23 C -0.078 4.078 24 N -0.972 5.972 25 Si 0.972 3.028 26 H -0.277 1.277 27 H -0.299 1.299 28 H -0.277 1.277 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.140 0.860 35 H 0.125 0.875 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.044 0.956 41 H 0.057 0.943 42 H 0.023 0.977 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.373 0.627 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.750 3.082 -22.810 24.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.118 0.882 4 C -0.018 4.018 5 N -0.351 5.351 6 C 0.312 3.688 7 O -0.469 6.469 8 C -0.158 4.158 9 C -0.119 4.119 10 H 0.123 0.877 11 C -0.014 4.014 12 O -0.297 6.297 13 C 0.324 3.676 14 O -0.381 6.381 15 C -0.201 4.201 16 C 0.002 3.998 17 C -0.069 4.069 18 C -0.179 4.179 19 C 0.039 3.961 20 N -0.386 5.386 21 C -0.373 4.373 22 H 0.096 0.904 23 C -0.270 4.270 24 N -0.623 5.623 25 Si 0.801 3.199 26 H -0.203 1.203 27 H -0.226 1.226 28 H -0.203 1.203 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.138 0.862 34 H 0.158 0.842 35 H 0.143 0.857 36 H 0.125 0.875 37 H 0.108 0.892 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.042 0.958 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.205 0.795 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.062 2.419 -22.871 24.719 hybrid contribution 0.906 -0.443 1.746 2.016 sum -8.155 1.976 -21.125 22.731 Atomic orbital electron populations 1.21877 0.93090 1.01876 1.02729 1.22227 0.97294 0.99709 0.91940 0.88166 1.22866 1.02460 0.79454 0.96970 1.49123 1.62333 1.07022 1.16630 1.21068 0.77576 0.81379 0.88813 1.90732 1.54818 1.32138 1.69196 1.21838 1.05033 0.97370 0.91599 1.22120 1.00023 0.96491 0.93248 0.87668 1.24296 0.91996 0.96604 0.88463 1.87316 1.72400 1.47019 1.22969 1.24027 0.88777 0.74799 0.79955 1.90686 1.46551 1.58740 1.42079 1.22997 0.93466 1.05711 0.97919 1.22099 0.96644 0.97537 0.83556 1.21579 0.95039 0.94681 0.95614 1.21763 0.97153 1.00595 0.98400 1.20909 0.93953 0.93144 0.88060 1.42613 1.55824 1.10921 1.29280 1.19607 1.19019 0.94972 1.03688 0.90436 1.25557 1.03374 0.96547 1.01514 1.69820 1.50271 1.08588 1.33575 0.85233 0.79058 0.77032 0.78574 1.20331 1.22592 1.20333 0.92777 0.90043 0.92985 0.89453 0.86210 0.84187 0.85736 0.87465 0.89215 0.83930 0.84311 0.93720 0.92494 0.95786 0.91743 0.91888 0.95611 0.95659 0.79463 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 7.95 71.98 0.57 -1.37 16 2 C -0.09 -1.58 3.30 -9.75 -0.03 -1.62 16 3 H 0.10 1.55 7.71 -2.39 -0.02 1.53 16 4 C 0.10 1.35 6.49 86.68 0.56 1.91 16 5 N -0.62 -13.29 3.31 -807.17 -2.67 -15.96 16 6 C 0.52 10.98 7.75 87.66 0.68 11.66 16 7 O -0.59 -18.30 15.53 -3.01 -0.05 -18.34 16 8 C -0.12 -1.05 3.88 29.85 0.12 -0.93 16 9 C -0.10 -1.09 2.75 -9.83 -0.03 -1.12 16 10 H 0.11 1.36 7.88 -2.39 -0.02 1.34 16 11 C 0.06 0.97 6.62 72.45 0.48 1.45 16 12 O -0.38 -7.89 11.17 -57.11 -0.64 -8.53 16 13 C 0.48 8.88 8.52 71.49 0.61 9.49 16 14 O -0.50 -12.82 18.00 21.53 0.39 -12.43 16 15 C -0.16 -1.29 6.60 30.60 0.20 -1.09 16 16 C 0.13 3.91 5.54 86.53 0.48 4.39 16 17 C -0.07 -1.90 0.73 -51.27 -0.04 -1.94 16 18 C -0.12 -3.67 7.08 71.98 0.51 -3.16 16 19 C 0.17 6.03 4.85 86.38 0.42 6.45 16 20 N -0.74 -36.60 5.12 -343.46 -1.76 -38.36 16 21 C -0.24 -13.21 9.99 84.03 0.84 -12.37 16 22 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 23 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 24 N -0.97 -60.16 13.06 21.65 0.28 -59.87 16 25 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 27 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 28 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 29 H 0.05 0.89 6.89 -2.39 -0.02 0.87 16 30 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.05 0.79 6.72 -2.39 -0.02 0.78 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.12 0.60 7.04 -2.39 -0.02 0.59 16 34 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.12 0.52 7.79 -2.39 -0.02 0.50 16 36 H 0.11 2.02 8.07 -2.39 -0.02 2.00 16 37 H 0.09 1.29 7.70 -2.38 -0.02 1.27 16 38 H 0.14 0.34 7.74 -2.39 -0.02 0.32 16 39 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.04 1.74 7.60 -2.38 -0.02 1.72 16 41 H 0.06 1.98 7.86 -2.39 -0.02 1.97 16 42 H 0.02 0.90 7.01 -2.38 -0.02 0.88 16 43 H 0.06 1.81 6.98 -2.39 -0.02 1.79 16 44 H 0.06 1.67 6.62 -2.39 -0.02 1.66 16 45 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 46 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.37 20.03 6.28 -92.71 -0.58 19.45 16 48 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -79.58 379.50 3.80 -75.78 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.38 Total: 21.89 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 5.84 Total: 7.74 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -4.15 Total: -114.20 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.30 Total: -39.30 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -79.58 3.80 -75.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181119365.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.875 kcal (2) G-P(sol) polarization free energy of solvation -79.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds