Wall clock time and date at job start Tue Mar 31 2020 14:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.63000 * 2 1 4 4 C 1.53250 * 109.62640 * 239.40173 * 2 1 3 5 5 N 1.46472 * 109.85214 * 178.29465 * 4 2 1 6 6 C 1.38583 * 110.99745 * 197.76940 * 5 4 2 7 7 N 1.31220 * 126.46946 * 270.21966 * 6 5 4 8 8 N 1.28534 * 109.85489 * 179.82303 * 7 6 5 9 9 C 1.30292 * 110.05630 * 0.44928 * 8 7 6 10 10 C 1.50693 * 126.34857 * 179.76326 * 9 8 7 11 11 C 1.53001 * 109.47370 * 269.96283 * 10 9 8 12 12 C 1.53002 * 109.47206 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46852 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00190 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99831 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99863 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99913 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47549 * 90.00167 * 17 15 13 19 19 H 1.48504 * 109.47001 * 210.00289 * 17 15 13 20 20 H 1.48502 * 109.47085 * 329.99635 * 17 15 13 21 21 N 1.36447 * 126.47509 * 90.53075 * 6 5 4 22 22 C 1.46511 * 127.13546 * 0.02562 * 21 6 5 23 23 C 1.46468 * 112.55921 * 72.66300 * 5 4 2 24 24 C 1.53248 * 109.85651 * 287.33576 * 23 5 4 25 25 H 1.08995 * 109.63553 * 302.29776 * 24 23 5 26 26 C 1.53004 * 109.62935 * 181.90482 * 24 23 5 27 27 S 1.81899 * 109.62558 * 120.39346 * 2 1 3 28 28 H 1.09002 * 109.47001 * 299.60902 * 1 2 3 29 29 H 1.09004 * 109.46756 * 59.60349 * 1 2 3 30 30 H 1.08994 * 109.47530 * 179.60398 * 1 2 3 31 31 H 1.09001 * 109.40308 * 58.18609 * 4 2 1 32 32 H 1.08994 * 109.41122 * 298.40981 * 4 2 1 33 33 H 1.09005 * 109.47347 * 29.96019 * 10 9 8 34 34 H 1.08999 * 109.47136 * 149.95846 * 10 9 8 35 35 H 1.09008 * 109.46807 * 299.99632 * 11 10 9 36 36 H 1.08999 * 109.47348 * 59.99692 * 11 10 9 37 37 H 1.08998 * 109.46666 * 299.99336 * 12 11 10 38 38 H 1.08999 * 109.47382 * 59.99513 * 12 11 10 39 39 H 0.97006 * 119.99750 * 180.02562 * 16 15 13 40 40 H 1.08996 * 109.46701 * 95.61953 * 22 21 6 41 41 H 1.09005 * 109.46901 * 215.62088 * 22 21 6 42 42 H 1.08999 * 109.46762 * 335.62203 * 22 21 6 43 43 H 1.08996 * 109.40779 * 47.46069 * 23 5 4 44 44 H 1.09005 * 109.40660 * 167.22219 * 23 5 4 45 45 H 1.08997 * 109.46857 * 60.00167 * 26 24 23 46 46 H 1.08997 * 109.46995 * 180.02562 * 26 24 23 47 47 H 1.08996 * 109.47202 * 300.00288 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0448 -0.7347 -1.2425 5 7 3.5089 -0.7025 -1.2685 6 6 3.9896 -0.9917 -2.5357 7 7 4.2832 -2.1810 -3.0059 8 7 4.6988 -2.0809 -4.2181 9 6 4.7040 -0.8313 -4.5868 10 6 5.1283 -0.2985 -5.9311 11 6 6.6247 0.0191 -5.9047 12 6 7.0554 0.5607 -7.2693 13 6 8.5292 0.8740 -7.2430 14 1 9.1016 0.7035 -6.3432 15 6 9.1471 1.3774 -8.3682 16 7 8.4502 1.5845 -9.4641 17 14 10.9741 1.7651 -8.3358 18 1 11.7424 0.5652 -8.7541 19 1 11.2590 2.8852 -9.2684 20 1 11.3734 2.1536 -6.9592 21 7 4.2524 -0.0929 -3.5282 22 6 4.0858 1.3615 -3.4712 23 6 4.1083 -1.5858 -0.2656 24 6 3.9230 -0.9869 1.1328 25 1 4.3706 0.0062 1.1682 26 6 4.5921 -1.8896 2.1713 27 16 2.1410 -0.8668 1.4779 28 1 -0.3633 0.5078 0.8935 29 1 -0.3633 0.5200 -0.8865 30 1 -0.3634 -1.0276 -0.0071 31 1 1.6559 -0.2490 -2.1375 32 1 1.7058 -1.7703 -1.2173 33 1 4.9293 -1.0471 -6.6980 34 1 4.5681 0.6092 -6.1554 35 1 6.8238 0.7678 -5.1378 36 1 7.1849 -0.8886 -5.6803 37 1 6.8563 -0.1877 -8.0364 38 1 6.4951 1.4684 -7.4933 39 1 8.8850 1.9383 -10.2558 40 1 5.0367 1.8261 -3.2104 41 1 3.7569 1.7279 -4.4437 42 1 3.3399 1.6125 -2.7170 43 1 3.6260 -2.5623 -0.3083 44 1 5.1725 -1.6994 -0.4727 45 1 5.6564 -1.9706 1.9505 46 1 4.4583 -1.4616 3.1648 47 1 4.1378 -2.8799 2.1386 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262867393.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:19 Heat of formation + Delta-G solvation = 67.013098 kcal Electronic energy + Delta-G solvation = -25355.250067 eV Core-core repulsion = 21893.088434 eV Total energy + Delta-G solvation = -3462.161633 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.96220 -38.83279 -35.33551 -34.70512 -34.53753 -33.24955 -32.26724 -29.70824 -27.76245 -27.40365 -26.99056 -25.61106 -23.78040 -22.42261 -21.79881 -20.88126 -20.82551 -20.09975 -17.57461 -17.19328 -16.68745 -16.32594 -16.05150 -15.81607 -15.31310 -14.71086 -14.54044 -14.33826 -14.08638 -13.88116 -13.51651 -13.45842 -13.16879 -12.90022 -12.67557 -12.61435 -12.35892 -12.13761 -12.07771 -11.95202 -11.65108 -11.58778 -11.44039 -10.98283 -10.91146 -10.83382 -10.64958 -10.53918 -10.14046 -10.06616 -9.81029 -9.61874 -9.38524 -9.16338 -8.57723 -8.39029 -8.06088 -6.04330 -4.06651 1.28702 1.72593 2.09572 2.12543 2.89066 3.29893 3.29909 3.36246 3.39332 4.14236 4.26620 4.41942 4.50304 4.54509 4.56436 4.63394 4.64788 4.74097 4.92034 5.00527 5.02322 5.05988 5.17971 5.21921 5.26223 5.31970 5.32774 5.34269 5.42640 5.43004 5.57810 5.63383 5.74187 5.78293 5.83367 5.96220 6.03905 6.29203 6.51961 6.56842 6.70838 6.98156 7.09288 7.60583 7.73431 7.94709 8.37066 8.80901 8.99810 9.57746 11.06929 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.021965 B = 0.002368 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.463194 B =11821.801543 C =12273.242527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.046 4.046 3 H 0.098 0.902 4 C 0.067 3.933 5 N -0.471 5.471 6 C 0.330 3.670 7 N -0.310 5.310 8 N -0.290 5.290 9 C 0.209 3.791 10 C -0.036 4.036 11 C -0.102 4.102 12 C 0.023 3.977 13 C -0.521 4.521 14 H 0.054 0.946 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 N -0.469 5.469 22 C 0.080 3.920 23 C 0.077 3.923 24 C -0.047 4.047 25 H 0.098 0.902 26 C -0.133 4.133 27 S -0.260 6.260 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.020 0.980 38 H 0.017 0.983 39 H 0.261 0.739 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.445 -1.014 21.597 27.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.176 4.176 3 H 0.116 0.884 4 C -0.062 4.062 5 N -0.196 5.196 6 C -0.027 4.027 7 N -0.154 5.154 8 N -0.130 5.130 9 C -0.058 4.058 10 C -0.076 4.076 11 C -0.141 4.141 12 C -0.014 4.014 13 C -0.559 4.559 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.719 3.281 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 N -0.163 5.163 22 C -0.063 4.063 23 C -0.052 4.052 24 C -0.176 4.176 25 H 0.116 0.884 26 C -0.191 4.191 27 S -0.033 6.033 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.039 0.961 38 H 0.035 0.965 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.712 -2.315 22.396 28.040 hybrid contribution 1.355 1.561 -1.151 2.367 sum -15.357 -0.754 21.244 26.224 Atomic orbital electron populations 1.21599 0.91102 1.03419 1.03060 1.23213 0.99335 1.01606 0.93408 0.88376 1.22443 0.84527 1.01119 0.98139 1.57663 1.07669 1.54774 0.99452 1.21979 1.05537 0.85875 0.89264 1.74571 1.17823 1.18349 1.04669 1.74072 1.18560 1.15430 1.04909 1.25380 0.99634 0.88040 0.92792 1.20392 0.99383 1.01076 0.86750 1.21651 0.90304 1.00575 1.01554 1.19098 0.96157 0.96091 0.90053 1.21213 0.94270 1.42647 0.97796 0.92742 1.25009 0.98137 0.95672 0.95557 1.69958 1.35873 1.45414 1.02192 0.86601 0.85571 0.78029 0.77860 1.20578 1.21205 1.19927 1.46184 1.49100 1.09098 1.11874 1.22042 1.04098 0.75654 1.04540 1.22292 1.01138 0.93915 0.87848 1.23266 0.93682 1.03704 0.96938 0.88411 1.21589 1.00624 0.99367 0.97560 1.87020 1.07944 1.77619 1.30725 0.91131 0.90884 0.91383 0.89755 0.91655 0.88360 0.90323 0.93560 0.92426 0.96142 0.96489 0.92955 0.89706 0.89069 0.89327 0.91281 0.88947 0.90666 0.91257 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.78 9.23 37.16 0.34 -0.43 16 2 C -0.05 -0.35 3.34 -26.60 -0.09 -0.43 16 3 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.07 0.60 4.66 -3.93 -0.02 0.59 16 5 N -0.47 -5.12 4.37 -174.90 -0.76 -5.89 16 6 C 0.33 4.64 6.50 -318.87 -2.07 2.57 16 7 N -0.31 -5.32 11.75 30.31 0.36 -4.97 16 8 N -0.29 -5.40 12.18 32.99 0.40 -4.99 16 9 C 0.21 3.41 7.32 -154.02 -1.13 2.29 16 10 C -0.04 -0.59 5.59 -27.89 -0.16 -0.74 16 11 C -0.10 -2.03 5.14 -26.73 -0.14 -2.16 16 12 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 13 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 17 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 21 N -0.47 -6.42 3.21 -121.45 -0.39 -6.81 16 22 C 0.08 0.77 11.01 59.85 0.66 1.43 16 23 C 0.08 0.79 4.31 -3.93 -0.02 0.77 16 24 C -0.05 -0.39 3.33 -26.60 -0.09 -0.48 16 25 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 26 C -0.13 -0.91 9.24 37.16 0.34 -0.57 16 27 S -0.26 -2.28 21.15 -107.50 -2.27 -4.55 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 32 H 0.07 0.66 7.91 -51.93 -0.41 0.25 16 33 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.08 1.11 7.40 -51.93 -0.38 0.73 16 35 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.77 7.43 -51.93 -0.39 0.39 16 42 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 43 H 0.07 0.77 7.91 -51.93 -0.41 0.35 16 44 H 0.09 1.05 7.93 -51.93 -0.41 0.63 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -32.44 390.67 -12.27 -44.71 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -8.30 Total: -4.16 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -2.91 Total: -10.02 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.34 Total: -48.31 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -2.28 SS G_CDS: -2.27 Total: -4.55 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.44 -12.27 -44.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262867393.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.724 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds