Wall clock time and date at job start Tue Mar 31 2020 14:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.63000 * 2 1 4 4 C 1.53250 * 109.62640 * 239.40173 * 2 1 3 5 5 N 1.46472 * 109.85214 * 178.29465 * 4 2 1 6 6 C 1.38583 * 110.99745 * 197.76940 * 5 4 2 7 7 N 1.31220 * 126.46946 * 270.21966 * 6 5 4 8 8 N 1.28534 * 109.85489 * 179.82303 * 7 6 5 9 9 C 1.30292 * 110.05630 * 0.44928 * 8 7 6 10 10 C 1.50693 * 126.34857 * 179.76326 * 9 8 7 11 11 C 1.53001 * 109.47370 * 269.96283 * 10 9 8 12 12 C 1.53002 * 109.47206 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46852 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00190 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99831 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99863 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99913 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47549 * 90.00167 * 17 15 13 19 19 H 1.48504 * 109.47001 * 210.00289 * 17 15 13 20 20 H 1.48502 * 109.47085 * 329.99635 * 17 15 13 21 21 N 1.36447 * 126.47509 * 90.53075 * 6 5 4 22 22 C 1.46511 * 127.13546 * 0.02562 * 21 6 5 23 23 C 1.46468 * 112.55921 * 72.66300 * 5 4 2 24 24 C 1.53248 * 109.85651 * 287.33576 * 23 5 4 25 25 H 1.08995 * 109.63553 * 302.29776 * 24 23 5 26 26 C 1.53004 * 109.62935 * 181.90482 * 24 23 5 27 27 S 1.81899 * 109.62558 * 120.39346 * 2 1 3 28 28 H 1.09002 * 109.47001 * 299.60902 * 1 2 3 29 29 H 1.09004 * 109.46756 * 59.60349 * 1 2 3 30 30 H 1.08994 * 109.47530 * 179.60398 * 1 2 3 31 31 H 1.09001 * 109.40308 * 58.18609 * 4 2 1 32 32 H 1.08994 * 109.41122 * 298.40981 * 4 2 1 33 33 H 1.09005 * 109.47347 * 29.96019 * 10 9 8 34 34 H 1.08999 * 109.47136 * 149.95846 * 10 9 8 35 35 H 1.09008 * 109.46807 * 299.99632 * 11 10 9 36 36 H 1.08999 * 109.47348 * 59.99692 * 11 10 9 37 37 H 1.08998 * 109.46666 * 299.99336 * 12 11 10 38 38 H 1.08999 * 109.47382 * 59.99513 * 12 11 10 39 39 H 0.97006 * 119.99750 * 180.02562 * 16 15 13 40 40 H 1.08996 * 109.46701 * 95.61953 * 22 21 6 41 41 H 1.09005 * 109.46901 * 215.62088 * 22 21 6 42 42 H 1.08999 * 109.46762 * 335.62203 * 22 21 6 43 43 H 1.08996 * 109.40779 * 47.46069 * 23 5 4 44 44 H 1.09005 * 109.40660 * 167.22219 * 23 5 4 45 45 H 1.08997 * 109.46857 * 60.00167 * 26 24 23 46 46 H 1.08997 * 109.46995 * 180.02562 * 26 24 23 47 47 H 1.08996 * 109.47202 * 300.00288 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0448 -0.7347 -1.2425 5 7 3.5089 -0.7025 -1.2685 6 6 3.9896 -0.9917 -2.5357 7 7 4.2832 -2.1810 -3.0059 8 7 4.6988 -2.0809 -4.2181 9 6 4.7040 -0.8313 -4.5868 10 6 5.1283 -0.2985 -5.9311 11 6 6.6247 0.0191 -5.9047 12 6 7.0554 0.5607 -7.2693 13 6 8.5292 0.8740 -7.2430 14 1 9.1016 0.7035 -6.3432 15 6 9.1471 1.3774 -8.3682 16 7 8.4502 1.5845 -9.4641 17 14 10.9741 1.7651 -8.3358 18 1 11.7424 0.5652 -8.7541 19 1 11.2590 2.8852 -9.2684 20 1 11.3734 2.1536 -6.9592 21 7 4.2524 -0.0929 -3.5282 22 6 4.0858 1.3615 -3.4712 23 6 4.1083 -1.5858 -0.2656 24 6 3.9230 -0.9869 1.1328 25 1 4.3706 0.0062 1.1682 26 6 4.5921 -1.8896 2.1713 27 16 2.1410 -0.8668 1.4779 28 1 -0.3633 0.5078 0.8935 29 1 -0.3633 0.5200 -0.8865 30 1 -0.3634 -1.0276 -0.0071 31 1 1.6559 -0.2490 -2.1375 32 1 1.7058 -1.7703 -1.2173 33 1 4.9293 -1.0471 -6.6980 34 1 4.5681 0.6092 -6.1554 35 1 6.8238 0.7678 -5.1378 36 1 7.1849 -0.8886 -5.6803 37 1 6.8563 -0.1877 -8.0364 38 1 6.4951 1.4684 -7.4933 39 1 8.8850 1.9383 -10.2558 40 1 5.0367 1.8261 -3.2104 41 1 3.7569 1.7279 -4.4437 42 1 3.3399 1.6125 -2.7170 43 1 3.6260 -2.5623 -0.3083 44 1 5.1725 -1.6994 -0.4727 45 1 5.6564 -1.9706 1.9505 46 1 4.4583 -1.4616 3.1648 47 1 4.1378 -2.8799 2.1386 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262867393.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:18 Heat of formation + Delta-G solvation = 51.249305 kcal Electronic energy + Delta-G solvation = -25355.933636 eV Core-core repulsion = 21893.088434 eV Total energy + Delta-G solvation = -3462.845202 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.13794 -39.70377 -36.79709 -35.91106 -35.27398 -34.58812 -33.67526 -31.16178 -28.89330 -28.40359 -28.03168 -26.46656 -25.56055 -23.28186 -22.55129 -22.33400 -21.85335 -21.47556 -18.61557 -18.31474 -18.01255 -17.66193 -17.10697 -16.69564 -16.48330 -16.03592 -15.70717 -15.55264 -15.17504 -14.88483 -14.42246 -14.30009 -14.18406 -13.90788 -13.84701 -13.52818 -13.28505 -13.25601 -13.23005 -12.79769 -12.77673 -12.68792 -12.60740 -12.58130 -12.42828 -12.23471 -11.81907 -11.61523 -11.55094 -11.42068 -11.26326 -11.16139 -10.76052 -10.54210 -10.53302 -9.75479 -8.75593 -8.19710 -6.29536 0.58798 0.63871 1.10280 1.40265 1.41334 1.43746 1.51716 1.64446 2.38731 2.41727 3.14041 3.28700 3.46441 3.52276 3.72583 3.82984 3.87398 3.92304 4.00493 4.02755 4.14380 4.24379 4.34488 4.36175 4.36536 4.48935 4.50819 4.58860 4.62273 4.68978 4.76130 4.78172 4.88343 4.89833 4.93305 5.02946 5.07557 5.15672 5.16029 5.20109 5.38742 5.45856 5.51959 5.74581 5.85898 6.03981 6.26000 6.86382 7.39253 7.59199 8.91667 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.021965 B = 0.002368 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.463194 B =11821.801543 C =12273.242527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.035 4.035 3 H 0.107 0.893 4 C 0.068 3.932 5 N -0.463 5.463 6 C 0.345 3.655 7 N -0.345 5.345 8 N -0.327 5.327 9 C 0.202 3.798 10 C -0.024 4.024 11 C -0.084 4.084 12 C 0.028 3.972 13 C -0.544 4.544 14 H 0.054 0.946 15 C 0.004 3.996 16 N -0.929 5.929 17 Si 0.958 3.042 18 H -0.276 1.276 19 H -0.280 1.280 20 H -0.265 1.265 21 N -0.465 5.465 22 C 0.070 3.930 23 C 0.079 3.921 24 C -0.036 4.036 25 H 0.101 0.899 26 C -0.130 4.130 27 S -0.280 6.280 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.053 0.947 36 H 0.039 0.961 37 H -0.004 1.004 38 H 0.007 0.993 39 H 0.264 0.736 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.894 0.548 23.042 28.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.164 4.164 3 H 0.125 0.875 4 C -0.060 4.060 5 N -0.188 5.188 6 C -0.012 4.012 7 N -0.190 5.190 8 N -0.167 5.167 9 C -0.067 4.067 10 C -0.063 4.063 11 C -0.123 4.123 12 C -0.009 4.009 13 C -0.582 4.582 14 H 0.072 0.928 15 C -0.194 4.194 16 N -0.569 5.569 17 Si 0.783 3.217 18 H -0.201 1.201 19 H -0.205 1.205 20 H -0.190 1.190 21 N -0.157 5.157 22 C -0.071 4.071 23 C -0.049 4.049 24 C -0.166 4.166 25 H 0.119 0.881 26 C -0.189 4.189 27 S -0.053 6.053 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.015 0.985 38 H 0.026 0.974 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.125 0.875 42 H 0.131 0.869 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.174 -0.743 23.861 29.408 hybrid contribution 1.441 1.082 -1.553 2.379 sum -15.733 0.339 22.308 27.300 Atomic orbital electron populations 1.21610 0.89648 1.03452 1.04133 1.23238 1.00345 1.01331 0.91521 0.87486 1.22503 0.83114 1.00883 0.99507 1.57926 1.08736 1.54257 0.97860 1.22282 1.03662 0.85317 0.89971 1.74490 1.19623 1.20263 1.04577 1.73975 1.19734 1.17042 1.05915 1.25155 1.00331 0.87967 0.93250 1.20168 0.97007 1.02159 0.86992 1.21336 0.92701 0.99535 0.98734 1.18978 0.94888 0.95047 0.92025 1.21652 0.95957 1.42629 0.97920 0.92821 1.25874 1.02870 0.95494 0.95185 1.70068 1.37831 1.46175 1.02844 0.85547 0.79865 0.77954 0.78297 1.20148 1.20495 1.18965 1.46342 1.48070 1.10463 1.10828 1.22406 1.05162 0.73090 1.06409 1.22275 1.00164 0.93637 0.88844 1.23213 0.93617 1.03934 0.95808 0.88072 1.21597 1.00853 0.98914 0.97508 1.87139 1.08355 1.78071 1.31753 0.90552 0.89249 0.91906 0.88920 0.92864 0.88776 0.87726 0.92869 0.94190 0.98511 0.97415 0.92721 0.89402 0.87541 0.86850 0.92439 0.90237 0.89973 0.90392 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 9.23 71.98 0.66 -0.54 16 2 C -0.04 -0.45 3.34 30.68 0.10 -0.34 16 3 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 4 C 0.07 1.13 4.66 86.47 0.40 1.53 16 5 N -0.46 -9.47 4.37 -707.25 -3.09 -12.56 16 6 C 0.35 9.43 6.50 260.11 1.69 11.12 16 7 N -0.35 -11.98 11.75 -58.00 -0.68 -12.66 16 8 N -0.33 -12.31 12.18 -49.54 -0.60 -12.91 16 9 C 0.20 6.49 7.32 137.64 1.01 7.50 16 10 C -0.02 -0.75 5.59 29.85 0.17 -0.59 16 11 C -0.08 -3.34 5.14 30.60 0.16 -3.19 16 12 C 0.03 1.39 4.97 29.85 0.15 1.54 16 13 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 14 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 15 C 0.00 0.22 5.46 84.65 0.46 0.68 16 16 N -0.93 -55.12 13.29 21.45 0.28 -54.83 16 17 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 N -0.46 -12.02 3.21 -538.17 -1.73 -13.75 16 22 C 0.07 1.16 11.01 127.77 1.41 2.57 16 23 C 0.08 1.59 4.31 86.47 0.37 1.96 16 24 C -0.04 -0.56 3.33 30.68 0.10 -0.46 16 25 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 26 C -0.13 -1.63 9.24 71.98 0.67 -0.97 16 27 S -0.28 -4.49 21.15 -56.49 -1.20 -5.68 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 1.40 7.93 -2.39 -0.02 1.39 16 32 H 0.05 1.04 7.91 -2.39 -0.02 1.02 16 33 H 0.09 3.08 8.14 -2.38 -0.02 3.06 16 34 H 0.10 2.77 7.40 -2.39 -0.02 2.75 16 35 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 40 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.11 1.47 7.43 -2.38 -0.02 1.45 16 42 H 0.11 1.31 8.10 -2.39 -0.02 1.29 16 43 H 0.06 1.29 7.91 -2.39 -0.02 1.27 16 44 H 0.08 1.80 7.93 -2.38 -0.02 1.78 16 45 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -70.42 390.67 3.52 -66.90 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.93 Total: 9.02 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 7.58 Total: -9.35 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -5.82 Total: -106.71 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -4.49 SS G_CDS: -1.20 Total: -5.68 kcal Total: -70.42 3.52 -66.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262867393.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.148 kcal (2) G-P(sol) polarization free energy of solvation -70.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds