Wall clock time and date at job start Tue Mar 31 2020 15:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47231 * 2 1 4 4 C 1.36730 * 127.13489 * 95.44935 * 3 2 1 5 5 C 1.50704 * 126.34987 * 359.96352 * 4 3 2 6 6 C 1.52998 * 109.47173 * 270.29055 * 5 4 3 7 7 C 1.53007 * 109.46827 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.46696 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00407 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99515 * 180.02562 * 8 7 6 11 11 N 1.31510 * 120.00032 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99474 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47507 * 89.99837 * 12 10 8 14 14 H 1.48506 * 109.46753 * 209.99470 * 12 10 8 15 15 H 1.48496 * 109.47486 * 329.99463 * 12 10 8 16 16 N 1.30296 * 107.30329 * 180.22950 * 4 3 2 17 17 N 1.28520 * 110.05517 * 359.77139 * 16 4 3 18 18 C 1.31222 * 109.85725 * 0.02562 * 17 16 4 19 19 N 1.38585 * 126.46904 * 179.97438 * 18 17 16 20 20 C 1.46464 * 110.99578 * 104.63136 * 19 18 17 21 21 C 1.53254 * 109.85652 * 162.23253 * 20 19 18 22 22 S 1.81899 * 108.50432 * 62.00407 * 21 20 19 23 23 C 1.81899 * 101.91418 * 308.69167 * 22 21 20 24 24 H 1.08992 * 109.62960 * 291.60373 * 23 22 21 25 25 C 1.53001 * 109.62777 * 171.01228 * 23 22 21 26 26 C 1.46467 * 111.00160 * 338.65122 * 19 18 17 27 27 H 1.09002 * 109.46870 * 185.02973 * 1 2 3 28 28 H 1.08999 * 109.46663 * 305.02349 * 1 2 3 29 29 H 1.08997 * 109.47284 * 65.02500 * 1 2 3 30 30 H 1.09002 * 109.47307 * 240.00444 * 2 1 3 31 31 H 1.09003 * 109.47530 * 120.00403 * 2 1 3 32 32 H 1.09005 * 109.46896 * 30.29201 * 5 4 3 33 33 H 1.09002 * 109.47199 * 150.28590 * 5 4 3 34 34 H 1.08997 * 109.46927 * 299.99397 * 6 5 4 35 35 H 1.08993 * 109.47493 * 59.99908 * 6 5 4 36 36 H 1.08997 * 109.46992 * 299.99501 * 7 6 5 37 37 H 1.08994 * 109.47058 * 60.00329 * 7 6 5 38 38 H 0.97004 * 119.99642 * 179.97438 * 11 10 8 39 39 H 1.09001 * 109.40964 * 282.34881 * 20 19 18 40 40 H 1.08992 * 109.41009 * 42.11698 * 20 19 18 41 41 H 1.09010 * 109.62881 * 181.70390 * 21 20 19 42 42 H 1.08995 * 109.63471 * 302.29592 * 21 20 19 43 43 H 1.09001 * 109.47243 * 300.98575 * 25 23 22 44 44 H 1.09000 * 109.47455 * 60.99077 * 25 23 22 45 45 H 1.09001 * 109.46607 * 180.99045 * 25 23 22 46 46 H 1.09006 * 109.40824 * 317.88164 * 26 19 18 47 47 H 1.08998 * 109.40951 * 77.72682 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3911 2.1249 1.0851 5 6 2.3769 1.6756 2.5235 6 6 1.0160 1.9963 3.1447 7 6 1.0015 1.5395 4.6049 8 6 -0.3393 1.8548 5.2165 9 1 -1.1043 2.3336 4.6233 10 6 -0.5889 1.5331 6.5338 11 7 0.3429 0.9505 7.2563 12 14 -2.2505 1.9246 7.2921 13 1 -3.1678 0.7734 7.0961 14 1 -2.0831 2.1824 8.7450 15 1 -2.8215 3.1294 6.6382 16 7 2.7554 3.2962 0.6455 17 7 2.6436 3.3410 -0.6340 18 6 2.1978 2.1915 -1.0830 19 7 1.9511 1.8640 -2.4069 20 6 3.0009 0.9903 -2.9357 21 6 2.5064 0.2937 -4.2081 22 16 2.1450 1.5643 -5.4586 23 6 1.0677 2.7032 -4.5362 24 1 0.1149 2.2172 -4.3267 25 6 0.8327 3.9700 -5.3614 26 6 1.7603 3.0680 -3.2187 27 1 -0.3633 -1.0237 0.0901 28 1 -0.3632 0.5898 0.8416 29 1 -0.3634 0.4339 -0.9315 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.5535 0.6009 2.5702 33 1 3.1598 2.1966 3.0747 34 1 0.8396 3.0709 3.0981 35 1 0.2332 1.4753 2.5936 36 1 1.1777 0.4648 4.6511 37 1 1.7843 2.0602 5.1563 38 1 0.1674 0.7245 8.1831 39 1 3.8841 1.5851 -3.1684 40 1 3.2579 0.2396 -2.1885 41 1 3.2792 -0.3783 -4.5816 42 1 1.6008 -0.2715 -3.9879 43 1 1.7892 4.4470 -5.5752 44 1 0.3401 3.7076 -6.2977 45 1 0.2014 4.6580 -4.7990 46 1 1.1436 3.7805 -2.6706 47 1 2.7297 3.5179 -3.4329 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263018650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:46 Heat of formation + Delta-G solvation = 51.873778 kcal Electronic energy + Delta-G solvation = -25733.530260 eV Core-core repulsion = 22270.712137 eV Total energy + Delta-G solvation = -3462.818123 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.13856 -39.61664 -37.07347 -36.32721 -34.77530 -34.30292 -32.56542 -31.64708 -30.60983 -28.52563 -27.42006 -25.70223 -25.08414 -23.73886 -23.11868 -22.37815 -21.78059 -21.25320 -18.66451 -18.37248 -17.95799 -17.53431 -16.99860 -16.65485 -16.42385 -15.87595 -15.59971 -15.50963 -15.15214 -14.98316 -14.83614 -14.29197 -14.06389 -14.01135 -13.80498 -13.75386 -13.41793 -13.16678 -13.07646 -12.95200 -12.72415 -12.61051 -12.52738 -12.43761 -12.34393 -12.29883 -11.83590 -11.73206 -11.51345 -11.41609 -11.25633 -11.18204 -10.76623 -10.69151 -10.53627 -9.55178 -8.75543 -8.19515 -6.29281 0.62919 0.68589 1.11579 1.39756 1.41195 1.45185 1.51880 1.68954 2.39153 2.41721 3.14195 3.29478 3.50675 3.55651 3.61992 3.81246 3.89710 3.96306 3.99500 4.01286 4.10468 4.20763 4.30452 4.33150 4.34643 4.47474 4.53156 4.54650 4.59194 4.69823 4.76247 4.77967 4.82503 4.91418 4.95240 5.04968 5.11093 5.11335 5.18642 5.27635 5.39105 5.49962 5.52808 5.75014 5.86302 6.06991 6.26273 6.86469 7.39461 7.64542 8.91854 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.023247 B = 0.002482 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.163459 B =11279.710494 C =11379.640898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.100 3.900 3 N -0.465 5.465 4 C 0.200 3.800 5 C -0.024 4.024 6 C -0.084 4.084 7 C 0.029 3.971 8 C -0.543 4.543 9 H 0.053 0.947 10 C 0.005 3.995 11 N -0.929 5.929 12 Si 0.958 3.042 13 H -0.270 1.270 14 H -0.282 1.282 15 H -0.269 1.269 16 N -0.327 5.327 17 N -0.352 5.352 18 C 0.353 3.647 19 N -0.458 5.458 20 C 0.058 3.942 21 C -0.064 4.064 22 S -0.285 6.285 23 C -0.035 4.035 24 H 0.100 0.900 25 C -0.131 4.131 26 C 0.080 3.920 27 H 0.102 0.898 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.119 0.881 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.037 0.963 35 H 0.054 0.946 36 H 0.007 0.993 37 H -0.004 1.004 38 H 0.264 0.736 39 H 0.056 0.944 40 H 0.098 0.902 41 H 0.136 0.864 42 H 0.105 0.895 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.110 -5.174 -26.950 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.021 4.021 3 N -0.158 5.158 4 C -0.069 4.069 5 C -0.064 4.064 6 C -0.123 4.123 7 C -0.008 4.008 8 C -0.581 4.581 9 H 0.071 0.929 10 C -0.194 4.194 11 N -0.569 5.569 12 Si 0.783 3.217 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.194 1.194 16 N -0.166 5.166 17 N -0.196 5.196 18 C -0.004 4.004 19 N -0.183 5.183 20 C -0.070 4.070 21 C -0.213 4.213 22 S -0.059 6.059 23 C -0.164 4.164 24 H 0.118 0.882 25 C -0.189 4.189 26 C -0.048 4.048 27 H 0.121 0.879 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.137 0.863 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.111 0.889 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.025 0.975 37 H 0.014 0.986 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.116 0.884 41 H 0.154 0.846 42 H 0.124 0.876 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.571 -4.057 -27.919 28.438 hybrid contribution -0.942 -0.551 2.117 2.381 sum 2.630 -4.608 -25.803 26.343 Atomic orbital electron populations 1.22103 0.93336 1.04442 1.02189 1.22251 0.96480 0.76929 1.06430 1.46484 1.49363 1.15032 1.04966 1.25084 1.00567 0.88709 0.92536 1.20152 0.99915 1.02697 0.83601 1.21365 0.94534 0.99755 0.96653 1.18967 0.95383 0.95501 0.90967 1.21639 1.00346 1.39278 0.96819 0.92875 1.25862 1.00659 0.94991 0.97845 1.70065 1.35150 1.42783 1.08890 0.85557 0.79786 0.78878 0.77514 1.19502 1.20741 1.19362 1.73945 1.21312 1.18026 1.03314 1.74477 1.20879 1.20279 1.04002 1.22380 1.01010 0.88522 0.88494 1.57954 1.44817 1.20131 0.95416 1.22478 0.91235 0.95886 0.97447 1.23538 1.06575 0.97785 0.93353 1.87158 1.65587 1.28788 1.24358 1.23228 0.99674 0.98918 0.94620 0.88153 1.21600 1.03150 0.94280 0.99900 1.22245 1.01222 0.89014 0.92355 0.87909 0.93936 0.91902 0.86252 0.87198 0.87924 0.88892 0.94362 0.92715 0.97463 0.98597 0.92728 0.92595 0.88429 0.84574 0.87641 0.91606 0.90431 0.90011 0.90038 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 10.24 71.98 0.74 -2.23 16 2 C 0.10 1.72 6.73 86.38 0.58 2.31 16 3 N -0.46 -11.95 2.81 -514.84 -1.45 -13.40 16 4 C 0.20 6.48 7.32 137.64 1.01 7.49 16 5 C -0.02 -0.78 5.57 29.85 0.17 -0.61 16 6 C -0.08 -3.38 5.14 30.60 0.16 -3.22 16 7 C 0.03 1.46 4.97 29.85 0.15 1.60 16 8 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 9 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 10 C 0.00 0.26 5.46 84.66 0.46 0.72 16 11 N -0.93 -55.12 13.29 21.45 0.28 -54.83 16 12 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 N -0.33 -12.37 12.18 -49.54 -0.60 -12.98 16 17 N -0.35 -12.18 11.39 -58.01 -0.66 -12.84 16 18 C 0.35 9.54 6.68 260.11 1.74 11.28 16 19 N -0.46 -9.05 4.41 -707.27 -3.12 -12.17 16 20 C 0.06 0.84 5.22 86.47 0.45 1.30 16 21 C -0.06 -0.68 6.69 72.07 0.48 -0.20 16 22 S -0.29 -4.31 21.77 -56.49 -1.23 -5.54 16 23 C -0.04 -0.52 3.34 30.68 0.10 -0.42 16 24 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 25 C -0.13 -1.60 9.23 71.98 0.66 -0.94 16 26 C 0.08 1.57 4.21 86.47 0.36 1.93 16 27 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.04 1.04 6.83 -2.39 -0.02 1.03 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.12 1.34 6.67 -2.39 -0.02 1.33 16 31 H 0.11 1.71 7.11 -2.39 -0.02 1.70 16 32 H 0.10 2.78 7.19 -2.38 -0.02 2.76 16 33 H 0.09 3.09 8.14 -2.39 -0.02 3.08 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.05 2.10 6.83 -2.39 -0.02 2.08 16 36 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 39 H 0.06 0.96 7.91 -2.39 -0.02 0.94 16 40 H 0.10 1.22 6.56 -2.39 -0.02 1.21 16 41 H 0.14 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.08 1.86 7.78 -2.38 -0.02 1.84 16 47 H 0.06 1.25 7.91 -2.39 -0.02 1.23 16 Total: -1.00 -70.77 385.16 3.49 -67.28 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.94 Total: 9.79 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 7.30 Total: -11.16 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -5.54 Total: -106.22 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -4.31 SS G_CDS: -1.23 Total: -5.54 kcal Total: -70.77 3.49 -67.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263018650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.152 kcal (2) G-P(sol) polarization free energy of solvation -70.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds