Wall clock time and date at job start Tue Mar 31 2020 14:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46897 * 2 1 4 4 C 1.53000 * 109.46932 * 119.99900 * 2 1 3 5 5 C 1.53003 * 109.46910 * 184.99792 * 4 2 1 6 6 H 1.08998 * 110.80412 * 305.70757 * 5 4 2 7 7 C 1.54811 * 110.90762 * 182.07586 * 5 4 2 8 8 C 1.54101 * 104.18466 * 220.88979 * 7 5 4 9 9 O 1.43750 * 107.29618 * 357.96691 * 8 7 5 10 10 C 1.44385 * 106.97303 * 26.51683 * 9 8 7 11 11 N 1.46494 * 109.46787 * 240.00165 * 2 1 3 12 12 C 1.34783 * 120.00163 * 85.00054 * 11 2 1 13 13 O 1.21350 * 119.99888 * 359.97438 * 12 11 2 14 14 C 1.49451 * 120.00049 * 179.97438 * 12 11 2 15 15 O 1.21351 * 119.99938 * 355.01254 * 14 12 11 16 16 N 1.34770 * 120.00062 * 175.00676 * 14 12 11 17 17 C 1.46493 * 120.00218 * 185.78154 * 16 14 12 18 18 C 1.53003 * 109.47135 * 183.69816 * 17 16 14 19 19 C 1.50701 * 115.54982 * 306.41165 * 18 17 16 20 20 H 1.07993 * 119.99954 * 145.11203 * 19 18 17 21 21 C 1.37884 * 119.99939 * 325.11628 * 19 18 17 22 22 N 1.31513 * 119.99930 * 349.44054 * 21 19 18 23 23 Si 1.86797 * 119.99983 * 169.44312 * 21 19 18 24 24 H 1.48501 * 109.47183 * 59.99596 * 23 21 19 25 25 H 1.48500 * 109.47117 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46942 * 300.00007 * 23 21 19 27 27 C 1.52999 * 117.49833 * 160.74678 * 18 17 16 28 28 C 1.52994 * 117.50294 * 92.08583 * 18 17 16 29 29 H 1.08997 * 109.47096 * 59.99672 * 1 2 3 30 30 H 1.09004 * 109.46897 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47253 * 299.99947 * 1 2 3 32 32 H 1.09001 * 109.47103 * 65.00837 * 4 2 1 33 33 H 1.08991 * 109.47438 * 304.99940 * 4 2 1 34 34 H 1.09002 * 110.48640 * 339.56225 * 7 5 4 35 35 H 1.08995 * 110.48836 * 102.21206 * 7 5 4 36 36 H 1.08995 * 109.88127 * 117.39534 * 8 7 5 37 37 H 1.09003 * 109.87768 * 238.39678 * 8 7 5 38 38 H 1.08996 * 110.61362 * 201.43485 * 10 9 8 39 39 H 1.08993 * 110.61556 * 78.43724 * 10 9 8 40 40 H 0.97002 * 120.00274 * 264.99515 * 11 2 1 41 41 H 0.97005 * 119.99825 * 5.78590 * 16 14 12 42 42 H 1.09004 * 109.47030 * 303.69108 * 17 16 14 43 43 H 1.08993 * 109.47354 * 63.69240 * 17 16 14 44 44 H 0.96995 * 119.99972 * 185.03495 * 22 21 19 45 45 H 1.08998 * 117.50194 * 359.97438 * 27 18 17 46 46 H 1.09007 * 117.50124 * 145.01840 * 27 18 17 47 47 H 1.09000 * 117.50513 * 214.97828 * 28 18 17 48 48 H 1.09006 * 117.49575 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6133 1.3137 6 1 4.0179 -0.9756 0.3909 7 6 4.1215 -1.3774 2.5396 8 6 5.2269 -0.4551 3.0894 9 8 5.3061 0.6843 2.2167 10 6 4.0049 0.8428 1.6112 11 7 2.0183 -0.6906 -1.1962 12 6 2.1470 -0.0182 -2.3572 13 8 1.8580 1.1591 -2.4118 14 6 2.6456 -0.7226 -3.5773 15 8 3.0201 -1.8744 -3.5025 16 7 2.6793 -0.0786 -4.7607 17 6 3.0470 -0.8039 -5.9792 18 6 3.0973 0.1709 -7.1575 19 6 1.8557 0.9980 -7.3702 20 1 1.9382 2.0137 -7.7276 21 6 0.6143 0.4579 -7.1086 22 7 0.4938 -0.8308 -6.8754 23 14 -0.8962 1.5566 -7.0853 24 1 -1.0586 2.2030 -8.4123 25 1 -2.0984 0.7389 -6.7830 26 1 -0.7324 2.6012 -6.0426 27 6 3.8793 -0.2618 -8.3993 28 6 4.4438 0.8226 -7.4782 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7518 -1.7715 1.2055 33 1 1.6054 -0.2618 2.1369 34 1 3.3400 -1.5229 3.2855 35 1 4.5413 -2.3356 2.2336 36 1 4.9720 -0.1319 4.0987 37 1 6.1799 -0.9840 3.0994 38 1 4.0785 1.4178 0.6883 39 1 3.3133 1.3182 2.3067 40 1 2.2490 -1.6317 -1.1527 41 1 2.4601 0.8653 -4.8057 42 1 4.0261 -1.2642 -5.8465 43 1 2.3059 -1.5777 -6.1791 44 1 -0.3862 -1.2232 -6.7638 45 1 4.3583 -1.2406 -8.3768 46 1 3.4959 0.0522 -9.3702 47 1 4.4317 1.8495 -7.8434 48 1 5.2938 0.5573 -6.8495 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323215491.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:52 Heat of formation + Delta-G solvation = -104.395091 kcal Electronic energy + Delta-G solvation = -28312.800578 eV Core-core repulsion = 24368.160506 eV Total energy + Delta-G solvation = -3944.640072 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.34860 -39.60751 -38.16028 -36.68620 -36.34809 -33.46917 -32.87220 -32.20211 -31.03449 -29.57668 -26.79960 -26.32406 -25.55489 -23.77794 -22.93972 -21.29554 -21.12871 -20.50180 -19.83492 -19.37969 -18.00604 -16.77410 -16.62402 -16.26705 -16.01323 -15.52014 -15.39340 -15.04981 -14.76409 -14.53774 -14.20518 -13.84690 -13.73027 -13.54843 -13.18061 -13.07376 -12.92481 -12.64651 -12.33234 -12.23856 -11.82476 -11.79364 -11.59832 -11.53334 -11.17663 -11.04415 -10.98437 -10.95847 -10.84145 -10.72922 -10.53070 -10.30088 -9.92906 -9.65369 -9.20706 -9.13041 -8.96197 -8.86774 -8.33272 -8.01551 -6.11541 -4.20762 1.99005 2.84626 3.24811 3.30712 3.34729 3.65599 3.82548 4.15008 4.20778 4.29940 4.40925 4.53349 4.71640 4.80005 4.88457 4.90249 5.00974 5.14732 5.23174 5.29145 5.36654 5.42559 5.47032 5.47989 5.54298 5.56266 5.57590 5.71354 5.88540 5.94582 5.96143 6.11810 6.25439 6.43615 6.48962 6.55747 6.60884 6.65312 6.83352 7.00207 7.20243 7.27176 7.42938 7.47861 7.85480 8.04366 8.26997 8.37745 8.76744 8.80828 9.40702 10.85819 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.003180 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.933107 B = 8802.051334 C = 9736.012332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.138 3.862 3 H 0.091 0.909 4 C -0.116 4.116 5 C -0.125 4.125 6 H 0.092 0.908 7 C -0.152 4.152 8 C 0.046 3.954 9 O -0.379 6.379 10 C 0.050 3.950 11 N -0.704 5.704 12 C 0.510 3.490 13 O -0.520 6.520 14 C 0.493 3.507 15 O -0.549 6.549 16 N -0.650 5.650 17 C 0.158 3.842 18 C 0.036 3.964 19 C -0.500 4.500 20 H 0.063 0.937 21 C 0.076 3.924 22 N -0.872 5.872 23 Si 0.892 3.108 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.272 1.272 27 C -0.193 4.193 28 C -0.211 4.211 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.410 0.590 41 H 0.413 0.587 42 H 0.034 0.966 43 H 0.115 0.885 44 H 0.264 0.736 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.864 -1.634 18.862 19.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.034 3.966 3 H 0.109 0.891 4 C -0.154 4.154 5 C -0.144 4.144 6 H 0.110 0.890 7 C -0.190 4.190 8 C -0.031 4.031 9 O -0.297 6.297 10 C -0.027 4.027 11 N -0.359 5.359 12 C 0.291 3.709 13 O -0.395 6.395 14 C 0.272 3.728 15 O -0.429 6.429 16 N -0.298 5.298 17 C 0.036 3.964 18 C 0.035 3.965 19 C -0.537 4.537 20 H 0.081 0.919 21 C -0.129 4.129 22 N -0.507 5.507 23 Si 0.719 3.281 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.197 1.197 27 C -0.232 4.232 28 C -0.248 4.248 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.246 0.754 41 H 0.249 0.751 42 H 0.052 0.948 43 H 0.132 0.868 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.940 -1.583 18.912 19.204 hybrid contribution -1.068 0.329 -0.098 1.122 sum 1.872 -1.253 18.813 18.948 Atomic orbital electron populations 1.22200 0.94861 1.02483 1.02875 1.21053 0.94355 0.97698 0.83484 0.89060 1.21888 0.94096 1.01836 0.97553 1.22803 0.96055 0.96041 0.99467 0.88999 1.23004 0.98576 0.99755 0.97648 1.23139 0.99440 0.86901 0.93631 1.88897 1.31481 1.48251 1.61109 1.23684 0.84643 0.96256 0.98094 1.45838 1.66466 1.14812 1.08766 1.20610 0.78372 0.87052 0.84853 1.90740 1.48277 1.15644 1.84823 1.19803 0.81322 0.86841 0.84791 1.90677 1.49160 1.17283 1.85809 1.45709 1.63322 1.14761 1.05999 1.21209 0.98676 0.95627 0.80893 1.19154 0.89839 0.95853 0.91657 1.20479 0.88943 0.98708 1.45559 0.91855 1.24968 0.98999 0.94956 0.93941 1.69813 1.23813 1.10168 1.46941 0.86645 0.81872 0.80778 0.78834 1.20170 1.21215 1.19674 1.22926 1.06644 0.96742 0.96869 1.22979 0.99147 0.97196 1.05526 0.91576 0.92216 0.91570 0.90514 0.89883 0.90502 0.90301 0.92574 0.89987 0.88758 0.92016 0.75391 0.75053 0.94781 0.86789 0.92545 0.91434 0.90078 0.90455 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 9.48 37.16 0.35 -1.36 16 2 C 0.14 1.46 2.51 -67.93 -0.17 1.29 16 3 H 0.09 1.06 6.81 -51.93 -0.35 0.71 16 4 C -0.12 -0.86 4.15 -26.73 -0.11 -0.97 16 5 C -0.12 -1.07 3.04 -88.61 -0.27 -1.34 16 6 H 0.09 0.95 7.68 -51.93 -0.40 0.55 16 7 C -0.15 -1.08 6.60 -25.20 -0.17 -1.24 16 8 C 0.05 0.38 7.70 37.73 0.29 0.67 16 9 O -0.38 -4.39 11.52 -35.23 -0.41 -4.80 16 10 C 0.05 0.49 6.45 38.21 0.25 0.73 16 11 N -0.70 -9.38 4.48 -54.23 -0.24 -9.62 16 12 C 0.51 9.03 7.85 -11.58 -0.09 8.94 16 13 O -0.52 -10.24 16.15 5.50 0.09 -10.15 16 14 C 0.49 10.12 7.88 -11.59 -0.09 10.03 16 15 O -0.55 -11.91 16.48 5.50 0.09 -11.82 16 16 N -0.65 -14.28 5.27 -60.74 -0.32 -14.60 16 17 C 0.16 3.68 4.75 -4.04 -0.02 3.66 16 18 C 0.04 0.84 2.00 -155.66 -0.31 0.53 16 19 C -0.50 -12.81 8.27 -34.44 -0.28 -13.09 16 20 H 0.06 1.63 7.84 -52.49 -0.41 1.22 16 21 C 0.08 1.96 5.13 -17.82 -0.09 1.87 16 22 N -0.87 -23.11 10.75 55.43 0.60 -22.51 16 23 Si 0.89 20.48 29.55 -169.99 -5.02 15.46 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 C -0.19 -4.19 9.96 -26.70 -0.27 -4.46 16 28 C -0.21 -4.41 9.92 -26.70 -0.26 -4.67 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.49 8.05 -51.93 -0.42 0.07 16 34 H 0.08 0.43 7.86 -51.93 -0.41 0.03 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.02 8.00 -51.93 -0.42 0.60 16 39 H 0.06 0.51 7.98 -51.93 -0.41 0.10 16 40 H 0.41 5.05 8.08 -40.82 -0.33 4.72 16 41 H 0.41 9.27 7.41 -40.82 -0.30 8.97 16 42 H 0.03 0.77 8.06 -51.93 -0.42 0.35 16 43 H 0.11 2.97 6.04 -51.93 -0.31 2.66 16 44 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 45 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 47 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 48 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 392.90 15.07 5.92 5.92 Total: -1.00 -29.12 392.90 -8.51 -37.64 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -7.97 Total: 13.92 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -1.25 Total: 0.58 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.03 Total: -46.74 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.23 Total: -26.77 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.12 -8.51 -37.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323215491.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.759 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds