Wall clock time and date at job start Tue Mar 31 2020 14:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46897 * 2 1 4 4 C 1.53000 * 109.46932 * 119.99900 * 2 1 3 5 5 C 1.53003 * 109.46910 * 184.99792 * 4 2 1 6 6 H 1.08998 * 110.80412 * 305.70757 * 5 4 2 7 7 C 1.54811 * 110.90762 * 182.07586 * 5 4 2 8 8 C 1.54101 * 104.18466 * 220.88979 * 7 5 4 9 9 O 1.43750 * 107.29618 * 357.96691 * 8 7 5 10 10 C 1.44385 * 106.97303 * 26.51683 * 9 8 7 11 11 N 1.46494 * 109.46787 * 240.00165 * 2 1 3 12 12 C 1.34783 * 120.00163 * 85.00054 * 11 2 1 13 13 O 1.21350 * 119.99888 * 359.97438 * 12 11 2 14 14 C 1.49451 * 120.00049 * 179.97438 * 12 11 2 15 15 O 1.21351 * 119.99938 * 355.01254 * 14 12 11 16 16 N 1.34770 * 120.00062 * 175.00676 * 14 12 11 17 17 C 1.46493 * 120.00218 * 185.78154 * 16 14 12 18 18 C 1.53003 * 109.47135 * 183.69816 * 17 16 14 19 19 C 1.50701 * 115.54982 * 306.41165 * 18 17 16 20 20 H 1.07993 * 119.99954 * 145.11203 * 19 18 17 21 21 C 1.37884 * 119.99939 * 325.11628 * 19 18 17 22 22 N 1.31513 * 119.99930 * 349.44054 * 21 19 18 23 23 Si 1.86797 * 119.99983 * 169.44312 * 21 19 18 24 24 H 1.48501 * 109.47183 * 59.99596 * 23 21 19 25 25 H 1.48500 * 109.47117 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46942 * 300.00007 * 23 21 19 27 27 C 1.52999 * 117.49833 * 160.74678 * 18 17 16 28 28 C 1.52994 * 117.50294 * 92.08583 * 18 17 16 29 29 H 1.08997 * 109.47096 * 59.99672 * 1 2 3 30 30 H 1.09004 * 109.46897 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47253 * 299.99947 * 1 2 3 32 32 H 1.09001 * 109.47103 * 65.00837 * 4 2 1 33 33 H 1.08991 * 109.47438 * 304.99940 * 4 2 1 34 34 H 1.09002 * 110.48640 * 339.56225 * 7 5 4 35 35 H 1.08995 * 110.48836 * 102.21206 * 7 5 4 36 36 H 1.08995 * 109.88127 * 117.39534 * 8 7 5 37 37 H 1.09003 * 109.87768 * 238.39678 * 8 7 5 38 38 H 1.08996 * 110.61362 * 201.43485 * 10 9 8 39 39 H 1.08993 * 110.61556 * 78.43724 * 10 9 8 40 40 H 0.97002 * 120.00274 * 264.99515 * 11 2 1 41 41 H 0.97005 * 119.99825 * 5.78590 * 16 14 12 42 42 H 1.09004 * 109.47030 * 303.69108 * 17 16 14 43 43 H 1.08993 * 109.47354 * 63.69240 * 17 16 14 44 44 H 0.96995 * 119.99972 * 185.03495 * 22 21 19 45 45 H 1.08998 * 117.50194 * 359.97438 * 27 18 17 46 46 H 1.09007 * 117.50124 * 145.01840 * 27 18 17 47 47 H 1.09000 * 117.50513 * 214.97828 * 28 18 17 48 48 H 1.09006 * 117.49575 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6133 1.3137 6 1 4.0179 -0.9756 0.3909 7 6 4.1215 -1.3774 2.5396 8 6 5.2269 -0.4551 3.0894 9 8 5.3061 0.6843 2.2167 10 6 4.0049 0.8428 1.6112 11 7 2.0183 -0.6906 -1.1962 12 6 2.1470 -0.0182 -2.3572 13 8 1.8580 1.1591 -2.4118 14 6 2.6456 -0.7226 -3.5773 15 8 3.0201 -1.8744 -3.5025 16 7 2.6793 -0.0786 -4.7607 17 6 3.0470 -0.8039 -5.9792 18 6 3.0973 0.1709 -7.1575 19 6 1.8557 0.9980 -7.3702 20 1 1.9382 2.0137 -7.7276 21 6 0.6143 0.4579 -7.1086 22 7 0.4938 -0.8308 -6.8754 23 14 -0.8962 1.5566 -7.0853 24 1 -1.0586 2.2030 -8.4123 25 1 -2.0984 0.7389 -6.7830 26 1 -0.7324 2.6012 -6.0426 27 6 3.8793 -0.2618 -8.3993 28 6 4.4438 0.8226 -7.4782 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7518 -1.7715 1.2055 33 1 1.6054 -0.2618 2.1369 34 1 3.3400 -1.5229 3.2855 35 1 4.5413 -2.3356 2.2336 36 1 4.9720 -0.1319 4.0987 37 1 6.1799 -0.9840 3.0994 38 1 4.0785 1.4178 0.6883 39 1 3.3133 1.3182 2.3067 40 1 2.2490 -1.6317 -1.1527 41 1 2.4601 0.8653 -4.8057 42 1 4.0261 -1.2642 -5.8465 43 1 2.3059 -1.5777 -6.1791 44 1 -0.3862 -1.2232 -6.7638 45 1 4.3583 -1.2406 -8.3768 46 1 3.4959 0.0522 -9.3702 47 1 4.4317 1.8495 -7.8434 48 1 5.2938 0.5573 -6.8495 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323215491.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:51 Heat of formation + Delta-G solvation = -123.678063 kcal Electronic energy + Delta-G solvation = -28313.636751 eV Core-core repulsion = 24368.160506 eV Total energy + Delta-G solvation = -3945.476244 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.67964 -40.50608 -39.65260 -38.44723 -37.43020 -34.98594 -34.18289 -33.93267 -31.98061 -30.26644 -28.50412 -27.50292 -27.05954 -25.14630 -23.72655 -22.96492 -22.02870 -21.31278 -21.27670 -21.18062 -19.57310 -18.08554 -17.93160 -17.46619 -16.96570 -16.81300 -16.71900 -16.58686 -16.14277 -15.95346 -15.42146 -15.24198 -14.94204 -14.75972 -14.38089 -14.29885 -14.03073 -13.78972 -13.62246 -13.42710 -13.20056 -12.89408 -12.86265 -12.73263 -12.64412 -12.45385 -12.34228 -12.33155 -12.06595 -11.83654 -11.62749 -11.44974 -11.40550 -11.10733 -10.70476 -10.63911 -10.57211 -10.27444 -10.16482 -9.82852 -8.07259 -6.21179 0.46489 1.39802 1.44647 1.48696 1.49363 2.27117 2.38945 2.78562 2.98046 3.04796 3.47902 3.56463 3.68495 3.74705 3.87231 4.01640 4.16409 4.19282 4.21136 4.30928 4.42802 4.48976 4.59493 4.68935 4.70062 4.74464 4.74896 4.81480 4.83943 4.88146 4.95577 4.96053 5.04431 5.06345 5.15344 5.25399 5.26343 5.30240 5.38939 5.46780 5.55817 5.58271 5.87843 5.93360 6.07675 6.34234 6.54861 6.79030 6.87894 7.11663 7.41515 8.87702 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.003180 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.933107 B = 8802.051334 C = 9736.012332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.133 3.867 3 H 0.080 0.920 4 C -0.103 4.103 5 C -0.124 4.124 6 H 0.069 0.931 7 C -0.144 4.144 8 C 0.037 3.963 9 O -0.411 6.411 10 C 0.046 3.954 11 N -0.683 5.683 12 C 0.512 3.488 13 O -0.545 6.545 14 C 0.489 3.511 15 O -0.563 6.563 16 N -0.656 5.656 17 C 0.170 3.830 18 C 0.006 3.994 19 C -0.510 4.510 20 H 0.057 0.943 21 C 0.041 3.959 22 N -0.891 5.891 23 Si 0.940 3.060 24 H -0.271 1.271 25 H -0.287 1.287 26 H -0.274 1.274 27 C -0.190 4.190 28 C -0.189 4.189 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.417 0.583 41 H 0.409 0.591 42 H 0.038 0.962 43 H 0.085 0.915 44 H 0.261 0.739 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.567 -1.918 20.967 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 H 0.098 0.902 4 C -0.141 4.141 5 C -0.143 4.143 6 H 0.088 0.912 7 C -0.181 4.181 8 C -0.039 4.039 9 O -0.331 6.331 10 C -0.031 4.031 11 N -0.337 5.337 12 C 0.293 3.707 13 O -0.422 6.422 14 C 0.269 3.731 15 O -0.444 6.444 16 N -0.304 5.304 17 C 0.047 3.953 18 C 0.005 3.995 19 C -0.548 4.548 20 H 0.075 0.925 21 C -0.162 4.162 22 N -0.528 5.528 23 Si 0.766 3.234 24 H -0.197 1.197 25 H -0.213 1.213 26 H -0.199 1.199 27 C -0.228 4.228 28 C -0.227 4.227 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.130 0.870 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.254 0.746 41 H 0.245 0.755 42 H 0.056 0.944 43 H 0.102 0.898 44 H 0.070 0.930 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.101 0.899 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.648 -1.890 21.046 21.296 hybrid contribution -0.910 0.403 -0.715 1.225 sum 1.738 -1.487 20.331 20.459 Atomic orbital electron populations 1.22180 0.94170 1.03065 1.02646 1.21349 0.94823 0.97431 0.83383 0.90201 1.21864 0.93035 1.02649 0.96535 1.22742 0.96817 0.95410 0.99321 0.91249 1.22986 0.98708 0.99238 0.97213 1.23354 1.00294 0.86370 0.93887 1.88858 1.32565 1.49684 1.61968 1.23746 0.84582 0.97032 0.97703 1.45870 1.64525 1.15002 1.08254 1.20117 0.78787 0.86691 0.85129 1.90730 1.49914 1.16431 1.85147 1.20344 0.80559 0.86759 0.85400 1.90652 1.49622 1.17911 1.86236 1.45688 1.63890 1.14523 1.06288 1.20907 0.97775 0.95020 0.81552 1.19214 0.90534 0.97036 0.92706 1.20676 0.90071 0.98642 1.45378 0.92494 1.25486 1.00953 0.95761 0.93957 1.69944 1.23796 1.11128 1.47934 0.85883 0.79431 0.79333 0.78731 1.19662 1.21302 1.19924 1.22932 1.06058 0.97804 0.96041 1.22980 0.97939 0.97231 1.04506 0.94906 0.91203 0.88706 0.88826 0.87038 0.88126 0.89859 0.91076 0.89703 0.90823 0.90191 0.74609 0.75461 0.94375 0.89754 0.92973 0.90149 0.90474 0.89922 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.48 71.98 0.68 -2.33 16 2 C 0.13 2.58 2.51 44.99 0.11 2.70 16 3 H 0.08 1.79 6.81 -2.38 -0.02 1.78 16 4 C -0.10 -1.20 4.15 30.60 0.13 -1.07 16 5 C -0.12 -1.89 3.04 -9.49 -0.03 -1.92 16 6 H 0.07 1.37 7.68 -2.39 -0.02 1.35 16 7 C -0.14 -1.63 6.60 31.58 0.21 -1.42 16 8 C 0.04 0.55 7.70 72.35 0.56 1.10 16 9 O -0.41 -9.26 11.52 -148.98 -1.72 -10.98 16 10 C 0.05 0.85 6.45 72.67 0.47 1.32 16 11 N -0.68 -17.72 4.48 -443.86 -1.99 -19.71 16 12 C 0.51 18.32 7.85 87.27 0.69 19.01 16 13 O -0.54 -21.84 16.15 -3.25 -0.05 -21.89 16 14 C 0.49 20.37 7.88 87.27 0.69 21.06 16 15 O -0.56 -24.64 16.48 -3.25 -0.05 -24.70 16 16 N -0.66 -29.40 5.27 -464.43 -2.45 -31.84 16 17 C 0.17 8.03 4.75 86.38 0.41 8.45 16 18 C 0.01 0.27 2.00 -52.93 -0.11 0.17 16 19 C -0.51 -26.32 8.27 25.60 0.21 -26.11 16 20 H 0.06 2.94 7.84 -2.91 -0.02 2.92 16 21 C 0.04 2.11 5.13 84.66 0.43 2.54 16 22 N -0.89 -48.06 10.75 21.45 0.23 -47.83 16 23 Si 0.94 42.33 29.55 68.60 2.03 44.36 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 25 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 27 C -0.19 -8.09 9.96 30.62 0.30 -7.78 16 28 C -0.19 -7.66 9.92 30.62 0.30 -7.36 16 29 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.11 0.78 8.05 -2.39 -0.02 0.76 16 34 H 0.10 0.69 7.86 -2.39 -0.02 0.67 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.63 8.00 -2.39 -0.02 1.61 16 39 H 0.08 1.16 7.98 -2.39 -0.02 1.14 16 40 H 0.42 9.80 8.08 -92.71 -0.75 9.05 16 41 H 0.41 18.82 7.41 -92.70 -0.69 18.14 16 42 H 0.04 1.72 8.06 -2.39 -0.02 1.70 16 43 H 0.08 4.51 6.04 -2.39 -0.01 4.49 16 44 H 0.26 13.74 8.32 -92.71 -0.77 12.97 16 45 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 46 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 47 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 48 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 Total: -1.00 -63.67 392.90 0.59 -63.07 By element: Atomic # 1 Polarization: 41.65 SS G_CDS: -0.47 Total: 41.18 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 5.06 Total: 8.34 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -4.20 Total: -99.38 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -1.82 Total: -57.57 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -63.67 0.59 -63.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323215491.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.603 kcal (2) G-P(sol) polarization free energy of solvation -63.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds