Wall clock time and date at job start Tue Mar 31 2020 14:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.51040 * 2 1 4 4 C 1.53293 * 109.51311 * 120.09542 * 2 1 3 5 5 N 1.47148 * 108.38721 * 172.22748 * 4 2 1 6 6 C 1.34778 * 120.98294 * 129.48718 * 5 4 2 7 7 O 1.21353 * 120.00214 * 174.96498 * 6 5 4 8 8 C 1.49451 * 120.00119 * 354.96620 * 6 5 4 9 9 O 1.21352 * 119.99704 * 85.33333 * 8 6 5 10 10 N 1.34772 * 120.00235 * 265.34010 * 8 6 5 11 11 C 1.46931 * 120.63150 * 184.76717 * 10 8 6 12 12 C 1.53621 * 108.53707 * 126.36923 * 11 10 8 13 13 C 1.53042 * 109.24521 * 54.86242 * 12 11 10 14 14 C 1.50703 * 109.46003 * 178.48911 * 13 12 11 15 15 H 1.07996 * 119.99993 * 120.06306 * 14 13 12 16 16 C 1.37877 * 119.99638 * 300.06583 * 14 13 12 17 17 N 1.31515 * 119.99699 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00117 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.47061 * 90.00748 * 18 16 14 20 20 H 1.48506 * 109.46727 * 210.00123 * 18 16 14 21 21 H 1.48501 * 109.47509 * 329.99976 * 18 16 14 22 22 C 1.53034 * 109.53307 * 298.50471 * 13 12 11 23 23 C 1.46927 * 120.63126 * 5.05427 * 10 8 6 24 24 C 1.47155 * 118.03682 * 309.47116 * 5 4 2 25 25 H 1.08996 * 109.68219 * 170.25433 * 24 5 4 26 26 C 1.53002 * 109.67698 * 290.80935 * 24 5 4 27 27 C 1.53291 * 108.38510 * 50.52984 * 24 5 4 28 28 O 1.42955 * 109.51377 * 239.84536 * 2 1 3 29 29 H 1.08999 * 109.47567 * 299.90036 * 1 2 3 30 30 H 1.09003 * 109.46609 * 179.89857 * 1 2 3 31 31 H 1.09001 * 109.46898 * 59.90536 * 1 2 3 32 32 H 1.08997 * 109.68489 * 291.95266 * 4 2 1 33 33 H 1.08999 * 109.68128 * 52.50597 * 4 2 1 34 34 H 1.08991 * 109.58851 * 246.20523 * 11 10 8 35 35 H 1.08998 * 109.58587 * 6.63204 * 11 10 8 36 36 H 1.09002 * 109.63657 * 294.86285 * 12 11 10 37 37 H 1.09012 * 109.42837 * 174.72943 * 12 11 10 38 38 H 1.08995 * 109.44779 * 58.51705 * 13 12 11 39 39 H 0.96996 * 119.99867 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.50551 * 301.41386 * 22 13 12 41 41 H 1.09003 * 109.52259 * 181.33256 * 22 13 12 42 42 H 1.09000 * 109.58651 * 353.36840 * 23 10 8 43 43 H 1.08996 * 109.59101 * 113.65430 * 23 10 8 44 44 H 1.08991 * 109.47452 * 60.00025 * 26 24 5 45 45 H 1.09000 * 109.46453 * 180.02562 * 26 24 5 46 46 H 1.09006 * 109.46990 * 299.99757 * 26 24 5 47 47 H 1.09006 * 109.51406 * 67.62490 * 27 24 5 48 48 H 1.09002 * 109.51284 * 187.72436 * 27 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7245 1.2501 5 7 3.5012 -0.8756 1.1341 6 6 4.3193 -0.5030 2.1383 7 8 5.5110 -0.7190 2.0620 8 6 3.7588 0.1761 3.3459 9 8 3.3135 -0.4843 4.2615 10 7 3.7479 1.5218 3.4180 11 6 3.2970 2.2024 4.6397 12 6 4.3938 3.1808 5.0867 13 6 4.7301 4.1245 3.9297 14 6 5.7793 5.1105 4.3748 15 1 6.7301 5.1543 3.8646 16 6 5.5252 5.9566 5.4334 17 7 6.4406 6.8174 5.8214 18 14 3.8803 5.8812 6.3154 19 1 3.9630 4.9090 7.4348 20 1 3.5437 7.2249 6.8506 21 1 2.8266 5.4500 5.3620 22 6 5.2621 3.3134 2.7461 23 6 4.1805 2.3364 2.2743 24 6 4.0407 -1.4457 -0.1106 25 1 5.1252 -1.3375 -0.1240 26 6 3.6687 -2.9270 -0.2024 27 6 3.4313 -0.6860 -1.2943 28 8 2.0075 -0.6769 -1.1651 29 1 -0.3634 0.5123 0.8908 30 1 -0.3632 -1.0277 -0.0018 31 1 -0.3633 0.5153 -0.8891 32 1 1.8031 -0.1388 2.1377 33 1 1.5759 -1.7072 1.3217 34 1 2.3768 2.7493 4.4349 35 1 3.1203 1.4664 5.4240 36 1 5.2861 2.6246 5.3738 37 1 4.0370 3.7613 5.9377 38 1 3.8316 4.6621 3.6270 39 1 6.2618 7.4129 6.5659 40 1 6.1463 2.7559 3.0550 41 1 5.5238 3.9878 1.9307 42 1 4.5869 1.6888 1.4974 43 1 3.3303 2.8922 1.8790 44 1 2.5837 -3.0301 -0.1983 45 1 4.0704 -3.3458 -1.1251 46 1 4.0877 -3.4604 0.6509 47 1 3.8030 0.3387 -1.2996 48 1 3.7100 -1.1791 -2.2257 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324861016.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:30 Heat of formation + Delta-G solvation = -104.879935 kcal Electronic energy + Delta-G solvation = -29763.574191 eV Core-core repulsion = 25818.913094 eV Total energy + Delta-G solvation = -3944.661096 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.27852 -39.77156 -38.37845 -37.22840 -35.34398 -33.95828 -33.69540 -31.60568 -31.00056 -30.67149 -27.19507 -26.79500 -26.68091 -24.87879 -23.19450 -22.81742 -22.03590 -20.64791 -19.60157 -18.73833 -18.01154 -17.32561 -16.97440 -16.69204 -16.42807 -15.83396 -15.30996 -15.23993 -15.04475 -14.60725 -14.52606 -14.03937 -13.85300 -13.53986 -13.30401 -13.19340 -12.81881 -12.69192 -12.63047 -12.61016 -12.54702 -12.37487 -12.16229 -12.02289 -11.96720 -11.53533 -11.38219 -11.08362 -10.91009 -10.85731 -10.45583 -10.26996 -10.14330 -9.82791 -9.65934 -9.38760 -9.16647 -8.97417 -8.61380 -8.47199 -6.13866 -4.13921 1.98245 2.05562 2.48105 3.16959 3.20971 3.28291 3.30099 3.33826 4.02613 4.21323 4.33031 4.39259 4.58584 4.63622 4.69392 4.93587 4.97593 5.04189 5.12015 5.14972 5.20271 5.27495 5.29897 5.38849 5.41029 5.47737 5.54108 5.58719 5.64714 5.65975 5.76089 5.84227 5.87950 6.01160 6.01576 6.13721 6.39779 6.54031 6.64471 6.73531 6.74024 6.80540 7.05450 7.28675 7.39909 7.60761 7.66730 7.86277 8.44230 8.90042 9.47537 10.99420 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.019730 B = 0.003569 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.805456 B = 7844.517547 C = 8025.289108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.074 3.926 3 H 0.068 0.932 4 C 0.078 3.922 5 N -0.601 5.601 6 C 0.524 3.476 7 O -0.505 6.505 8 C 0.513 3.487 9 O -0.524 6.524 10 N -0.581 5.581 11 C 0.106 3.894 12 C -0.136 4.136 13 C 0.016 3.984 14 C -0.515 4.515 15 H 0.074 0.926 16 C 0.070 3.930 17 N -0.899 5.899 18 Si 0.885 3.115 19 H -0.277 1.277 20 H -0.296 1.296 21 H -0.265 1.265 22 C -0.114 4.114 23 C 0.103 3.897 24 C 0.101 3.899 25 H 0.111 0.889 26 C -0.156 4.156 27 C 0.055 3.945 28 O -0.372 6.372 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.030 0.970 39 H 0.264 0.736 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.188 -15.207 -14.691 24.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.015 3.985 3 H 0.086 0.914 4 C -0.045 4.045 5 N -0.338 5.338 6 C 0.307 3.693 7 O -0.378 6.378 8 C 0.294 3.706 9 O -0.401 6.401 10 N -0.315 5.315 11 C -0.015 4.015 12 C -0.174 4.174 13 C -0.003 4.003 14 C -0.553 4.553 15 H 0.092 0.908 16 C -0.132 4.132 17 N -0.537 5.537 18 Si 0.715 3.285 19 H -0.204 1.204 20 H -0.224 1.224 21 H -0.190 1.190 22 C -0.152 4.152 23 C -0.020 4.020 24 C -0.002 4.002 25 H 0.129 0.871 26 C -0.214 4.214 27 C -0.023 4.023 28 O -0.290 6.290 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.825 -15.595 -14.224 24.194 hybrid contribution -0.490 0.175 0.920 1.057 sum -12.316 -15.419 -13.304 23.800 Atomic orbital electron populations 1.21738 0.91827 1.03373 1.03216 1.22495 0.95883 0.95488 0.84590 0.91398 1.22555 0.79644 1.02573 0.99752 1.48271 1.07072 1.62564 1.15863 1.20438 0.86757 0.79260 0.82871 1.90810 1.14557 1.54808 1.77670 1.20060 0.79459 0.83151 0.87888 1.90784 1.46120 1.64238 1.38926 1.48225 1.62433 1.04126 1.16670 1.22030 0.98025 0.95841 0.85648 1.22496 0.97288 0.97134 1.00478 1.19138 0.97365 0.93037 0.90798 1.21002 1.01472 1.16769 1.16038 0.90752 1.25038 0.96490 0.94939 0.96752 1.69892 1.33957 1.22067 1.27750 0.86886 0.85082 0.76266 0.80255 1.20429 1.22379 1.18991 1.21839 0.96734 0.96751 0.99857 1.22021 0.99054 0.94078 0.86805 1.22019 1.00808 0.94225 0.83140 0.87150 1.22023 1.02679 0.94138 1.02556 1.23015 0.81208 1.00198 0.97847 1.87967 1.20727 1.77270 1.43084 0.90541 0.91458 0.91108 0.88898 0.89721 0.91203 0.89534 0.91372 0.92080 0.95237 0.92577 0.91764 0.90905 0.91346 0.90837 0.91620 0.91063 0.92090 0.92210 0.87211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.57 37.16 0.36 -0.57 16 2 C 0.07 0.61 3.40 -26.58 -0.09 0.52 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C 0.08 0.76 5.46 -3.54 -0.02 0.74 16 5 N -0.60 -7.04 2.71 -165.25 -0.45 -7.49 16 6 C 0.52 8.12 5.48 -11.58 -0.06 8.06 16 7 O -0.51 -9.22 16.59 5.49 0.09 -9.13 16 8 C 0.51 8.66 5.52 -11.59 -0.06 8.59 16 9 O -0.52 -10.02 16.53 5.49 0.09 -9.93 16 10 N -0.58 -9.48 2.97 -173.01 -0.51 -9.99 16 11 C 0.11 1.81 6.45 -3.48 -0.02 1.79 16 12 C -0.14 -2.80 4.86 -26.39 -0.13 -2.93 16 13 C 0.02 0.34 1.65 -91.73 -0.15 0.19 16 14 C -0.52 -13.84 9.14 -34.44 -0.31 -14.16 16 15 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 16 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 17 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 18 Si 0.88 20.95 24.38 -169.99 -4.14 16.80 16 19 H -0.28 -6.44 6.85 56.52 0.39 -6.05 16 20 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.26 -5.81 6.53 56.52 0.37 -5.44 16 22 C -0.11 -2.09 5.30 -26.61 -0.14 -2.23 16 23 C 0.10 1.52 6.35 -3.71 -0.02 1.50 16 24 C 0.10 0.96 3.21 -67.42 -0.22 0.75 16 25 H 0.11 1.15 7.12 -51.93 -0.37 0.78 16 26 C -0.16 -1.29 9.24 37.16 0.34 -0.95 16 27 C 0.05 0.43 6.36 37.31 0.24 0.66 16 28 O -0.37 -3.31 10.01 -35.23 -0.35 -3.66 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.98 6.40 -51.93 -0.33 0.64 16 33 H 0.08 0.76 7.67 -51.93 -0.40 0.36 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.09 1.48 7.03 -51.93 -0.37 1.12 16 36 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 37 H 0.06 1.32 3.24 -51.92 -0.17 1.16 16 38 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.07 0.94 6.31 -51.93 -0.33 0.61 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.06 0.55 7.22 -51.93 -0.38 0.17 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 369.43 15.07 5.57 5.57 Total: -1.00 -32.75 369.43 -7.14 -39.89 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.81 Total: 0.30 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -0.40 Total: 3.81 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: -0.19 Total: -43.65 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.17 Total: -22.72 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.14 Total: 16.80 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.75 -7.14 -39.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324861016.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.986 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds