Wall clock time and date at job start Tue Mar 31 2020 14:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47422 * 2 1 4 4 C 1.52997 * 109.47210 * 239.99974 * 2 1 3 5 5 O 1.42899 * 109.47167 * 305.00042 * 4 2 1 6 6 C 1.42906 * 114.00116 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47424 * 179.97438 * 6 5 4 8 8 C 1.53002 * 117.50012 * 243.75089 * 7 6 5 9 9 C 1.52992 * 117.49959 * 175.08771 * 7 6 5 10 10 N 1.46505 * 109.47169 * 119.99955 * 2 1 3 11 11 C 1.34768 * 120.00082 * 274.99822 * 10 2 1 12 12 O 1.21345 * 120.00101 * 0.02562 * 11 10 2 13 13 C 1.49453 * 120.00060 * 179.97438 * 11 10 2 14 14 O 1.21347 * 119.99738 * 5.09600 * 13 11 10 15 15 N 1.34782 * 120.00141 * 185.08842 * 13 11 10 16 16 C 1.46497 * 119.99894 * 185.03768 * 15 13 11 17 17 C 1.53005 * 109.46780 * 184.77988 * 16 15 13 18 18 C 1.50694 * 115.55017 * 294.81935 * 17 16 15 19 19 H 1.08003 * 119.99667 * 95.20821 * 18 17 16 20 20 C 1.37878 * 120.00569 * 274.92361 * 18 17 16 21 21 N 1.31513 * 119.99163 * 355.42361 * 20 18 17 22 22 Si 1.86794 * 120.00501 * 175.42139 * 20 18 17 23 23 H 1.48506 * 109.47138 * 59.99993 * 22 20 18 24 24 H 1.48497 * 109.47408 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47174 * 300.00591 * 22 20 18 26 26 C 1.53002 * 117.49623 * 80.49302 * 17 16 15 27 27 C 1.53002 * 117.49534 * 149.14978 * 17 16 15 28 28 H 1.09009 * 109.47215 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47313 * 299.99753 * 1 2 3 30 30 H 1.08998 * 109.47527 * 59.99924 * 1 2 3 31 31 H 1.09004 * 109.47252 * 64.99980 * 4 2 1 32 32 H 1.09001 * 109.47847 * 184.99708 * 4 2 1 33 33 H 1.09000 * 109.46960 * 299.99923 * 6 5 4 34 34 H 1.09001 * 109.46754 * 59.99772 * 6 5 4 35 35 H 1.09009 * 115.54749 * 29.41765 * 7 6 5 36 36 H 1.08996 * 117.49561 * 359.97438 * 8 7 6 37 37 H 1.08996 * 117.49676 * 145.01814 * 8 7 6 38 38 H 1.09005 * 117.49735 * 214.97862 * 9 7 6 39 39 H 1.08997 * 117.50283 * 359.97438 * 9 7 6 40 40 H 0.97003 * 120.00007 * 95.00353 * 10 2 1 41 41 H 0.97004 * 119.99403 * 5.04265 * 15 13 11 42 42 H 1.09003 * 109.46616 * 64.78885 * 16 15 13 43 43 H 1.08993 * 109.47729 * 304.78355 * 16 15 13 44 44 H 0.97009 * 119.99393 * 184.99658 * 21 20 18 45 45 H 1.08995 * 117.49715 * 214.99983 * 26 17 16 46 46 H 1.09003 * 117.49834 * 0.02562 * 26 17 16 47 47 H 1.09005 * 117.49794 * 359.97438 * 27 17 16 48 48 H 1.08999 * 117.49412 * 144.97246 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.4702 -2.0303 -1.3094 6 6 1.8836 -2.7925 -2.4453 7 6 1.2163 -4.1688 -2.4065 8 6 2.1255 -5.3910 -2.2637 9 6 1.4417 -5.0972 -3.6014 10 7 2.0183 -0.6906 1.1962 11 6 2.1471 -0.0183 2.3571 12 8 1.8581 1.1590 2.4117 13 6 2.6447 -0.7230 3.5775 14 8 3.0202 -1.8745 3.5025 15 7 2.6766 -0.0795 4.7614 16 6 3.2660 -0.7311 5.9336 17 6 3.0693 0.1573 7.1637 18 6 3.7924 1.4791 7.1331 19 1 3.2797 2.3674 6.7945 20 6 5.1067 1.5557 7.5428 21 7 5.7017 0.4957 8.0446 22 14 6.0420 3.1649 7.3853 23 1 5.3566 4.2157 8.1800 24 1 7.4263 2.9846 7.8916 25 1 6.0866 3.5738 5.9583 26 6 1.7053 0.1140 7.8555 27 6 2.9218 -0.5361 8.5195 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.7516 -0.1583 -2.1370 32 1 3.1263 -0.7995 -1.2057 33 1 1.5916 -2.2724 -3.3577 34 1 2.9667 -2.9136 -2.4269 35 1 0.2429 -4.2056 -1.9170 36 1 3.1990 -5.2146 -2.1979 37 1 1.7502 -6.2321 -1.6807 38 1 0.6169 -5.7452 -3.8979 39 1 2.0651 -4.7275 -4.4154 40 1 2.2491 -1.6318 1.1526 41 1 2.3092 0.8151 4.8371 42 1 4.3315 -0.8873 5.7650 43 1 2.7794 -1.6924 6.0981 44 1 6.6017 0.5672 8.3996 45 1 1.3310 1.0416 8.2885 46 1 0.9483 -0.5477 7.4346 47 1 2.9644 -1.6252 8.5351 48 1 3.3481 -0.0363 9.3893 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326724651.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:38 Heat of formation + Delta-G solvation = -74.988707 kcal Electronic energy + Delta-G solvation = -27223.544666 eV Core-core repulsion = 23280.179750 eV Total energy + Delta-G solvation = -3943.364915 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.33306 -38.99193 -38.19664 -37.11234 -36.69254 -35.25286 -33.35961 -31.95983 -31.16839 -27.90026 -27.05662 -26.19068 -25.43796 -23.68084 -22.76143 -21.30489 -21.10830 -20.80656 -19.93270 -19.50598 -18.03003 -17.39288 -16.59162 -16.29512 -16.11730 -15.87833 -15.42709 -14.99635 -14.84197 -14.68580 -14.53029 -14.09839 -13.81254 -13.63196 -13.37561 -13.16993 -12.69129 -12.63626 -12.45624 -11.94651 -11.89194 -11.81237 -11.61284 -11.43758 -11.26263 -11.21620 -10.97046 -10.94160 -10.78584 -10.61480 -10.53538 -10.23585 -9.86765 -9.60639 -9.22808 -9.16832 -9.06986 -8.51205 -8.36680 -8.16410 -6.07617 -4.17201 1.82702 2.70680 3.07878 3.29259 3.34224 3.37492 3.49377 3.64838 4.07748 4.35936 4.37031 4.49101 4.52597 4.67179 4.79162 4.90695 4.95498 4.97384 5.11012 5.19737 5.20589 5.22335 5.24996 5.35072 5.36771 5.52414 5.57021 5.71980 5.79131 5.82146 5.97949 6.14564 6.30368 6.34601 6.42079 6.49774 6.68774 6.77037 6.81555 7.03324 7.09933 7.29324 7.35615 7.51819 7.82175 7.91181 8.19291 8.33013 8.56240 8.84754 9.50245 10.99431 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017024 B = 0.002366 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.366673 B =11829.893011 C =12188.133117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.103 0.897 4 C 0.054 3.946 5 O -0.379 6.379 6 C 0.094 3.906 7 C -0.154 4.154 8 C -0.176 4.176 9 C -0.176 4.176 10 N -0.699 5.699 11 C 0.509 3.491 12 O -0.521 6.521 13 C 0.495 3.505 14 O -0.540 6.540 15 N -0.667 5.667 16 C 0.159 3.841 17 C 0.021 3.979 18 C -0.500 4.500 19 H 0.061 0.939 20 C 0.073 3.927 21 N -0.876 5.876 22 Si 0.891 3.109 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.210 4.210 27 C -0.139 4.139 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.416 0.584 41 H 0.413 0.587 42 H 0.073 0.927 43 H 0.048 0.952 44 H 0.262 0.738 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.330 -6.778 -21.512 24.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.041 3.959 3 H 0.121 0.879 4 C -0.023 4.023 5 O -0.299 6.299 6 C 0.017 3.983 7 C -0.172 4.172 8 C -0.213 4.213 9 C -0.213 4.213 10 N -0.354 5.354 11 C 0.290 3.710 12 O -0.396 6.396 13 C 0.274 3.726 14 O -0.419 6.419 15 N -0.317 5.317 16 C 0.037 3.963 17 C 0.020 3.980 18 C -0.538 4.538 19 H 0.079 0.921 20 C -0.131 4.131 21 N -0.512 5.512 22 Si 0.719 3.281 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.201 1.201 26 C -0.247 4.247 27 C -0.178 4.178 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.253 0.747 41 H 0.250 0.750 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.157 -6.882 -21.336 23.856 hybrid contribution 0.786 0.888 -0.193 1.202 sum -7.372 -5.993 -21.529 23.532 Atomic orbital electron populations 1.22083 0.94216 1.03125 1.02396 1.21103 0.95477 0.96772 0.82548 0.87876 1.22824 0.97744 0.84213 0.97565 1.87895 1.70226 1.26165 1.45585 1.22001 0.97524 0.90323 0.88430 1.22131 1.01497 0.90184 1.03354 1.23097 0.98866 0.99528 0.99810 1.22984 1.03627 1.02770 0.91893 1.45789 1.65822 1.15188 1.08586 1.20507 0.78457 0.87055 0.84959 1.90745 1.48379 1.15488 1.84994 1.19944 0.81072 0.86787 0.84785 1.90714 1.48862 1.16649 1.85658 1.45886 1.57164 1.20405 1.08197 1.21204 0.97817 0.93766 0.83526 1.19029 0.93757 0.96243 0.88947 1.20344 0.95687 0.92211 1.45541 0.92052 1.24991 0.97315 0.96249 0.94559 1.69984 1.14144 1.28416 1.38652 0.86672 0.78923 0.83821 0.78701 1.20206 1.21295 1.20053 1.23033 0.91829 1.01757 1.08090 1.22475 0.99883 0.96745 0.98660 0.91290 0.91889 0.91722 0.91535 0.92284 0.92902 0.93065 0.86778 0.88565 0.88466 0.88427 0.88743 0.74728 0.75034 0.90841 0.93419 0.92811 0.90224 0.91638 0.91738 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.29 37.15 0.34 -1.27 16 2 C 0.15 1.54 2.98 -67.93 -0.20 1.33 16 3 H 0.10 1.13 7.58 -51.93 -0.39 0.73 16 4 C 0.05 0.44 5.68 37.16 0.21 0.65 16 5 O -0.38 -3.54 9.20 -35.23 -0.32 -3.86 16 6 C 0.09 0.70 6.22 37.16 0.23 0.93 16 7 C -0.15 -1.14 6.05 -90.62 -0.55 -1.69 16 8 C -0.18 -1.23 10.18 -26.69 -0.27 -1.50 16 9 C -0.18 -1.04 10.25 -26.70 -0.27 -1.32 16 10 N -0.70 -9.29 5.05 -54.24 -0.27 -9.56 16 11 C 0.51 8.51 7.85 -11.59 -0.09 8.42 16 12 O -0.52 -9.57 16.16 5.50 0.09 -9.49 16 13 C 0.49 9.50 7.88 -11.58 -0.09 9.41 16 14 O -0.54 -11.23 16.47 5.50 0.09 -11.14 16 15 N -0.67 -13.58 5.46 -60.73 -0.33 -13.91 16 16 C 0.16 3.59 5.53 -4.04 -0.02 3.56 16 17 C 0.02 0.50 1.47 -155.66 -0.23 0.27 16 18 C -0.50 -13.04 8.59 -34.44 -0.30 -13.33 16 19 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 20 C 0.07 1.95 5.43 -17.82 -0.10 1.85 16 21 N -0.88 -24.19 12.65 55.43 0.70 -23.49 16 22 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C -0.21 -4.42 9.96 -26.69 -0.27 -4.68 16 27 C -0.14 -3.18 9.14 -26.69 -0.24 -3.43 16 28 H 0.07 0.72 7.56 -51.92 -0.39 0.33 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.36 7.87 -51.93 -0.41 -0.05 16 35 H 0.11 0.92 8.14 -51.92 -0.42 0.50 16 36 H 0.10 0.65 8.03 -51.93 -0.42 0.24 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.42 5.43 7.86 -40.82 -0.32 5.11 16 41 H 0.41 8.32 7.84 -40.82 -0.32 8.00 16 42 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 43 H 0.05 1.04 8.05 -51.93 -0.42 0.62 16 44 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 45 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 48 H 0.09 2.15 8.14 -51.93 -0.42 1.72 16 LS Contribution 407.28 15.07 6.14 6.14 Total: -1.00 -29.51 407.28 -8.91 -38.43 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -8.14 Total: 11.84 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -1.85 Total: -0.80 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.10 Total: -46.96 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.14 Total: -24.49 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -29.51 -8.91 -38.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326724651.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.559 kcal (2) G-P(sol) polarization free energy of solvation -29.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds