Wall clock time and date at job start Tue Mar 31 2020 14:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47422 * 2 1 4 4 C 1.52997 * 109.47210 * 239.99974 * 2 1 3 5 5 O 1.42899 * 109.47167 * 305.00042 * 4 2 1 6 6 C 1.42906 * 114.00116 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47424 * 179.97438 * 6 5 4 8 8 C 1.53002 * 117.50012 * 243.75089 * 7 6 5 9 9 C 1.52992 * 117.49959 * 175.08771 * 7 6 5 10 10 N 1.46505 * 109.47169 * 119.99955 * 2 1 3 11 11 C 1.34768 * 120.00082 * 274.99822 * 10 2 1 12 12 O 1.21345 * 120.00101 * 0.02562 * 11 10 2 13 13 C 1.49453 * 120.00060 * 179.97438 * 11 10 2 14 14 O 1.21347 * 119.99738 * 5.09600 * 13 11 10 15 15 N 1.34782 * 120.00141 * 185.08842 * 13 11 10 16 16 C 1.46497 * 119.99894 * 185.03768 * 15 13 11 17 17 C 1.53005 * 109.46780 * 184.77988 * 16 15 13 18 18 C 1.50694 * 115.55017 * 294.81935 * 17 16 15 19 19 H 1.08003 * 119.99667 * 95.20821 * 18 17 16 20 20 C 1.37878 * 120.00569 * 274.92361 * 18 17 16 21 21 N 1.31513 * 119.99163 * 355.42361 * 20 18 17 22 22 Si 1.86794 * 120.00501 * 175.42139 * 20 18 17 23 23 H 1.48506 * 109.47138 * 59.99993 * 22 20 18 24 24 H 1.48497 * 109.47408 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47174 * 300.00591 * 22 20 18 26 26 C 1.53002 * 117.49623 * 80.49302 * 17 16 15 27 27 C 1.53002 * 117.49534 * 149.14978 * 17 16 15 28 28 H 1.09009 * 109.47215 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47313 * 299.99753 * 1 2 3 30 30 H 1.08998 * 109.47527 * 59.99924 * 1 2 3 31 31 H 1.09004 * 109.47252 * 64.99980 * 4 2 1 32 32 H 1.09001 * 109.47847 * 184.99708 * 4 2 1 33 33 H 1.09000 * 109.46960 * 299.99923 * 6 5 4 34 34 H 1.09001 * 109.46754 * 59.99772 * 6 5 4 35 35 H 1.09009 * 115.54749 * 29.41765 * 7 6 5 36 36 H 1.08996 * 117.49561 * 359.97438 * 8 7 6 37 37 H 1.08996 * 117.49676 * 145.01814 * 8 7 6 38 38 H 1.09005 * 117.49735 * 214.97862 * 9 7 6 39 39 H 1.08997 * 117.50283 * 359.97438 * 9 7 6 40 40 H 0.97003 * 120.00007 * 95.00353 * 10 2 1 41 41 H 0.97004 * 119.99403 * 5.04265 * 15 13 11 42 42 H 1.09003 * 109.46616 * 64.78885 * 16 15 13 43 43 H 1.08993 * 109.47729 * 304.78355 * 16 15 13 44 44 H 0.97009 * 119.99393 * 184.99658 * 21 20 18 45 45 H 1.08995 * 117.49715 * 214.99983 * 26 17 16 46 46 H 1.09003 * 117.49834 * 0.02562 * 26 17 16 47 47 H 1.09005 * 117.49794 * 359.97438 * 27 17 16 48 48 H 1.08999 * 117.49412 * 144.97246 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.4702 -2.0303 -1.3094 6 6 1.8836 -2.7925 -2.4453 7 6 1.2163 -4.1688 -2.4065 8 6 2.1255 -5.3910 -2.2637 9 6 1.4417 -5.0972 -3.6014 10 7 2.0183 -0.6906 1.1962 11 6 2.1471 -0.0183 2.3571 12 8 1.8581 1.1590 2.4117 13 6 2.6447 -0.7230 3.5775 14 8 3.0202 -1.8745 3.5025 15 7 2.6766 -0.0795 4.7614 16 6 3.2660 -0.7311 5.9336 17 6 3.0693 0.1573 7.1637 18 6 3.7924 1.4791 7.1331 19 1 3.2797 2.3674 6.7945 20 6 5.1067 1.5557 7.5428 21 7 5.7017 0.4957 8.0446 22 14 6.0420 3.1649 7.3853 23 1 5.3566 4.2157 8.1800 24 1 7.4263 2.9846 7.8916 25 1 6.0866 3.5738 5.9583 26 6 1.7053 0.1140 7.8555 27 6 2.9218 -0.5361 8.5195 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.7516 -0.1583 -2.1370 32 1 3.1263 -0.7995 -1.2057 33 1 1.5916 -2.2724 -3.3577 34 1 2.9667 -2.9136 -2.4269 35 1 0.2429 -4.2056 -1.9170 36 1 3.1990 -5.2146 -2.1979 37 1 1.7502 -6.2321 -1.6807 38 1 0.6169 -5.7452 -3.8979 39 1 2.0651 -4.7275 -4.4154 40 1 2.2491 -1.6318 1.1526 41 1 2.3092 0.8151 4.8371 42 1 4.3315 -0.8873 5.7650 43 1 2.7794 -1.6924 6.0981 44 1 6.6017 0.5672 8.3996 45 1 1.3310 1.0416 8.2885 46 1 0.9483 -0.5477 7.4346 47 1 2.9644 -1.6252 8.5351 48 1 3.3481 -0.0363 9.3893 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326724651.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:37 Heat of formation + Delta-G solvation = -93.719241 kcal Electronic energy + Delta-G solvation = -27224.356883 eV Core-core repulsion = 23280.179750 eV Total energy + Delta-G solvation = -3944.177132 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.70698 -40.00298 -39.32179 -38.46635 -37.81969 -36.26165 -34.98556 -33.96347 -32.19044 -28.75699 -28.51202 -27.43077 -26.86238 -25.07872 -23.24783 -22.94437 -22.06001 -21.54654 -21.42258 -21.19188 -19.54580 -18.26456 -18.01483 -17.59648 -17.03125 -16.99220 -16.73768 -16.58511 -16.31809 -15.81736 -15.61344 -15.33437 -15.12473 -14.89376 -14.48482 -14.40094 -14.17718 -13.68867 -13.49611 -13.32698 -13.28058 -12.95766 -12.82207 -12.78755 -12.59018 -12.39297 -12.38358 -12.10238 -12.01845 -11.95712 -11.43496 -11.31294 -11.17675 -10.97226 -10.74217 -10.45712 -10.43175 -10.33313 -10.11727 -9.96517 -8.10592 -6.24332 0.38188 1.38498 1.42164 1.44595 1.50514 2.16855 2.41680 2.48087 2.72911 2.96955 3.16730 3.42753 3.59839 3.70956 3.91751 3.97719 4.03631 4.14239 4.19540 4.35974 4.38143 4.45823 4.50998 4.52336 4.62006 4.62186 4.68529 4.72928 4.77451 4.79052 4.91642 4.94452 5.01767 5.02959 5.23708 5.24945 5.26025 5.27977 5.34725 5.37519 5.52343 5.68017 5.76959 6.01174 6.22601 6.35621 6.46409 6.78250 6.83018 7.00738 7.45162 8.95874 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017024 B = 0.002366 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.366673 B =11829.893011 C =12188.133117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 H 0.103 0.897 4 C 0.058 3.942 5 O -0.398 6.398 6 C 0.092 3.908 7 C -0.167 4.167 8 C -0.188 4.188 9 C -0.161 4.161 10 N -0.683 5.683 11 C 0.515 3.485 12 O -0.539 6.539 13 C 0.494 3.506 14 O -0.557 6.557 15 N -0.669 5.669 16 C 0.175 3.825 17 C -0.003 4.003 18 C -0.508 4.508 19 H 0.058 0.942 20 C 0.027 3.973 21 N -0.904 5.904 22 Si 0.947 3.053 23 H -0.270 1.270 24 H -0.287 1.287 25 H -0.276 1.276 26 C -0.181 4.181 27 C -0.145 4.145 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.418 0.582 41 H 0.415 0.585 42 H 0.040 0.960 43 H 0.054 0.946 44 H 0.260 0.740 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.075 0.925 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.185 -6.431 -23.597 26.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.036 3.964 3 H 0.121 0.879 4 C -0.019 4.019 5 O -0.318 6.318 6 C 0.016 3.984 7 C -0.185 4.185 8 C -0.225 4.225 9 C -0.198 4.198 10 N -0.336 5.336 11 C 0.296 3.704 12 O -0.417 6.417 13 C 0.275 3.725 14 O -0.437 6.437 15 N -0.319 5.319 16 C 0.051 3.949 17 C -0.004 4.004 18 C -0.545 4.545 19 H 0.076 0.924 20 C -0.174 4.174 21 N -0.541 5.541 22 Si 0.773 3.227 23 H -0.195 1.195 24 H -0.213 1.213 25 H -0.201 1.201 26 C -0.218 4.218 27 C -0.184 4.184 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.255 0.745 41 H 0.251 0.749 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.093 0.907 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.032 -6.542 -23.458 25.974 hybrid contribution 1.007 0.720 0.396 1.300 sum -8.025 -5.822 -23.062 25.102 Atomic orbital electron populations 1.22025 0.93613 1.02864 1.02657 1.21393 0.95925 0.96917 0.82175 0.87889 1.22819 0.97807 0.84118 0.97116 1.87868 1.70582 1.26680 1.46655 1.22104 0.97704 0.90159 0.88419 1.22160 1.01123 0.90567 1.04625 1.23155 0.98898 0.99431 1.00981 1.23064 1.03524 1.01719 0.91505 1.45845 1.64188 1.15195 1.08367 1.19977 0.78817 0.86675 0.84977 1.90742 1.49730 1.16014 1.85187 1.20419 0.80276 0.86573 0.85258 1.90698 1.49473 1.17506 1.86025 1.45797 1.57394 1.20470 1.08233 1.20828 0.96003 0.94029 0.84012 1.19075 0.95845 0.95828 0.89636 1.20617 0.95995 0.93163 1.44774 0.92373 1.25652 0.98230 0.98901 0.94619 1.70086 1.14270 1.29952 1.39771 0.85792 0.77730 0.80742 0.78447 1.19523 1.21270 1.20112 1.23020 0.91072 1.01882 1.05834 1.22398 1.01247 0.97215 0.97494 0.91747 0.93850 0.89223 0.88701 0.91924 0.91289 0.92748 0.87833 0.88551 0.88710 0.87653 0.87556 0.74483 0.74855 0.94175 0.92771 0.93056 0.89870 0.89271 0.90682 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.29 71.98 0.67 -2.16 16 2 C 0.14 2.69 2.98 44.99 0.13 2.82 16 3 H 0.10 2.06 7.58 -2.39 -0.02 2.04 16 4 C 0.06 0.81 5.68 71.98 0.41 1.22 16 5 O -0.40 -6.65 9.20 -148.98 -1.37 -8.02 16 6 C 0.09 1.19 6.22 71.98 0.45 1.64 16 7 C -0.17 -2.27 6.05 -10.80 -0.07 -2.33 16 8 C -0.19 -2.45 10.18 30.62 0.31 -2.14 16 9 C -0.16 -1.62 10.25 30.62 0.31 -1.31 16 10 N -0.68 -17.42 5.05 -443.88 -2.24 -19.66 16 11 C 0.52 16.91 7.85 87.27 0.69 17.59 16 12 O -0.54 -19.49 16.16 -3.23 -0.05 -19.54 16 13 C 0.49 18.90 7.88 87.27 0.69 19.59 16 14 O -0.56 -23.15 16.47 -3.24 -0.05 -23.20 16 15 N -0.67 -27.24 5.46 -464.41 -2.54 -29.78 16 16 C 0.17 7.92 5.53 86.38 0.48 8.39 16 17 C 0.00 -0.15 1.47 -52.93 -0.08 -0.22 16 18 C -0.51 -26.55 8.59 25.60 0.22 -26.33 16 19 H 0.06 3.01 7.82 -2.91 -0.02 2.98 16 20 C 0.03 1.45 5.43 84.66 0.46 1.91 16 21 N -0.90 -50.69 12.65 21.45 0.27 -50.42 16 22 Si 0.95 43.03 29.54 68.60 2.03 45.05 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 26 C -0.18 -7.36 9.96 30.62 0.30 -7.06 16 27 C -0.15 -6.61 9.14 30.62 0.28 -6.33 16 28 H 0.06 1.25 7.56 -2.38 -0.02 1.23 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.66 7.87 -2.39 -0.02 0.64 16 35 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.10 1.23 8.03 -2.39 -0.02 1.21 16 37 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.42 10.52 7.86 -92.71 -0.73 9.79 16 41 H 0.41 16.64 7.84 -92.71 -0.73 15.92 16 42 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.05 2.35 8.05 -2.39 -0.02 2.33 16 44 H 0.26 14.09 8.32 -92.70 -0.77 13.32 16 45 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 46 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 47 H 0.07 3.20 8.14 -2.38 -0.02 3.18 16 48 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -62.88 407.28 0.81 -62.07 By element: Atomic # 1 Polarization: 38.70 SS G_CDS: -0.49 Total: 38.20 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 5.26 Total: 5.29 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -4.51 Total: -99.86 kcal Atomic # 8 Polarization: -49.29 SS G_CDS: -1.48 Total: -50.76 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -62.88 0.81 -62.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326724651.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.646 kcal (2) G-P(sol) polarization free energy of solvation -62.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds