Wall clock time and date at job start Tue Mar 31 2020 14:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46706 * 2 1 4 4 O 1.42900 * 109.47029 * 240.00143 * 2 1 3 5 5 C 1.52999 * 109.46968 * 119.99822 * 2 1 3 6 6 C 1.53003 * 109.46733 * 182.40906 * 5 2 1 7 7 H 1.08996 * 109.87375 * 302.74649 * 6 5 2 8 8 C 1.54323 * 109.88337 * 63.76553 * 6 5 2 9 9 C 1.55153 * 102.94598 * 141.60735 * 8 6 5 10 10 C 1.54915 * 101.58167 * 324.49722 * 9 8 6 11 11 N 1.47023 * 109.87968 * 181.56865 * 6 5 2 12 12 C 1.34778 * 125.64561 * 61.59814 * 11 6 5 13 13 O 1.21347 * 120.00144 * 4.88235 * 12 11 6 14 14 C 1.49450 * 119.99583 * 184.87903 * 12 11 6 15 15 O 1.21345 * 120.00697 * 355.21949 * 14 12 11 16 16 N 1.34783 * 119.99552 * 175.22073 * 14 12 11 17 17 C 1.46504 * 119.99969 * 185.01066 * 16 14 12 18 18 C 1.52994 * 109.47144 * 185.07724 * 17 16 14 19 19 C 1.50702 * 115.55171 * 39.70540 * 18 17 16 20 20 H 1.08002 * 119.99646 * 273.64282 * 19 18 17 21 21 C 1.37871 * 120.00205 * 93.63766 * 19 18 17 22 22 N 1.31513 * 120.00047 * 183.91083 * 21 19 18 23 23 Si 1.86806 * 119.99942 * 3.91154 * 21 19 18 24 24 H 1.48500 * 109.46960 * 94.35563 * 23 21 19 25 25 H 1.48498 * 109.47194 * 214.35379 * 23 21 19 26 26 H 1.48500 * 109.47079 * 334.35586 * 23 21 19 27 27 C 1.52999 * 117.49903 * 253.99345 * 18 17 16 28 28 C 1.53000 * 117.49793 * 185.37075 * 18 17 16 29 29 H 1.08998 * 109.46706 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46807 * 300.00466 * 1 2 3 31 31 H 1.09002 * 109.46741 * 60.00357 * 1 2 3 32 32 H 0.96700 * 114.00115 * 299.99200 * 4 2 1 33 33 H 1.09000 * 109.46985 * 302.40969 * 5 2 1 34 34 H 1.09001 * 109.47116 * 62.40970 * 5 2 1 35 35 H 1.08998 * 110.72046 * 259.97362 * 8 6 5 36 36 H 1.09006 * 110.72371 * 23.06264 * 8 6 5 37 37 H 1.08998 * 111.00359 * 82.56726 * 9 8 6 38 38 H 1.09000 * 111.00823 * 206.38501 * 9 8 6 39 39 H 1.08998 * 110.36726 * 155.84346 * 10 9 8 40 40 H 1.08995 * 110.36475 * 278.17034 * 10 9 8 41 41 H 0.96998 * 120.00069 * 5.02227 * 16 14 12 42 42 H 1.09000 * 109.46956 * 305.08288 * 17 16 14 43 43 H 1.09000 * 109.46976 * 65.07785 * 17 16 14 44 44 H 0.97006 * 120.00057 * 180.02562 * 22 21 19 45 45 H 1.08997 * 117.50018 * 359.97438 * 27 18 17 46 46 H 1.08995 * 117.49776 * 145.02249 * 27 18 17 47 47 H 1.08999 * 117.50304 * 214.98233 * 28 18 17 48 48 H 1.08999 * 117.50247 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2493 6 6 3.5689 -0.6689 1.2799 7 1 3.9731 -1.1122 0.3699 8 6 4.0415 0.7948 1.4054 9 6 5.2598 0.6860 2.3600 10 6 4.8059 -0.4454 3.3159 11 7 4.0703 -1.3920 2.4577 12 6 3.8871 -2.7029 2.7113 13 8 3.3387 -3.4088 1.8907 14 6 4.3596 -3.2872 4.0032 15 8 4.9845 -2.6025 4.7863 16 7 4.0916 -4.5747 4.2985 17 6 4.4577 -5.1171 5.6092 18 6 4.1619 -6.6179 5.6408 19 6 4.4891 -7.3715 4.3774 20 1 3.7637 -7.4281 3.5792 21 6 5.7144 -7.9886 4.2405 22 7 6.0298 -8.5806 3.1093 23 14 6.9265 -7.9840 5.6619 24 1 6.7684 -9.2317 6.4513 25 1 8.3113 -7.9061 5.1312 26 1 6.6635 -6.8104 6.5329 27 6 2.9464 -7.0816 6.4459 28 6 4.3586 -7.3489 6.9704 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.7211 -1.5952 -1.2329 33 1 1.6418 -0.2329 2.1387 34 1 1.7124 -1.7606 1.2280 35 1 4.3459 1.1864 0.4348 36 1 3.2599 1.4164 1.8425 37 1 6.1590 0.3994 1.8147 38 1 5.4151 1.6182 2.9031 39 1 5.6713 -0.9334 3.7640 40 1 4.1503 -0.0474 4.0904 41 1 3.6565 -5.1421 3.6431 42 1 5.5204 -4.9523 5.7867 43 1 3.8779 -4.6162 6.3845 44 1 6.8917 -9.0151 3.0130 45 1 2.3576 -6.3176 6.9534 46 1 2.3829 -7.9319 6.0618 47 1 4.7243 -8.3750 6.9314 48 1 4.6991 -6.7607 7.8226 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330223472.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:03 Heat of formation + Delta-G solvation = -96.690691 kcal Electronic energy + Delta-G solvation = -28533.487588 eV Core-core repulsion = 24589.181604 eV Total energy + Delta-G solvation = -3944.305984 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.65670 -39.03278 -37.82660 -37.12241 -37.04741 -33.62854 -32.49576 -32.17183 -31.58637 -29.90827 -27.31342 -25.91523 -25.59878 -24.30779 -22.19203 -21.93578 -21.79255 -20.58431 -19.63819 -18.92219 -17.40578 -17.08118 -16.60696 -16.32494 -16.01774 -15.72532 -15.34710 -15.06985 -14.80558 -14.33203 -14.13827 -13.84332 -13.81175 -13.46195 -13.20027 -13.06972 -12.87934 -12.76570 -12.54140 -12.37247 -12.22788 -12.19797 -11.82480 -11.55582 -11.21767 -11.13401 -11.02014 -10.94616 -10.90148 -10.68613 -10.47609 -10.28869 -10.26910 -9.60438 -9.25286 -9.07265 -8.78501 -8.67915 -8.59060 -8.34745 -6.19002 -4.25218 1.80995 2.56111 3.24604 3.36674 3.40305 3.58834 3.80523 4.16415 4.36193 4.39452 4.41421 4.57628 4.72525 4.76240 4.83943 4.92795 4.97384 5.13986 5.15029 5.20243 5.23819 5.45982 5.50851 5.54870 5.62229 5.63141 5.69940 5.82033 5.87690 5.91855 5.94872 5.99999 6.00995 6.08341 6.14037 6.29595 6.36981 6.38768 6.63623 6.79659 6.96988 7.02661 7.32009 7.46076 7.62518 7.76717 8.17174 8.36278 8.52805 8.81288 9.43126 10.91708 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016789 B = 0.003146 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.376252 B = 8897.338083 C = 9262.162938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.107 3.893 3 H 0.098 0.902 4 O -0.564 6.564 5 C -0.165 4.165 6 C 0.140 3.860 7 H 0.087 0.913 8 C -0.128 4.128 9 C -0.137 4.137 10 C 0.101 3.899 11 N -0.594 5.594 12 C 0.523 3.477 13 O -0.514 6.514 14 C 0.499 3.501 15 O -0.541 6.541 16 N -0.660 5.660 17 C 0.154 3.846 18 C -0.016 4.016 19 C -0.497 4.497 20 H 0.081 0.919 21 C 0.082 3.918 22 N -0.889 5.889 23 Si 0.882 3.118 24 H -0.280 1.280 25 H -0.296 1.296 26 H -0.254 1.254 27 C -0.181 4.181 28 C -0.192 4.192 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.379 0.621 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.421 0.579 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.266 0.734 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.940 19.528 -1.796 20.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.047 3.953 3 H 0.116 0.884 4 O -0.370 6.370 5 C -0.204 4.204 6 C 0.037 3.963 7 H 0.105 0.895 8 C -0.166 4.166 9 C -0.175 4.175 10 C -0.022 4.022 11 N -0.330 5.330 12 C 0.306 3.694 13 O -0.389 6.389 14 C 0.279 3.721 15 O -0.421 6.421 16 N -0.311 5.311 17 C 0.031 3.969 18 C -0.017 4.017 19 C -0.534 4.534 20 H 0.099 0.901 21 C -0.122 4.122 22 N -0.525 5.525 23 Si 0.710 3.290 24 H -0.207 1.207 25 H -0.223 1.223 26 H -0.178 1.178 27 C -0.218 4.218 28 C -0.229 4.229 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.227 0.773 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.088 0.912 41 H 0.260 0.740 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.415 19.962 -1.869 21.051 hybrid contribution 0.272 -1.002 0.670 1.235 sum -6.143 18.960 -1.200 19.967 Atomic orbital electron populations 1.22503 0.96431 1.02824 1.02564 1.21849 0.92757 0.96499 0.84191 0.88386 1.86537 1.77298 1.29526 1.43651 1.22707 0.95636 1.03014 0.99024 1.21586 0.93627 0.91957 0.89105 0.89495 1.22734 0.98161 0.94856 1.00814 1.22863 0.98165 0.98866 0.97609 1.22575 0.97493 0.89450 0.92649 1.48335 1.53582 1.07454 1.23590 1.20082 0.80247 0.81103 0.87969 1.90756 1.41954 1.58739 1.47446 1.19880 0.81724 0.83689 0.86836 1.90651 1.40427 1.60584 1.50400 1.45780 1.57578 1.09381 1.18381 1.21139 0.99787 0.94020 0.81963 1.19611 0.98893 0.90702 0.92540 1.20149 1.01575 1.32438 0.99283 0.90075 1.25013 0.97590 0.94077 0.95531 1.69898 1.22550 1.35377 1.24639 0.86853 0.79902 0.79368 0.82890 1.20666 1.22338 1.17844 1.22992 0.90655 1.03038 1.05112 1.22903 1.00586 1.01433 0.97997 0.92098 0.91660 0.91802 0.77316 0.90847 0.90007 0.89808 0.90528 0.90487 0.89744 0.88154 0.91247 0.73954 0.91556 0.93046 0.92402 0.90832 0.89292 0.89310 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.37 9.54 37.16 0.35 -1.02 16 2 C 0.11 0.91 3.46 -26.73 -0.09 0.82 16 3 H 0.10 0.75 7.23 -51.93 -0.38 0.37 16 4 O -0.56 -5.73 12.73 -35.23 -0.45 -6.18 16 5 C -0.17 -1.70 4.34 -26.73 -0.12 -1.81 16 6 C 0.14 1.60 2.81 -66.95 -0.19 1.41 16 7 H 0.09 1.13 7.69 -51.93 -0.40 0.73 16 8 C -0.13 -1.05 5.43 -24.90 -0.14 -1.19 16 9 C -0.14 -1.18 7.09 -24.58 -0.17 -1.35 16 10 C 0.10 1.20 5.97 -2.53 -0.02 1.18 16 11 N -0.59 -8.35 3.07 -163.52 -0.50 -8.85 16 12 C 0.52 9.18 7.65 -11.58 -0.09 9.09 16 13 O -0.51 -10.02 15.68 5.50 0.09 -9.94 16 14 C 0.50 9.54 7.85 -11.58 -0.09 9.44 16 15 O -0.54 -10.61 13.84 5.50 0.08 -10.53 16 16 N -0.66 -13.37 5.28 -60.73 -0.32 -13.69 16 17 C 0.15 3.16 5.78 -4.04 -0.02 3.14 16 18 C -0.02 -0.36 1.29 -155.66 -0.20 -0.56 16 19 C -0.50 -13.04 8.18 -34.44 -0.28 -13.32 16 20 H 0.08 2.31 7.98 -52.49 -0.42 1.90 16 21 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 22 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 23 Si 0.88 21.23 24.87 -169.99 -4.23 17.00 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.25 -5.78 5.78 56.52 0.33 -5.45 16 27 C -0.18 -3.46 9.88 -26.73 -0.26 -3.72 16 28 C -0.19 -3.88 6.94 -26.73 -0.19 -4.06 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.38 3.13 9.05 45.56 0.41 3.54 16 33 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.08 1.03 6.96 -51.93 -0.36 0.67 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.53 7.75 -51.93 -0.40 0.12 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.10 1.39 6.34 -51.93 -0.33 1.06 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.42 8.93 6.98 -40.82 -0.28 8.65 16 42 H 0.07 1.44 7.74 -51.93 -0.40 1.04 16 43 H 0.05 0.96 7.95 -51.93 -0.41 0.54 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 46 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 47 H 0.09 1.89 6.18 -51.93 -0.32 1.57 16 48 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 380.69 15.07 5.74 5.74 Total: -1.00 -31.06 380.69 -7.57 -38.63 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -7.15 Total: 13.15 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.60 Total: 0.21 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.05 Total: -48.08 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.29 Total: -26.64 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.23 Total: 17.00 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.06 -7.57 -38.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330223472.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.059 kcal (2) G-P(sol) polarization free energy of solvation -31.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds