Wall clock time and date at job start Tue Mar 31 2020 14:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46706 * 2 1 4 4 O 1.42900 * 109.47029 * 240.00143 * 2 1 3 5 5 C 1.52999 * 109.46968 * 119.99822 * 2 1 3 6 6 C 1.53003 * 109.46733 * 182.40906 * 5 2 1 7 7 H 1.08996 * 109.87375 * 302.74649 * 6 5 2 8 8 C 1.54323 * 109.88337 * 63.76553 * 6 5 2 9 9 C 1.55153 * 102.94598 * 141.60735 * 8 6 5 10 10 C 1.54915 * 101.58167 * 324.49722 * 9 8 6 11 11 N 1.47023 * 109.87968 * 181.56865 * 6 5 2 12 12 C 1.34778 * 125.64561 * 61.59814 * 11 6 5 13 13 O 1.21347 * 120.00144 * 4.88235 * 12 11 6 14 14 C 1.49450 * 119.99583 * 184.87903 * 12 11 6 15 15 O 1.21345 * 120.00697 * 355.21949 * 14 12 11 16 16 N 1.34783 * 119.99552 * 175.22073 * 14 12 11 17 17 C 1.46504 * 119.99969 * 185.01066 * 16 14 12 18 18 C 1.52994 * 109.47144 * 185.07724 * 17 16 14 19 19 C 1.50702 * 115.55171 * 39.70540 * 18 17 16 20 20 H 1.08002 * 119.99646 * 273.64282 * 19 18 17 21 21 C 1.37871 * 120.00205 * 93.63766 * 19 18 17 22 22 N 1.31513 * 120.00047 * 183.91083 * 21 19 18 23 23 Si 1.86806 * 119.99942 * 3.91154 * 21 19 18 24 24 H 1.48500 * 109.46960 * 94.35563 * 23 21 19 25 25 H 1.48498 * 109.47194 * 214.35379 * 23 21 19 26 26 H 1.48500 * 109.47079 * 334.35586 * 23 21 19 27 27 C 1.52999 * 117.49903 * 253.99345 * 18 17 16 28 28 C 1.53000 * 117.49793 * 185.37075 * 18 17 16 29 29 H 1.08998 * 109.46706 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46807 * 300.00466 * 1 2 3 31 31 H 1.09002 * 109.46741 * 60.00357 * 1 2 3 32 32 H 0.96700 * 114.00115 * 299.99200 * 4 2 1 33 33 H 1.09000 * 109.46985 * 302.40969 * 5 2 1 34 34 H 1.09001 * 109.47116 * 62.40970 * 5 2 1 35 35 H 1.08998 * 110.72046 * 259.97362 * 8 6 5 36 36 H 1.09006 * 110.72371 * 23.06264 * 8 6 5 37 37 H 1.08998 * 111.00359 * 82.56726 * 9 8 6 38 38 H 1.09000 * 111.00823 * 206.38501 * 9 8 6 39 39 H 1.08998 * 110.36726 * 155.84346 * 10 9 8 40 40 H 1.08995 * 110.36475 * 278.17034 * 10 9 8 41 41 H 0.96998 * 120.00069 * 5.02227 * 16 14 12 42 42 H 1.09000 * 109.46956 * 305.08288 * 17 16 14 43 43 H 1.09000 * 109.46976 * 65.07785 * 17 16 14 44 44 H 0.97006 * 120.00057 * 180.02562 * 22 21 19 45 45 H 1.08997 * 117.50018 * 359.97438 * 27 18 17 46 46 H 1.08995 * 117.49776 * 145.02249 * 27 18 17 47 47 H 1.08999 * 117.50304 * 214.98233 * 28 18 17 48 48 H 1.08999 * 117.50247 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2493 6 6 3.5689 -0.6689 1.2799 7 1 3.9731 -1.1122 0.3699 8 6 4.0415 0.7948 1.4054 9 6 5.2598 0.6860 2.3600 10 6 4.8059 -0.4454 3.3159 11 7 4.0703 -1.3920 2.4577 12 6 3.8871 -2.7029 2.7113 13 8 3.3387 -3.4088 1.8907 14 6 4.3596 -3.2872 4.0032 15 8 4.9845 -2.6025 4.7863 16 7 4.0916 -4.5747 4.2985 17 6 4.4577 -5.1171 5.6092 18 6 4.1619 -6.6179 5.6408 19 6 4.4891 -7.3715 4.3774 20 1 3.7637 -7.4281 3.5792 21 6 5.7144 -7.9886 4.2405 22 7 6.0298 -8.5806 3.1093 23 14 6.9265 -7.9840 5.6619 24 1 6.7684 -9.2317 6.4513 25 1 8.3113 -7.9061 5.1312 26 1 6.6635 -6.8104 6.5329 27 6 2.9464 -7.0816 6.4459 28 6 4.3586 -7.3489 6.9704 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.7211 -1.5952 -1.2329 33 1 1.6418 -0.2329 2.1387 34 1 1.7124 -1.7606 1.2280 35 1 4.3459 1.1864 0.4348 36 1 3.2599 1.4164 1.8425 37 1 6.1590 0.3994 1.8147 38 1 5.4151 1.6182 2.9031 39 1 5.6713 -0.9334 3.7640 40 1 4.1503 -0.0474 4.0904 41 1 3.6565 -5.1421 3.6431 42 1 5.5204 -4.9523 5.7867 43 1 3.8779 -4.6162 6.3845 44 1 6.8917 -9.0151 3.0130 45 1 2.3576 -6.3176 6.9534 46 1 2.3829 -7.9319 6.0618 47 1 4.7243 -8.3750 6.9314 48 1 4.6991 -6.7607 7.8226 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330223472.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:02 Heat of formation + Delta-G solvation = -120.272901 kcal Electronic energy + Delta-G solvation = -28534.510189 eV Core-core repulsion = 24589.181604 eV Total energy + Delta-G solvation = -3945.328585 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.92605 -40.29823 -39.04456 -38.68459 -38.04743 -35.17528 -34.25637 -33.36108 -32.57131 -30.66392 -28.89220 -27.58702 -26.72225 -25.60253 -23.46815 -22.98188 -22.88287 -21.60176 -21.27012 -20.34363 -18.81065 -18.27307 -18.07508 -17.70715 -17.04923 -16.88061 -16.76377 -16.52792 -16.21970 -15.66349 -15.20950 -15.11471 -14.82046 -14.77107 -14.59187 -14.29326 -14.25074 -14.06919 -13.87185 -13.67268 -13.26779 -13.11665 -12.86034 -12.79531 -12.72341 -12.58395 -12.16513 -12.03135 -11.98933 -11.85950 -11.64863 -11.53697 -11.50624 -11.07071 -11.02713 -10.67916 -10.56539 -10.37563 -10.01074 -9.78380 -8.31740 -6.40243 0.35973 1.27472 1.33378 1.39115 1.49876 2.13106 2.34941 2.51258 3.02026 3.14955 3.40950 3.46776 3.58680 3.67526 3.83767 3.97890 3.99671 4.12644 4.22750 4.31809 4.35758 4.38765 4.40308 4.48921 4.53406 4.71236 4.74186 4.79316 4.84106 4.85843 4.92399 4.95197 5.04695 5.06031 5.11460 5.16524 5.18053 5.25697 5.33024 5.33856 5.41435 5.47428 5.66986 6.07340 6.24507 6.32213 6.69159 6.69548 6.76688 6.97833 7.30935 8.82736 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016789 B = 0.003146 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.376252 B = 8897.338083 C = 9262.162938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.110 3.890 3 H 0.116 0.884 4 O -0.580 6.580 5 C -0.157 4.157 6 C 0.131 3.869 7 H 0.066 0.934 8 C -0.117 4.117 9 C -0.126 4.126 10 C 0.092 3.908 11 N -0.586 5.586 12 C 0.517 3.483 13 O -0.546 6.546 14 C 0.498 3.502 15 O -0.545 6.545 16 N -0.671 5.671 17 C 0.161 3.839 18 C -0.045 4.045 19 C -0.486 4.486 20 H 0.040 0.960 21 C 0.024 3.976 22 N -0.943 5.943 23 Si 0.937 3.063 24 H -0.270 1.270 25 H -0.308 1.308 26 H -0.228 1.228 27 C -0.159 4.159 28 C -0.187 4.187 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.383 0.617 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.414 0.586 42 H 0.052 0.948 43 H 0.079 0.921 44 H 0.264 0.736 45 H 0.108 0.892 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.459 22.690 0.248 23.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.051 3.949 3 H 0.134 0.866 4 O -0.387 6.387 5 C -0.196 4.196 6 C 0.029 3.971 7 H 0.084 0.916 8 C -0.154 4.154 9 C -0.164 4.164 10 C -0.029 4.029 11 N -0.320 5.320 12 C 0.300 3.700 13 O -0.424 6.424 14 C 0.278 3.722 15 O -0.425 6.425 16 N -0.321 5.321 17 C 0.038 3.962 18 C -0.046 4.046 19 C -0.523 4.523 20 H 0.058 0.942 21 C -0.175 4.175 22 N -0.582 5.582 23 Si 0.762 3.238 24 H -0.196 1.196 25 H -0.236 1.236 26 H -0.150 1.150 27 C -0.196 4.196 28 C -0.224 4.224 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.232 0.768 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.091 0.909 38 H 0.134 0.866 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.251 0.749 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.073 0.927 45 H 0.126 0.874 46 H 0.100 0.900 47 H 0.095 0.905 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.945 23.182 0.206 24.201 hybrid contribution 0.359 -1.940 -0.025 1.973 sum -6.586 21.241 0.182 22.240 Atomic orbital electron populations 1.22468 0.95441 1.02608 1.03452 1.21943 0.93507 0.96741 0.82696 0.86591 1.86509 1.77759 1.30083 1.44383 1.22638 0.94709 1.01656 1.00569 1.21857 0.94436 0.93712 0.87123 0.91591 1.22766 0.98501 0.92373 1.01797 1.22862 0.97978 0.98628 0.96956 1.22774 0.96743 0.89834 0.93585 1.48504 1.52386 1.06570 1.24498 1.19863 0.80563 0.82349 0.87275 1.90740 1.43753 1.59814 1.48090 1.20171 0.81301 0.83295 0.87414 1.90639 1.40493 1.60588 1.50770 1.45850 1.57984 1.09861 1.18388 1.21065 0.99388 0.93018 0.82731 1.19504 1.02366 0.91188 0.91566 1.20295 1.00222 1.31644 1.00152 0.94169 1.25840 0.99704 0.94147 0.97779 1.70050 1.23223 1.37790 1.27131 0.85972 0.76780 0.80685 0.80330 1.19582 1.23616 1.15025 1.23028 0.90207 1.03180 1.03175 1.22989 1.01200 1.00841 0.97369 0.92924 0.90411 0.91222 0.76792 0.89715 0.92961 0.88282 0.88133 0.90907 0.86627 0.90335 0.90023 0.74872 0.92942 0.90345 0.92669 0.87415 0.90035 0.90525 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 9.54 71.98 0.69 -1.71 16 2 C 0.11 1.71 3.46 30.60 0.11 1.82 16 3 H 0.12 1.40 7.23 -2.39 -0.02 1.38 16 4 O -0.58 -11.48 12.73 -148.98 -1.90 -13.37 16 5 C -0.16 -3.08 4.34 30.60 0.13 -2.95 16 6 C 0.13 2.85 2.81 45.34 0.13 2.98 16 7 H 0.07 1.74 7.69 -2.39 -0.02 1.72 16 8 C -0.12 -1.54 5.43 31.78 0.17 -1.37 16 9 C -0.13 -1.80 7.09 31.99 0.23 -1.57 16 10 C 0.09 2.05 5.97 86.86 0.52 2.57 16 11 N -0.59 -16.27 3.07 -789.61 -2.42 -18.69 16 12 C 0.52 18.63 7.65 87.27 0.67 19.29 16 13 O -0.55 -22.43 15.68 -3.24 -0.05 -22.48 16 14 C 0.50 19.20 7.85 87.27 0.68 19.88 16 15 O -0.55 -21.08 13.84 -3.23 -0.04 -21.13 16 16 N -0.67 -27.52 5.28 -464.41 -2.45 -29.97 16 17 C 0.16 6.39 5.78 86.38 0.50 6.89 16 18 C -0.05 -1.93 1.29 -52.93 -0.07 -1.99 16 19 C -0.49 -26.20 8.18 25.60 0.21 -25.99 16 20 H 0.04 2.43 7.98 -2.91 -0.02 2.41 16 21 C 0.02 1.34 5.47 84.65 0.46 1.81 16 22 N -0.94 -58.42 13.96 21.44 0.30 -58.12 16 23 Si 0.94 43.86 24.87 68.60 1.71 45.56 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.31 -14.93 7.11 99.48 0.71 -14.22 16 26 H -0.23 -9.57 5.78 99.48 0.58 -9.00 16 27 C -0.16 -5.68 9.88 30.59 0.30 -5.37 16 28 C -0.19 -6.99 6.94 30.59 0.21 -6.78 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.38 6.57 9.05 -74.06 -0.67 5.90 16 33 H 0.08 1.46 8.10 -2.39 -0.02 1.44 16 34 H 0.05 1.35 6.96 -2.39 -0.02 1.34 16 35 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.10 0.91 7.75 -2.38 -0.02 0.89 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 2.12 6.34 -2.39 -0.02 2.10 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.41 18.35 6.98 -92.71 -0.65 17.71 16 42 H 0.05 2.21 7.74 -2.39 -0.02 2.19 16 43 H 0.08 2.68 7.95 -2.39 -0.02 2.66 16 44 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 45 H 0.11 3.15 8.08 -2.39 -0.02 3.13 16 46 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 47 H 0.08 3.08 6.18 -2.39 -0.01 3.07 16 48 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -70.67 380.69 -0.39 -71.06 By element: Atomic # 1 Polarization: 40.12 SS G_CDS: -0.47 Total: 39.64 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 4.94 Total: 7.50 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -4.57 Total: -106.79 kcal Atomic # 8 Polarization: -54.98 SS G_CDS: -1.99 Total: -56.98 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.71 Total: 45.56 kcal Total: -70.67 -0.39 -71.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330223472.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.210 kcal (2) G-P(sol) polarization free energy of solvation -70.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds