Wall clock time and date at job start Tue Mar 31 2020 14:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00164 * 2 1 4 4 N 1.46494 * 109.46926 * 124.99713 * 3 2 1 5 5 C 1.34776 * 120.00410 * 79.84961 * 4 3 2 6 6 O 1.21347 * 120.00748 * 183.50719 * 5 4 3 7 7 C 1.49456 * 119.99590 * 3.51215 * 5 4 3 8 8 O 1.21340 * 120.00118 * 4.18213 * 7 5 4 9 9 N 1.34777 * 119.99656 * 184.18350 * 7 5 4 10 10 C 1.46500 * 120.00050 * 185.01762 * 9 7 5 11 11 C 1.52994 * 109.47357 * 184.86849 * 10 9 7 12 12 C 1.50702 * 115.54972 * 304.86287 * 11 10 9 13 13 H 1.08004 * 119.99612 * 95.20881 * 12 11 10 14 14 C 1.37874 * 120.00427 * 274.92885 * 12 11 10 15 15 N 1.31521 * 119.99742 * 355.37562 * 14 12 11 16 16 Si 1.86800 * 120.00205 * 175.37139 * 14 12 11 17 17 H 1.48497 * 109.47169 * 90.00242 * 16 14 12 18 18 H 1.48501 * 109.46856 * 210.00317 * 16 14 12 19 19 H 1.48496 * 109.46904 * 329.99928 * 16 14 12 20 20 C 1.53001 * 117.50041 * 90.53993 * 11 10 9 21 21 C 1.53006 * 117.49921 * 159.19644 * 11 10 9 22 22 C 1.46500 * 120.00073 * 259.84708 * 4 3 2 23 23 H 1.08998 * 109.47463 * 180.02562 * 22 4 3 24 24 C 1.53001 * 109.47022 * 300.00172 * 22 4 3 25 25 C 1.52996 * 109.47110 * 60.00084 * 22 4 3 26 26 O 1.42903 * 109.47345 * 295.00179 * 25 22 4 27 27 C 1.42896 * 114.00055 * 179.97438 * 26 25 22 28 28 H 1.08000 * 119.99835 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.00275 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.99184 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47007 * 4.99205 * 3 2 1 32 32 H 1.09000 * 109.46629 * 244.99172 * 3 2 1 33 33 H 0.96995 * 120.00355 * 5.01648 * 9 7 5 34 34 H 1.09007 * 109.47019 * 64.86637 * 10 9 7 35 35 H 1.08998 * 109.47044 * 304.86881 * 10 9 7 36 36 H 0.97001 * 119.99758 * 184.99648 * 15 14 12 37 37 H 1.09006 * 117.49751 * 215.00437 * 20 11 10 38 38 H 1.08997 * 117.49835 * 0.02562 * 20 11 10 39 39 H 1.08993 * 117.49901 * 359.97438 * 21 11 10 40 40 H 1.09000 * 117.49873 * 144.97238 * 21 11 10 41 41 H 1.08999 * 109.47084 * 179.97438 * 24 22 4 42 42 H 1.09000 * 109.47506 * 299.99604 * 24 22 4 43 43 H 1.09002 * 109.47119 * 59.99918 * 24 22 4 44 44 H 1.09005 * 109.46936 * 55.00567 * 25 22 4 45 45 H 1.08998 * 109.47230 * 175.00181 * 25 22 4 46 46 H 1.09000 * 109.47166 * 60.00141 * 27 26 25 47 47 H 1.08998 * 109.47165 * 180.02562 * 27 26 25 48 48 H 1.09005 * 109.47039 * 299.99948 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 4.1737 0.6859 1.0492 6 8 4.9164 0.6544 2.0083 7 6 4.5677 0.0085 -0.2235 8 8 3.8612 0.1038 -1.2054 9 7 5.7077 -0.7082 -0.2804 10 6 6.1503 -1.2803 -1.5544 11 6 7.3944 -2.1401 -1.3225 12 6 8.5456 -1.4470 -0.6403 13 1 8.6689 -1.5307 0.4294 14 6 9.4446 -0.7108 -1.3823 15 7 9.3513 -0.6874 -2.6940 16 14 10.7952 0.2536 -0.5247 17 1 11.9986 -0.6038 -0.3774 18 1 11.1370 1.4520 -1.3325 19 1 10.3234 0.6795 0.8174 20 6 7.1806 -3.6236 -1.0153 21 6 7.7306 -3.1955 -2.3781 22 6 2.6413 2.0607 2.3524 23 1 3.4502 1.9684 3.0770 24 6 2.4219 3.5378 2.0192 25 6 1.3573 1.4751 2.9433 26 8 0.2718 1.7007 2.0416 27 6 -0.9810 1.1890 2.5007 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.3586 2.1316 0.0894 32 1 2.6214 1.4024 -0.9313 33 1 6.2350 -0.8452 0.5220 34 1 6.3891 -0.4760 -2.2504 35 1 5.3547 -1.8975 -1.9715 36 1 10.0255 -0.2295 -3.2201 37 1 7.8726 -4.0983 -0.3195 38 1 6.1537 -3.9871 -0.9788 39 1 7.0652 -3.2775 -3.2375 40 1 8.7844 -3.3882 -2.5793 41 1 2.1592 4.0800 2.9275 42 1 3.3367 3.9551 1.5982 43 1 1.6131 3.6305 1.2943 44 1 1.4843 0.4036 3.0982 45 1 1.1434 1.9572 3.8972 46 1 -1.2436 1.6649 3.4455 47 1 -1.7528 1.3999 1.7604 48 1 -0.9022 0.1116 2.6460 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331025955.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:06 Heat of formation + Delta-G solvation = -52.257034 kcal Electronic energy + Delta-G solvation = -28958.490941 eV Core-core repulsion = 25016.111745 eV Total energy + Delta-G solvation = -3942.379196 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.64033 -38.76277 -37.83663 -36.78710 -36.10433 -33.85413 -33.33439 -31.97862 -31.15884 -27.61979 -27.08125 -26.53076 -25.57718 -25.31647 -23.72234 -21.19634 -20.60898 -20.19437 -19.62906 -18.89323 -17.49945 -17.15872 -16.40061 -16.13822 -16.02282 -15.86474 -15.18479 -15.06802 -14.71865 -14.60240 -14.20914 -13.94606 -13.73821 -13.35114 -13.22593 -13.03708 -12.80952 -12.68190 -12.34536 -12.15150 -11.91131 -11.72029 -11.61204 -11.39805 -11.24365 -11.01250 -10.95583 -10.93223 -10.87960 -10.51847 -10.23615 -9.86351 -9.57683 -9.26098 -9.08194 -8.91632 -8.61656 -8.53365 -8.37524 -8.10466 -6.08990 -4.18940 1.83335 2.30336 2.81930 3.27041 3.35021 3.39332 3.55772 3.66257 3.97728 4.36099 4.62586 4.83781 4.90736 5.02582 5.11361 5.15815 5.16992 5.19044 5.21881 5.32053 5.34534 5.40784 5.43500 5.57446 5.71666 5.80555 5.97361 5.99823 6.05255 6.16529 6.28147 6.42604 6.43011 6.48197 6.68776 6.76627 6.81276 6.90612 6.97640 7.08208 7.11831 7.23527 7.32272 7.50375 7.80704 7.85038 8.22305 8.31382 8.60534 8.83353 9.49182 10.97906 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.018015 B = 0.003354 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.907571 B = 8347.269764 C = 9228.758552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.141 4.141 3 C 0.127 3.873 4 N -0.577 5.577 5 C 0.507 3.493 6 O -0.524 6.524 7 C 0.495 3.505 8 O -0.531 6.531 9 N -0.664 5.664 10 C 0.160 3.840 11 C 0.022 3.978 12 C -0.502 4.502 13 H 0.062 0.938 14 C 0.075 3.925 15 N -0.875 5.875 16 Si 0.889 3.111 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.271 1.271 20 C -0.211 4.211 21 C -0.140 4.140 22 C 0.136 3.864 23 H 0.114 0.886 24 C -0.157 4.157 25 C 0.055 3.945 26 O -0.376 6.376 27 C 0.034 3.966 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.414 0.586 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.262 0.738 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.035 0.965 47 H 0.084 0.916 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.641 4.739 8.685 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.160 4.160 3 C 0.006 3.994 4 N -0.310 5.310 5 C 0.290 3.710 6 O -0.400 6.400 7 C 0.275 3.725 8 O -0.411 6.411 9 N -0.313 5.313 10 C 0.038 3.962 11 C 0.021 3.979 12 C -0.539 4.539 13 H 0.080 0.920 14 C -0.129 4.129 15 N -0.510 5.510 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.195 1.195 20 C -0.248 4.248 21 C -0.178 4.178 22 C 0.033 3.967 23 H 0.131 0.869 24 C -0.215 4.215 25 C -0.023 4.023 26 O -0.295 6.295 27 C -0.063 4.063 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.137 0.863 33 H 0.251 0.749 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.054 0.946 47 H 0.102 0.898 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -18.610 5.031 8.144 20.928 hybrid contribution 0.934 0.175 0.980 1.365 sum -17.676 5.206 9.124 20.562 Atomic orbital electron populations 1.23735 0.95811 1.00954 1.01765 1.23066 0.95848 0.98449 0.98635 1.21263 0.92218 0.95903 0.90042 1.47846 1.16841 1.50092 1.16255 1.20584 0.81734 0.79773 0.88920 1.90732 1.51299 1.59750 1.38194 1.19891 0.82993 0.81316 0.88330 1.90606 1.51810 1.61297 1.37378 1.45896 1.21989 1.48969 1.14490 1.21127 0.94870 0.97165 0.83060 1.19021 0.93474 0.85643 0.99753 1.20364 1.09365 1.30606 0.93613 0.92011 1.24979 0.97417 0.95709 0.94825 1.69991 1.34205 1.42432 1.04411 0.86628 0.82004 0.79810 0.79901 1.20656 1.21164 1.19548 1.23061 0.99233 1.01617 1.00873 1.22462 1.00295 1.04768 0.90315 1.21262 0.95957 0.91914 0.87574 0.86853 1.22054 1.02765 0.94082 1.02598 1.22849 0.87006 0.99949 0.92459 1.87958 1.16517 1.80255 1.44769 1.22684 0.86186 0.98023 0.99400 0.88255 0.89552 0.88338 0.89528 0.86255 0.74874 0.90993 0.93463 0.92865 0.90289 0.91687 0.91764 0.89430 0.91528 0.92100 0.91114 0.92884 0.92376 0.94641 0.89768 0.94131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 11.45 29.01 0.33 -1.62 16 2 C -0.14 -1.82 8.18 -36.03 -0.29 -2.11 16 3 C 0.13 1.67 4.48 -5.20 -0.02 1.65 16 4 N -0.58 -8.04 2.38 -167.98 -0.40 -8.44 16 5 C 0.51 8.72 7.63 -11.58 -0.09 8.64 16 6 O -0.52 -9.98 15.83 5.50 0.09 -9.89 16 7 C 0.49 9.40 7.65 -11.58 -0.09 9.31 16 8 O -0.53 -10.38 12.26 5.51 0.07 -10.32 16 9 N -0.66 -13.54 5.40 -60.73 -0.33 -13.86 16 10 C 0.16 3.55 5.59 -4.04 -0.02 3.52 16 11 C 0.02 0.51 1.62 -155.66 -0.25 0.26 16 12 C -0.50 -12.97 8.10 -34.44 -0.28 -13.25 16 13 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 14 C 0.07 1.99 5.43 -17.82 -0.10 1.89 16 15 N -0.87 -23.99 12.65 55.43 0.70 -23.29 16 16 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 C -0.21 -4.41 9.93 -26.69 -0.27 -4.67 16 21 C -0.14 -3.18 9.17 -26.69 -0.24 -3.42 16 22 C 0.14 1.54 3.15 -67.93 -0.21 1.33 16 23 H 0.11 1.38 6.90 -51.93 -0.36 1.03 16 24 C -0.16 -1.51 8.99 37.16 0.33 -1.18 16 25 C 0.05 0.52 5.50 37.16 0.20 0.72 16 26 O -0.38 -3.45 5.08 -35.23 -0.18 -3.63 16 27 C 0.03 0.23 9.17 101.05 0.93 1.16 16 28 H 0.10 0.95 6.24 -52.49 -0.33 0.62 16 29 H 0.09 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.10 1.46 7.76 -52.48 -0.41 1.06 16 31 H 0.09 1.01 4.99 -51.93 -0.26 0.75 16 32 H 0.12 1.84 5.40 -51.93 -0.28 1.56 16 33 H 0.41 8.57 7.46 -40.82 -0.30 8.27 16 34 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 35 H 0.05 1.00 8.05 -51.93 -0.42 0.58 16 36 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 37 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.68 6.14 -51.93 -0.32 0.36 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.08 0.49 7.73 -51.93 -0.40 0.09 16 48 H 0.04 0.29 8.06 -51.93 -0.42 -0.13 16 LS Contribution 384.85 15.07 5.80 5.80 Total: -1.00 -28.32 384.85 -7.04 -35.36 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -7.69 Total: 10.28 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -0.07 Total: 2.22 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.03 Total: -45.59 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.02 Total: -23.83 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.32 -7.04 -35.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331025955.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.901 kcal (2) G-P(sol) polarization free energy of solvation -28.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds