Wall clock time and date at job start Tue Mar 31 2020 14:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00164 * 2 1 4 4 N 1.46494 * 109.46926 * 124.99713 * 3 2 1 5 5 C 1.34776 * 120.00410 * 79.84961 * 4 3 2 6 6 O 1.21347 * 120.00748 * 183.50719 * 5 4 3 7 7 C 1.49456 * 119.99590 * 3.51215 * 5 4 3 8 8 O 1.21340 * 120.00118 * 4.18213 * 7 5 4 9 9 N 1.34777 * 119.99656 * 184.18350 * 7 5 4 10 10 C 1.46500 * 120.00050 * 185.01762 * 9 7 5 11 11 C 1.52994 * 109.47357 * 184.86849 * 10 9 7 12 12 C 1.50702 * 115.54972 * 304.86287 * 11 10 9 13 13 H 1.08004 * 119.99612 * 95.20881 * 12 11 10 14 14 C 1.37874 * 120.00427 * 274.92885 * 12 11 10 15 15 N 1.31521 * 119.99742 * 355.37562 * 14 12 11 16 16 Si 1.86800 * 120.00205 * 175.37139 * 14 12 11 17 17 H 1.48497 * 109.47169 * 90.00242 * 16 14 12 18 18 H 1.48501 * 109.46856 * 210.00317 * 16 14 12 19 19 H 1.48496 * 109.46904 * 329.99928 * 16 14 12 20 20 C 1.53001 * 117.50041 * 90.53993 * 11 10 9 21 21 C 1.53006 * 117.49921 * 159.19644 * 11 10 9 22 22 C 1.46500 * 120.00073 * 259.84708 * 4 3 2 23 23 H 1.08998 * 109.47463 * 180.02562 * 22 4 3 24 24 C 1.53001 * 109.47022 * 300.00172 * 22 4 3 25 25 C 1.52996 * 109.47110 * 60.00084 * 22 4 3 26 26 O 1.42903 * 109.47345 * 295.00179 * 25 22 4 27 27 C 1.42896 * 114.00055 * 179.97438 * 26 25 22 28 28 H 1.08000 * 119.99835 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.00275 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.99184 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47007 * 4.99205 * 3 2 1 32 32 H 1.09000 * 109.46629 * 244.99172 * 3 2 1 33 33 H 0.96995 * 120.00355 * 5.01648 * 9 7 5 34 34 H 1.09007 * 109.47019 * 64.86637 * 10 9 7 35 35 H 1.08998 * 109.47044 * 304.86881 * 10 9 7 36 36 H 0.97001 * 119.99758 * 184.99648 * 15 14 12 37 37 H 1.09006 * 117.49751 * 215.00437 * 20 11 10 38 38 H 1.08997 * 117.49835 * 0.02562 * 20 11 10 39 39 H 1.08993 * 117.49901 * 359.97438 * 21 11 10 40 40 H 1.09000 * 117.49873 * 144.97238 * 21 11 10 41 41 H 1.08999 * 109.47084 * 179.97438 * 24 22 4 42 42 H 1.09000 * 109.47506 * 299.99604 * 24 22 4 43 43 H 1.09002 * 109.47119 * 59.99918 * 24 22 4 44 44 H 1.09005 * 109.46936 * 55.00567 * 25 22 4 45 45 H 1.08998 * 109.47230 * 175.00181 * 25 22 4 46 46 H 1.09000 * 109.47166 * 60.00141 * 27 26 25 47 47 H 1.08998 * 109.47165 * 180.02562 * 27 26 25 48 48 H 1.09005 * 109.47039 * 299.99948 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 4.1737 0.6859 1.0492 6 8 4.9164 0.6544 2.0083 7 6 4.5677 0.0085 -0.2235 8 8 3.8612 0.1038 -1.2054 9 7 5.7077 -0.7082 -0.2804 10 6 6.1503 -1.2803 -1.5544 11 6 7.3944 -2.1401 -1.3225 12 6 8.5456 -1.4470 -0.6403 13 1 8.6689 -1.5307 0.4294 14 6 9.4446 -0.7108 -1.3823 15 7 9.3513 -0.6874 -2.6940 16 14 10.7952 0.2536 -0.5247 17 1 11.9986 -0.6038 -0.3774 18 1 11.1370 1.4520 -1.3325 19 1 10.3234 0.6795 0.8174 20 6 7.1806 -3.6236 -1.0153 21 6 7.7306 -3.1955 -2.3781 22 6 2.6413 2.0607 2.3524 23 1 3.4502 1.9684 3.0770 24 6 2.4219 3.5378 2.0192 25 6 1.3573 1.4751 2.9433 26 8 0.2718 1.7007 2.0416 27 6 -0.9810 1.1890 2.5007 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.3586 2.1316 0.0894 32 1 2.6214 1.4024 -0.9313 33 1 6.2350 -0.8452 0.5220 34 1 6.3891 -0.4760 -2.2504 35 1 5.3547 -1.8975 -1.9715 36 1 10.0255 -0.2295 -3.2201 37 1 7.8726 -4.0983 -0.3195 38 1 6.1537 -3.9871 -0.9788 39 1 7.0652 -3.2775 -3.2375 40 1 8.7844 -3.3882 -2.5793 41 1 2.1592 4.0800 2.9275 42 1 3.3367 3.9551 1.5982 43 1 1.6131 3.6305 1.2943 44 1 1.4843 0.4036 3.0982 45 1 1.1434 1.9572 3.8972 46 1 -1.2436 1.6649 3.4455 47 1 -1.7528 1.3999 1.7604 48 1 -0.9022 0.1116 2.6460 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331025955.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:05 Heat of formation + Delta-G solvation = -68.913389 kcal Electronic energy + Delta-G solvation = -28959.213215 eV Core-core repulsion = 25016.111745 eV Total energy + Delta-G solvation = -3943.101470 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.96591 -40.00967 -38.96475 -38.49664 -37.19484 -34.99549 -34.74023 -33.97943 -32.18120 -28.74134 -28.26574 -27.51105 -27.39993 -26.25798 -25.05780 -22.93692 -21.85470 -21.40246 -21.17714 -20.23433 -18.88011 -18.33733 -17.95480 -17.26654 -17.10192 -16.95869 -16.69223 -16.29880 -16.20755 -16.00542 -15.55026 -15.14976 -15.09901 -14.80485 -14.45554 -14.22171 -13.96416 -13.78845 -13.56829 -13.47874 -13.17576 -13.02274 -12.94959 -12.83640 -12.62401 -12.38847 -12.37640 -12.21125 -12.01656 -11.92303 -11.78821 -11.40251 -10.98569 -10.63961 -10.46755 -10.40333 -10.11937 -10.04135 -9.94057 -9.72858 -8.11415 -6.25114 0.39424 1.22061 1.39749 1.43716 1.51990 1.63932 2.19134 2.40952 2.62717 2.92491 3.15970 3.35710 3.56855 3.83281 4.02241 4.13506 4.20327 4.28894 4.33221 4.47157 4.50328 4.52555 4.61530 4.63917 4.67528 4.68296 4.70708 4.85151 4.90349 4.97113 4.98209 5.01039 5.03740 5.13497 5.27340 5.31555 5.38315 5.44500 5.53718 5.68309 5.76282 5.86454 5.98327 6.02256 6.28798 6.34807 6.39789 6.76569 6.82168 7.04723 7.44808 8.95058 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.018015 B = 0.003354 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.907571 B = 8347.269764 C = 9228.758552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.170 4.170 3 C 0.133 3.867 4 N -0.563 5.563 5 C 0.506 3.494 6 O -0.549 6.549 7 C 0.493 3.507 8 O -0.537 6.537 9 N -0.670 5.670 10 C 0.177 3.823 11 C -0.002 4.002 12 C -0.508 4.508 13 H 0.057 0.943 14 C 0.031 3.969 15 N -0.902 5.902 16 Si 0.943 3.057 17 H -0.275 1.275 18 H -0.288 1.288 19 H -0.270 1.270 20 C -0.183 4.183 21 C -0.145 4.145 22 C 0.128 3.872 23 H 0.103 0.897 24 C -0.149 4.149 25 C 0.063 3.937 26 O -0.387 6.387 27 C 0.029 3.971 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.412 0.588 34 H 0.039 0.961 35 H 0.056 0.944 36 H 0.260 0.740 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.040 0.960 45 H 0.084 0.916 46 H 0.048 0.952 47 H 0.098 0.902 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.010 5.345 10.060 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.189 4.189 3 C 0.013 3.987 4 N -0.295 5.295 5 C 0.289 3.711 6 O -0.427 6.427 7 C 0.274 3.726 8 O -0.417 6.417 9 N -0.320 5.320 10 C 0.054 3.946 11 C -0.003 4.003 12 C -0.546 4.546 13 H 0.075 0.925 14 C -0.171 4.171 15 N -0.539 5.539 16 Si 0.770 3.230 17 H -0.200 1.200 18 H -0.214 1.214 19 H -0.195 1.195 20 C -0.220 4.220 21 C -0.183 4.183 22 C 0.026 3.974 23 H 0.121 0.879 24 C -0.207 4.207 25 C -0.015 4.015 26 O -0.307 6.307 27 C -0.067 4.067 28 H 0.134 0.866 29 H 0.118 0.882 30 H 0.092 0.908 31 H 0.126 0.874 32 H 0.112 0.888 33 H 0.249 0.751 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.058 0.942 45 H 0.102 0.898 46 H 0.067 0.933 47 H 0.116 0.884 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -21.027 5.647 9.527 23.765 hybrid contribution 1.503 -0.003 0.561 1.604 sum -19.524 5.644 10.087 22.689 Atomic orbital electron populations 1.23916 0.94782 1.02332 0.97825 1.22848 0.96644 0.97085 1.02326 1.21191 0.91917 0.97049 0.88580 1.47990 1.15555 1.48588 1.17407 1.20218 0.82780 0.80339 0.87797 1.90716 1.52353 1.61147 1.38497 1.20291 0.82345 0.80785 0.89149 1.90614 1.51868 1.61201 1.37999 1.45832 1.22669 1.49831 1.13690 1.20766 0.94649 0.95943 0.83279 1.19073 0.93475 0.86919 1.00788 1.20615 1.09980 1.30473 0.93516 0.92487 1.25609 0.99472 0.96621 0.95355 1.70087 1.34955 1.43465 1.05390 0.85776 0.79938 0.78529 0.78798 1.20045 1.21370 1.19496 1.23050 1.00440 0.99298 0.99250 1.22376 0.99398 1.05055 0.91491 1.21543 0.96859 0.92891 0.86126 0.87892 1.22008 1.02204 0.92687 1.03799 1.22718 0.86232 0.99237 0.93264 1.87914 1.17149 1.80452 1.45139 1.22838 0.85319 0.97922 1.00603 0.86564 0.88243 0.90811 0.87447 0.88800 0.75109 0.94253 0.92571 0.93077 0.90029 0.89287 0.90652 0.91617 0.89069 0.93428 0.90769 0.94166 0.89793 0.93336 0.88366 0.94435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 11.45 67.78 0.78 -2.01 16 2 C -0.17 -4.21 8.18 25.64 0.21 -4.00 16 3 C 0.13 3.41 4.48 85.63 0.38 3.79 16 4 N -0.56 -15.48 2.38 -803.74 -1.92 -17.40 16 5 C 0.51 17.70 7.63 87.27 0.67 18.37 16 6 O -0.55 -21.26 15.83 -3.24 -0.05 -21.31 16 7 C 0.49 19.19 7.65 87.27 0.67 19.86 16 8 O -0.54 -21.49 12.26 -3.21 -0.04 -21.52 16 9 N -0.67 -27.99 5.40 -464.42 -2.51 -30.50 16 10 C 0.18 7.98 5.59 86.38 0.48 8.46 16 11 C 0.00 -0.09 1.62 -52.93 -0.09 -0.17 16 12 C -0.51 -26.61 8.10 25.60 0.21 -26.40 16 13 H 0.06 2.97 7.82 -2.91 -0.02 2.95 16 14 C 0.03 1.65 5.43 84.65 0.46 2.11 16 15 N -0.90 -50.54 12.65 21.45 0.27 -50.27 16 16 Si 0.94 43.24 29.54 68.60 2.03 45.27 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 18 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 20 C -0.18 -7.50 9.93 30.62 0.30 -7.19 16 21 C -0.14 -6.59 9.17 30.62 0.28 -6.31 16 22 C 0.13 2.72 3.15 44.99 0.14 2.86 16 23 H 0.10 2.44 6.90 -2.39 -0.02 2.43 16 24 C -0.15 -2.56 8.99 71.98 0.65 -1.91 16 25 C 0.06 1.04 5.50 71.98 0.40 1.44 16 26 O -0.39 -5.90 5.08 -148.98 -0.76 -6.66 16 27 C 0.03 0.30 9.17 113.37 1.04 1.34 16 28 H 0.12 1.78 6.24 -2.91 -0.02 1.76 16 29 H 0.10 1.61 8.06 -2.91 -0.02 1.58 16 30 H 0.07 2.21 7.76 -2.91 -0.02 2.19 16 31 H 0.11 2.28 4.99 -2.39 -0.01 2.27 16 32 H 0.09 2.92 5.40 -2.42 -0.01 2.91 16 33 H 0.41 17.49 7.46 -92.71 -0.69 16.79 16 34 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.06 2.39 8.05 -2.39 -0.02 2.37 16 36 H 0.26 14.05 8.32 -92.71 -0.77 13.28 16 37 H 0.08 3.29 8.14 -2.38 -0.02 3.27 16 38 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 39 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 43 H 0.07 1.23 6.14 -2.39 -0.01 1.22 16 44 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.10 0.75 7.73 -2.39 -0.02 0.73 16 48 H 0.04 0.42 8.06 -2.38 -0.02 0.40 16 Total: -1.00 -61.70 384.85 3.87 -57.84 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.26 Total: 34.32 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 6.58 Total: 10.24 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -4.15 Total: -98.17 kcal Atomic # 8 Polarization: -48.65 SS G_CDS: -0.85 Total: -49.49 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -61.70 3.87 -57.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331025955.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.078 kcal (2) G-P(sol) polarization free energy of solvation -61.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds