Wall clock time and date at job start Tue Mar 31 2020 15:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.46843 * 2 1 4 4 C 1.37103 * 120.00041 * 271.06648 * 3 2 1 5 5 H 1.08006 * 119.99761 * 180.47451 * 4 3 2 6 6 C 1.38943 * 120.00333 * 0.47359 * 4 3 2 7 7 N 1.31417 * 119.99446 * 31.43618 * 6 4 3 8 8 Si 1.86800 * 120.00524 * 211.43401 * 6 4 3 9 9 H 1.48502 * 109.46786 * 94.99466 * 8 6 4 10 10 H 1.48496 * 109.47205 * 214.99785 * 8 6 4 11 11 H 1.48501 * 109.46930 * 334.99870 * 8 6 4 12 12 C 1.34778 * 120.00001 * 91.07059 * 3 2 1 13 13 O 1.21292 * 120.00158 * 185.97748 * 12 3 2 14 14 C 1.50695 * 119.99738 * 5.98022 * 12 3 2 15 15 C 1.55701 * 119.15956 * 193.24835 * 14 12 3 16 16 C 1.57872 * 80.86521 * 161.44849 * 15 14 12 17 17 C 1.54874 * 119.93048 * 291.75718 * 14 12 3 18 18 C 1.56742 * 106.12549 * 58.47648 * 16 15 14 19 19 N 1.49191 * 99.23794 * 319.02090 * 18 16 15 20 20 C 1.34779 * 129.44432 * 180.10910 * 19 18 16 21 21 O 1.21515 * 119.99713 * 184.79286 * 20 19 18 22 22 O 1.34634 * 119.99830 * 4.51741 * 20 19 18 23 23 C 1.45197 * 116.99768 * 174.77173 * 22 20 19 24 24 C 1.53006 * 109.47376 * 61.91893 * 23 22 20 25 25 C 1.52997 * 109.47366 * 181.91828 * 23 22 20 26 26 C 1.53004 * 109.47374 * 301.91832 * 23 22 20 27 27 H 1.09002 * 109.46821 * 174.15694 * 1 2 3 28 28 H 1.09001 * 109.46981 * 294.14580 * 1 2 3 29 29 H 1.08993 * 109.47620 * 54.15138 * 1 2 3 30 30 H 1.09001 * 109.46951 * 240.00470 * 2 1 3 31 31 H 1.09002 * 109.47593 * 120.00377 * 2 1 3 32 32 H 0.97001 * 119.99776 * 180.02562 * 7 6 4 33 33 H 1.08999 * 114.53332 * 275.19729 * 15 14 12 34 34 H 1.09000 * 114.53441 * 48.91111 * 15 14 12 35 35 H 1.09004 * 120.41360 * 197.50013 * 16 15 14 36 36 H 1.08998 * 114.45077 * 311.85903 * 17 14 12 37 37 H 1.08999 * 114.45223 * 85.30359 * 17 14 12 38 38 H 1.08993 * 111.51271 * 201.48712 * 18 16 15 39 39 H 1.09006 * 111.38491 * 76.50032 * 18 16 15 40 40 H 1.09000 * 109.46874 * 54.08042 * 24 23 22 41 41 H 1.08994 * 109.47524 * 174.08120 * 24 23 22 42 42 H 1.09003 * 109.46563 * 294.08263 * 24 23 22 43 43 H 1.09001 * 109.47130 * 59.99843 * 25 23 22 44 44 H 1.09006 * 109.47645 * 180.02562 * 25 23 22 45 45 H 1.09003 * 109.47196 * 300.00151 * 25 23 22 46 46 H 1.08996 * 109.47013 * 66.70690 * 26 23 22 47 47 H 1.09000 * 109.47232 * 186.70516 * 26 23 22 48 48 H 1.08993 * 109.46833 * 306.70770 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2259 2.0349 -1.1871 5 1 2.5932 3.0506 -1.1872 6 6 1.9639 1.3908 -2.3900 7 7 1.0064 0.4934 -2.4598 8 14 2.9726 1.8003 -3.9080 9 1 4.0878 0.8284 -4.0383 10 1 2.1072 1.7253 -5.1124 11 1 3.5247 3.1729 -3.7799 12 6 2.2634 2.0093 1.1670 13 8 2.5630 3.1846 1.1719 14 6 2.1654 1.2512 2.4657 15 6 2.1425 2.0428 3.8063 16 6 1.5535 0.6696 4.3160 17 6 0.7870 0.7570 2.9699 18 6 2.6370 -0.4158 3.9923 19 7 3.0513 0.0555 2.6387 20 6 3.9696 -0.4588 1.7968 21 8 4.2346 0.1182 0.7608 22 8 4.5972 -1.6090 2.1064 23 6 5.4867 -2.1653 1.1027 24 6 6.6253 -1.1807 0.8281 25 6 6.0667 -3.4866 1.6112 26 6 4.7056 -2.4148 -0.1891 27 1 -0.3633 -1.0224 -0.1046 28 1 -0.3633 0.4204 0.9378 29 1 -0.3634 0.6018 -0.8329 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 0.8237 0.0434 -3.2995 33 1 3.1271 2.3011 4.1962 34 1 1.4334 2.8702 3.8313 35 1 1.0191 0.6164 5.2645 36 1 0.0009 1.5117 2.9465 37 1 0.4768 -0.2059 2.5639 38 1 2.2025 -1.4145 3.9508 39 1 3.4654 -0.3738 4.6996 40 1 7.1159 -0.9218 1.7664 41 1 7.3486 -1.6403 0.1547 42 1 6.2223 -0.2786 0.3678 43 1 5.2557 -4.1880 1.8068 44 1 6.7349 -3.9041 0.8579 45 1 6.6232 -3.3089 2.5315 46 1 4.3938 -1.4612 -0.6150 47 1 5.3408 -2.9407 -0.9019 48 1 3.8260 -3.0202 0.0295 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336306951.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:28 Heat of formation + Delta-G solvation = -33.542275 kcal Electronic energy + Delta-G solvation = -31423.638138 eV Core-core repulsion = 27482.070475 eV Total energy + Delta-G solvation = -3941.567663 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.74420 -41.17250 -39.57055 -37.75336 -36.95716 -35.15755 -33.77843 -33.27046 -31.28257 -29.50598 -28.39730 -28.27621 -27.04434 -26.21521 -25.22618 -23.97272 -22.81340 -21.61509 -20.66402 -19.86689 -18.99696 -18.54442 -17.77611 -17.25259 -17.08839 -16.49846 -16.46594 -16.07085 -15.56312 -15.47268 -15.08774 -14.83728 -14.73046 -14.63271 -14.36218 -13.88181 -13.72326 -13.45539 -13.32083 -13.16595 -12.95531 -12.87532 -12.83762 -12.81464 -12.70421 -12.59716 -12.40921 -12.32478 -12.27226 -12.15866 -12.08977 -11.98279 -11.67082 -11.35583 -11.14030 -10.99013 -10.73221 -10.24032 -9.75490 -9.63579 -8.40766 -5.74843 0.82374 1.28503 1.33901 1.44919 1.84300 2.06087 2.23247 2.81493 3.03849 3.15415 3.22533 3.36647 3.58339 3.62841 3.77063 3.79487 3.93798 4.00802 4.37791 4.40689 4.52143 4.57107 4.59024 4.64842 4.72851 4.75215 4.76444 4.81532 4.84847 4.85939 4.88809 4.89281 4.95324 4.99862 5.07423 5.11112 5.13934 5.22584 5.28066 5.36601 5.39655 5.45542 5.51710 5.91461 6.04916 6.51810 6.59281 7.20214 7.39529 7.56228 8.12507 8.57653 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.010032 B = 0.007556 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.530026 B = 3704.879266 C = 5389.504930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.143 3.857 3 N -0.409 5.409 4 C -0.341 4.341 5 H 0.062 0.938 6 C 0.016 3.984 7 N -0.852 5.852 8 Si 0.963 3.037 9 H -0.277 1.277 10 H -0.265 1.265 11 H -0.282 1.282 12 C 0.448 3.552 13 O -0.649 6.649 14 C 0.114 3.886 15 C -0.116 4.116 16 C -0.087 4.087 17 C -0.140 4.140 18 C 0.113 3.887 19 N -0.606 5.606 20 C 0.656 3.344 21 O -0.568 6.568 22 O -0.360 6.360 23 C 0.129 3.871 24 C -0.176 4.176 25 C -0.127 4.127 26 C -0.177 4.177 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.273 0.727 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.177 0.823 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.045 0.955 43 H 0.073 0.927 44 H 0.101 0.899 45 H 0.075 0.925 46 H 0.043 0.957 47 H 0.090 0.910 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.485 -12.971 13.711 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.019 3.981 3 N -0.123 5.123 4 C -0.469 4.469 5 H 0.080 0.920 6 C -0.189 4.189 7 N -0.490 5.490 8 Si 0.788 3.212 9 H -0.203 1.203 10 H -0.190 1.190 11 H -0.207 1.207 12 C 0.237 3.763 13 O -0.539 6.539 14 C 0.027 3.973 15 C -0.155 4.155 16 C -0.105 4.105 17 C -0.178 4.178 18 C -0.007 4.007 19 N -0.351 5.351 20 C 0.411 3.589 21 O -0.456 6.456 22 O -0.276 6.276 23 C 0.092 3.908 24 C -0.233 4.233 25 C -0.184 4.184 26 C -0.234 4.234 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.128 0.872 35 H 0.194 0.806 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.082 0.918 41 H 0.110 0.890 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.120 0.880 45 H 0.094 0.906 46 H 0.062 0.938 47 H 0.109 0.891 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.783 -12.526 13.058 18.307 hybrid contribution 0.671 0.768 -1.626 1.920 sum 3.454 -11.758 11.432 16.759 Atomic orbital electron populations 1.22113 0.95362 1.01301 1.01105 1.21280 0.94761 0.82394 0.99622 1.43613 1.52972 1.11620 1.04100 1.19373 1.43842 0.99724 0.83992 0.91955 1.25652 0.95877 0.96804 1.00544 1.70284 1.23734 1.27091 1.27847 0.85403 0.79230 0.78299 0.78271 1.20260 1.18983 1.20705 1.19566 0.85162 0.86804 0.84768 1.90434 1.57550 1.18607 1.87298 1.23091 0.92821 0.87403 0.94001 1.24437 1.02174 0.97300 0.91598 1.24862 0.95396 0.91539 0.98688 1.24386 0.93810 1.02449 0.97153 1.23298 0.97810 0.98783 0.80777 1.48111 1.38091 1.29052 1.19847 1.17629 0.78746 0.80521 0.82010 1.91140 1.65798 1.62522 1.26147 1.86264 1.57442 1.36476 1.47392 1.22369 0.87519 0.94521 0.86344 1.22435 0.98153 1.00070 1.02685 1.21832 1.01553 0.91913 1.03086 1.22431 1.01015 1.02355 0.97636 0.92385 0.93527 0.91970 0.92396 0.93006 0.91701 0.91455 0.87169 0.80558 0.87598 0.89934 0.87695 0.88555 0.91844 0.89041 0.93579 0.90756 0.88041 0.90637 0.93796 0.89096 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.14 9.07 71.98 0.65 -5.48 16 2 C 0.14 6.98 3.70 86.38 0.32 7.30 16 3 N -0.41 -23.07 1.74 -635.54 -1.10 -24.17 16 4 C -0.34 -21.26 9.42 84.04 0.79 -20.47 16 5 H 0.06 4.28 7.34 -2.91 -0.02 4.26 16 6 C 0.02 0.88 4.85 84.92 0.41 1.29 16 7 N -0.85 -45.80 8.54 21.66 0.19 -45.62 16 8 Si 0.96 45.96 29.65 68.60 2.03 47.99 16 9 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 12 C 0.45 24.52 6.11 87.66 0.54 25.06 16 13 O -0.65 -41.08 16.32 -3.07 -0.05 -41.13 16 14 C 0.11 4.47 1.42 -0.24 0.00 4.47 16 15 C -0.12 -3.51 7.48 30.57 0.23 -3.28 16 16 C -0.09 -1.71 6.45 -11.04 -0.07 -1.79 16 17 C -0.14 -3.97 5.02 29.29 0.15 -3.82 16 18 C 0.11 2.52 7.36 87.17 0.64 3.16 16 19 N -0.61 -21.64 2.58 -900.02 -2.32 -23.97 16 20 C 0.66 26.62 6.42 129.79 0.83 27.45 16 21 O -0.57 -28.49 9.16 19.79 0.18 -28.31 16 22 O -0.36 -11.93 9.69 -55.43 -0.54 -12.47 16 23 C 0.13 3.69 1.13 -10.79 -0.01 3.67 16 24 C -0.18 -5.32 8.31 71.98 0.60 -4.72 16 25 C -0.13 -2.31 8.85 71.98 0.64 -1.67 16 26 C -0.18 -5.64 8.23 71.98 0.59 -5.04 16 27 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.05 1.80 5.52 -2.39 -0.01 1.79 16 29 H 0.06 3.14 6.30 -2.39 -0.02 3.13 16 30 H 0.06 3.16 6.02 -2.39 -0.01 3.14 16 31 H 0.05 2.33 3.68 -2.39 -0.01 2.32 16 32 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.11 3.23 7.89 -2.39 -0.02 3.21 16 35 H 0.18 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.11 2.91 7.89 -2.39 -0.02 2.89 16 37 H 0.08 2.32 6.32 -2.39 -0.02 2.31 16 38 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.05 1.85 6.01 -2.39 -0.01 1.83 16 43 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 44 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.04 1.86 6.13 -2.39 -0.01 1.85 16 47 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 48 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -82.60 361.94 5.65 -76.94 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.96 Total: 24.62 kcal Atomic # 6 Polarization: 19.81 SS G_CDS: 6.31 Total: 26.11 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -3.24 Total: -93.75 kcal Atomic # 8 Polarization: -81.51 SS G_CDS: -0.41 Total: -81.91 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -82.60 5.65 -76.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336306951.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.401 kcal (2) G-P(sol) polarization free energy of solvation -82.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds