Wall clock time and date at job start Tue Mar 31 2020 13:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.41067 * 2 1 4 4 C 1.53247 * 109.34490 * 240.19723 * 2 1 3 5 5 H 1.09000 * 109.63351 * 182.21712 * 4 2 1 6 6 C 1.53008 * 109.63094 * 61.62996 * 4 2 1 7 7 S 1.81894 * 108.50468 * 301.92556 * 4 2 1 8 8 C 1.81905 * 101.91542 * 308.69299 * 7 4 2 9 9 C 1.53246 * 108.50126 * 51.30362 * 8 7 4 10 10 N 1.46464 * 109.86377 * 297.99603 * 9 8 7 11 11 C 1.38580 * 111.00206 * 197.77111 * 10 9 8 12 12 N 1.31216 * 126.46841 * 269.88699 * 11 10 9 13 13 N 1.28527 * 109.85839 * 179.97438 * 12 11 10 14 14 C 1.30298 * 110.05574 * 0.02562 * 13 12 11 15 15 C 1.50694 * 126.34843 * 180.02562 * 14 13 12 16 16 C 1.52994 * 109.47544 * 89.97172 * 15 14 13 17 17 C 1.52998 * 109.47402 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47294 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99962 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99652 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99499 * 180.02562 * 20 18 17 22 22 Si 1.86791 * 120.00380 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46960 * 89.99970 * 22 20 18 24 24 H 1.48495 * 109.47316 * 210.00035 * 22 20 18 25 25 H 1.48497 * 109.47143 * 330.00467 * 22 20 18 26 26 N 1.36452 * 126.47462 * 89.57633 * 11 10 9 27 27 C 1.46496 * 127.13563 * 0.03986 * 26 11 10 28 28 H 1.09001 * 109.47226 * 293.11277 * 1 2 3 29 29 H 1.09003 * 109.46939 * 53.10609 * 1 2 3 30 30 H 1.08993 * 109.47185 * 173.10806 * 1 2 3 31 31 H 1.08998 * 109.46659 * 59.99982 * 6 4 2 32 32 H 1.08996 * 109.47200 * 180.02562 * 6 4 2 33 33 H 1.09001 * 109.46816 * 300.00238 * 6 4 2 34 34 H 1.08995 * 109.62543 * 291.60226 * 8 7 4 35 35 H 1.08996 * 109.62767 * 171.00789 * 8 7 4 36 36 H 1.09007 * 109.40129 * 177.87717 * 9 8 7 37 37 H 1.09006 * 109.34322 * 58.08215 * 9 8 7 38 38 H 1.09003 * 109.46866 * 209.97049 * 15 14 13 39 39 H 1.09000 * 109.47202 * 329.96724 * 15 14 13 40 40 H 1.09003 * 109.46938 * 299.99832 * 16 15 14 41 41 H 1.09000 * 109.47324 * 60.00122 * 16 15 14 42 42 H 1.09001 * 109.47368 * 300.00529 * 17 16 15 43 43 H 1.09003 * 109.47163 * 60.00276 * 17 16 15 44 44 H 0.97000 * 119.99709 * 179.97438 * 21 20 18 45 45 H 1.08991 * 109.47389 * 95.09868 * 27 26 11 46 46 H 1.09008 * 109.46809 * 215.10149 * 27 26 11 47 47 H 1.09003 * 109.47133 * 335.09044 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8922 1.0281 0.0000 4 6 2.0376 -0.7187 -1.2547 5 1 3.1269 -0.7560 -1.2400 6 6 1.5618 0.0279 -2.5027 7 16 1.3682 -2.4099 -1.2619 8 6 1.8167 -2.9985 0.3998 9 6 1.3395 -1.9659 1.4267 10 7 2.0166 -0.6874 1.1983 11 6 1.9223 0.1306 2.3130 12 7 0.9727 1.0008 2.5637 13 7 1.2006 1.5847 3.6857 14 6 2.3004 1.1260 4.2128 15 6 2.9092 1.5542 5.5231 16 6 2.3606 0.6780 6.6510 17 6 2.9792 1.1124 7.9812 18 6 2.4384 0.2497 9.0922 19 1 1.7245 -0.5301 8.8716 20 6 2.8542 0.4567 10.3904 21 7 2.3826 -0.2965 11.3599 22 14 4.0884 1.8059 10.7720 23 1 3.3655 3.0696 11.0649 24 1 4.9001 1.4150 11.9524 25 1 4.9806 2.0060 9.6020 26 7 2.7961 0.1791 3.3599 27 6 4.0147 -0.6154 3.5322 28 1 -0.3634 0.4034 0.9452 29 1 -0.3633 0.6170 -0.8219 30 1 -0.3633 -1.0202 -0.1233 31 1 1.9500 1.0463 -2.4868 32 1 1.9238 -0.4856 -3.3933 33 1 0.4722 0.0545 -2.5167 34 1 2.8987 -3.1106 0.4688 35 1 1.3333 -3.9563 0.5918 36 1 1.5676 -2.3222 2.4313 37 1 0.2628 -1.8284 1.3269 38 1 3.9926 1.4458 5.4730 39 1 2.6570 2.5967 5.7175 40 1 1.2772 0.7864 6.7011 41 1 2.6129 -0.3645 6.4567 42 1 4.0626 1.0037 7.9308 43 1 2.7273 2.1549 8.1758 44 1 2.6754 -0.1511 12.2732 45 1 4.8724 -0.0483 3.1708 46 1 4.1511 -0.8469 4.5887 47 1 3.9272 -1.5425 2.9657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338866647.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:55 Heat of formation + Delta-G solvation = 82.609350 kcal Electronic energy + Delta-G solvation = -25814.643040 eV Core-core repulsion = 22353.157712 eV Total energy + Delta-G solvation = -3461.485329 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.02931 -39.41750 -35.43079 -34.90740 -34.14027 -32.54794 -31.59105 -29.83521 -28.94894 -27.46711 -27.19916 -25.60347 -23.75076 -23.12321 -21.72346 -20.74636 -20.22397 -20.07970 -17.77244 -16.96961 -16.73807 -16.51997 -16.05947 -15.73915 -14.97101 -14.89099 -14.65196 -14.34453 -14.21580 -13.80352 -13.48381 -13.34415 -13.27489 -12.84906 -12.74469 -12.62066 -12.52497 -12.25561 -12.14711 -12.02472 -11.85457 -11.34040 -11.21344 -11.17604 -11.10185 -10.89511 -10.50776 -10.17081 -10.06238 -10.04283 -9.94207 -9.79596 -9.42289 -9.25314 -8.60016 -8.58199 -7.96256 -6.08349 -4.07110 1.32140 1.68975 2.09815 2.11367 2.85173 3.27766 3.30872 3.35246 3.36806 4.18807 4.25947 4.40904 4.47074 4.57118 4.58269 4.65007 4.68988 4.78078 4.95554 4.96734 5.04674 5.07223 5.13504 5.23081 5.25619 5.28053 5.30652 5.39903 5.47657 5.57462 5.63505 5.70009 5.74914 5.82027 5.85148 5.98023 6.21459 6.33081 6.41400 6.46720 6.54551 6.76971 7.06932 7.20297 7.32942 7.73445 8.48859 8.78080 8.96262 9.53422 11.05115 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.028228 B = 0.002465 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.678163 B =11356.886562 C =11679.002956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.104 3.896 3 H 0.096 0.904 4 C -0.042 4.042 5 H 0.095 0.905 6 C -0.134 4.134 7 S -0.257 6.257 8 C -0.076 4.076 9 C 0.052 3.948 10 N -0.467 5.467 11 C 0.334 3.666 12 N -0.307 5.307 13 N -0.290 5.290 14 C 0.206 3.794 15 C -0.039 4.039 16 C -0.095 4.095 17 C -0.012 4.012 18 C -0.522 4.522 19 H 0.071 0.929 20 C 0.066 3.934 21 N -0.903 5.903 22 Si 0.881 3.119 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.265 1.265 26 N -0.470 5.470 27 C 0.078 3.922 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.263 0.737 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.036 -2.845 -27.625 27.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.005 4.005 3 H 0.114 0.886 4 C -0.171 4.171 5 H 0.114 0.886 6 C -0.193 4.193 7 S -0.030 6.030 8 C -0.224 4.224 9 C -0.076 4.076 10 N -0.191 5.191 11 C -0.022 4.022 12 N -0.151 5.151 13 N -0.129 5.129 14 C -0.062 4.062 15 C -0.079 4.079 16 C -0.133 4.133 17 C -0.050 4.050 18 C -0.560 4.560 19 H 0.089 0.911 20 C -0.135 4.135 21 N -0.542 5.542 22 Si 0.708 3.292 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.190 1.190 26 N -0.163 5.163 27 C -0.065 4.065 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.132 0.868 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.035 0.965 43 H 0.034 0.966 44 H 0.073 0.927 45 H 0.098 0.902 46 H 0.113 0.887 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.757 -2.764 -28.516 28.703 hybrid contribution 1.876 0.483 1.575 2.497 sum 3.633 -2.281 -26.940 27.280 Atomic orbital electron populations 1.22733 0.94480 1.03764 1.04550 1.21733 0.95690 0.97380 0.85725 0.88636 1.23339 1.02895 0.93292 0.97566 0.88643 1.21663 1.02720 0.99897 0.95032 1.86956 1.78114 1.16431 1.21467 1.23502 1.05134 1.00741 0.93071 1.22402 0.98848 0.86860 0.99498 1.57943 1.58237 1.03318 0.99648 1.22032 0.90036 1.00137 0.90016 1.74550 1.19888 1.10128 1.10557 1.74070 1.13015 1.22611 1.03224 1.25242 0.94262 0.90696 0.95950 1.20389 0.99237 1.02337 0.85907 1.21471 1.00972 0.97402 0.93505 1.19575 0.95974 0.96921 0.92494 1.21102 1.26399 1.17758 0.90725 0.91115 1.25044 0.96168 0.96028 0.96292 1.69918 1.44260 1.39612 1.00386 0.86763 0.81881 0.82542 0.77994 1.20187 1.21429 1.19003 1.46174 1.21335 1.31490 1.17275 1.22062 0.84011 0.95733 1.04723 0.89427 0.91531 0.90591 0.90879 0.91389 0.90994 0.88903 0.86763 0.89603 0.90692 0.90312 0.88345 0.91816 0.93022 0.96547 0.96604 0.92694 0.90164 0.88653 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.96 7.45 37.16 0.28 -1.68 16 2 C 0.10 0.99 2.18 -67.82 -0.15 0.84 16 3 H 0.10 1.01 7.93 -51.93 -0.41 0.60 16 4 C -0.04 -0.32 3.09 -26.60 -0.08 -0.41 16 5 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 6 C -0.13 -0.85 8.92 37.16 0.33 -0.52 16 7 S -0.26 -2.17 20.13 -107.50 -2.16 -4.33 16 8 C -0.08 -0.55 6.69 37.28 0.25 -0.30 16 9 C 0.05 0.48 5.12 -3.93 -0.02 0.46 16 10 N -0.47 -4.83 4.34 -167.31 -0.73 -5.56 16 11 C 0.33 4.48 6.38 -318.88 -2.04 2.45 16 12 N -0.31 -4.98 9.78 30.31 0.30 -4.68 16 13 N -0.29 -5.15 12.18 32.99 0.40 -4.74 16 14 C 0.21 3.20 7.32 -154.01 -1.13 2.07 16 15 C -0.04 -0.59 5.52 -27.89 -0.15 -0.74 16 16 C -0.09 -1.77 5.13 -26.74 -0.14 -1.91 16 17 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 18 C -0.52 -14.56 9.66 -34.44 -0.33 -14.89 16 19 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 20 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 21 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 22 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 26 N -0.47 -6.13 3.21 -121.46 -0.39 -6.52 16 27 C 0.08 0.71 10.88 59.84 0.65 1.36 16 28 H 0.09 1.11 6.02 -51.93 -0.31 0.79 16 29 H 0.07 0.58 6.84 -51.93 -0.36 0.23 16 30 H 0.08 0.74 5.12 -51.93 -0.27 0.48 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.47 6.64 -51.93 -0.34 0.13 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.81 7.93 -51.93 -0.41 0.40 16 37 H 0.07 0.76 5.72 -51.93 -0.30 0.47 16 38 H 0.08 1.01 7.98 -51.93 -0.41 0.60 16 39 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 43 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.87 8.06 -51.92 -0.42 0.45 16 47 H 0.09 0.68 8.11 -51.93 -0.42 0.26 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -32.63 374.38 -11.38 -44.02 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -7.81 Total: -1.67 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -2.74 Total: -11.86 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.36 Total: -48.31 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Atomic # 16 Polarization: -2.17 SS G_CDS: -2.16 Total: -4.33 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.63 -11.38 -44.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338866647.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.626 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds