Wall clock time and date at job start Tue Mar 31 2020 13:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.41067 * 2 1 4 4 C 1.53247 * 109.34490 * 240.19723 * 2 1 3 5 5 H 1.09000 * 109.63351 * 182.21712 * 4 2 1 6 6 C 1.53008 * 109.63094 * 61.62996 * 4 2 1 7 7 S 1.81894 * 108.50468 * 301.92556 * 4 2 1 8 8 C 1.81905 * 101.91542 * 308.69299 * 7 4 2 9 9 C 1.53246 * 108.50126 * 51.30362 * 8 7 4 10 10 N 1.46464 * 109.86377 * 297.99603 * 9 8 7 11 11 C 1.38580 * 111.00206 * 197.77111 * 10 9 8 12 12 N 1.31216 * 126.46841 * 269.88699 * 11 10 9 13 13 N 1.28527 * 109.85839 * 179.97438 * 12 11 10 14 14 C 1.30298 * 110.05574 * 0.02562 * 13 12 11 15 15 C 1.50694 * 126.34843 * 180.02562 * 14 13 12 16 16 C 1.52994 * 109.47544 * 89.97172 * 15 14 13 17 17 C 1.52998 * 109.47402 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47294 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99962 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99652 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99499 * 180.02562 * 20 18 17 22 22 Si 1.86791 * 120.00380 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46960 * 89.99970 * 22 20 18 24 24 H 1.48495 * 109.47316 * 210.00035 * 22 20 18 25 25 H 1.48497 * 109.47143 * 330.00467 * 22 20 18 26 26 N 1.36452 * 126.47462 * 89.57633 * 11 10 9 27 27 C 1.46496 * 127.13563 * 0.03986 * 26 11 10 28 28 H 1.09001 * 109.47226 * 293.11277 * 1 2 3 29 29 H 1.09003 * 109.46939 * 53.10609 * 1 2 3 30 30 H 1.08993 * 109.47185 * 173.10806 * 1 2 3 31 31 H 1.08998 * 109.46659 * 59.99982 * 6 4 2 32 32 H 1.08996 * 109.47200 * 180.02562 * 6 4 2 33 33 H 1.09001 * 109.46816 * 300.00238 * 6 4 2 34 34 H 1.08995 * 109.62543 * 291.60226 * 8 7 4 35 35 H 1.08996 * 109.62767 * 171.00789 * 8 7 4 36 36 H 1.09007 * 109.40129 * 177.87717 * 9 8 7 37 37 H 1.09006 * 109.34322 * 58.08215 * 9 8 7 38 38 H 1.09003 * 109.46866 * 209.97049 * 15 14 13 39 39 H 1.09000 * 109.47202 * 329.96724 * 15 14 13 40 40 H 1.09003 * 109.46938 * 299.99832 * 16 15 14 41 41 H 1.09000 * 109.47324 * 60.00122 * 16 15 14 42 42 H 1.09001 * 109.47368 * 300.00529 * 17 16 15 43 43 H 1.09003 * 109.47163 * 60.00276 * 17 16 15 44 44 H 0.97000 * 119.99709 * 179.97438 * 21 20 18 45 45 H 1.08991 * 109.47389 * 95.09868 * 27 26 11 46 46 H 1.09008 * 109.46809 * 215.10149 * 27 26 11 47 47 H 1.09003 * 109.47133 * 335.09044 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8922 1.0281 0.0000 4 6 2.0376 -0.7187 -1.2547 5 1 3.1269 -0.7560 -1.2400 6 6 1.5618 0.0279 -2.5027 7 16 1.3682 -2.4099 -1.2619 8 6 1.8167 -2.9985 0.3998 9 6 1.3395 -1.9659 1.4267 10 7 2.0166 -0.6874 1.1983 11 6 1.9223 0.1306 2.3130 12 7 0.9727 1.0008 2.5637 13 7 1.2006 1.5847 3.6857 14 6 2.3004 1.1260 4.2128 15 6 2.9092 1.5542 5.5231 16 6 2.3606 0.6780 6.6510 17 6 2.9792 1.1124 7.9812 18 6 2.4384 0.2497 9.0922 19 1 1.7245 -0.5301 8.8716 20 6 2.8542 0.4567 10.3904 21 7 2.3826 -0.2965 11.3599 22 14 4.0884 1.8059 10.7720 23 1 3.3655 3.0696 11.0649 24 1 4.9001 1.4150 11.9524 25 1 4.9806 2.0060 9.6020 26 7 2.7961 0.1791 3.3599 27 6 4.0147 -0.6154 3.5322 28 1 -0.3634 0.4034 0.9452 29 1 -0.3633 0.6170 -0.8219 30 1 -0.3633 -1.0202 -0.1233 31 1 1.9500 1.0463 -2.4868 32 1 1.9238 -0.4856 -3.3933 33 1 0.4722 0.0545 -2.5167 34 1 2.8987 -3.1106 0.4688 35 1 1.3333 -3.9563 0.5918 36 1 1.5676 -2.3222 2.4313 37 1 0.2628 -1.8284 1.3269 38 1 3.9926 1.4458 5.4730 39 1 2.6570 2.5967 5.7175 40 1 1.2772 0.7864 6.7011 41 1 2.6129 -0.3645 6.4567 42 1 4.0626 1.0037 7.9308 43 1 2.7273 2.1549 8.1758 44 1 2.6754 -0.1511 12.2732 45 1 4.8724 -0.0483 3.1708 46 1 4.1511 -0.8469 4.5887 47 1 3.9272 -1.5425 2.9657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338866647.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:54 Heat of formation + Delta-G solvation = 65.364122 kcal Electronic energy + Delta-G solvation = -25815.390850 eV Core-core repulsion = 22353.157712 eV Total energy + Delta-G solvation = -3462.233138 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.12332 -40.24749 -36.82922 -35.98411 -35.06011 -34.33954 -32.63147 -31.07944 -29.83277 -28.61871 -28.31745 -26.31021 -25.39910 -23.90902 -22.68242 -22.17389 -21.59760 -20.91330 -18.94538 -18.55901 -17.80633 -17.50935 -16.92478 -16.59453 -16.38230 -15.78269 -15.66259 -15.54415 -15.38385 -14.86257 -14.74518 -14.34521 -14.02200 -14.01121 -13.90246 -13.57154 -13.40231 -13.28526 -13.23051 -12.96998 -12.81891 -12.77606 -12.57536 -12.29382 -11.92001 -11.83692 -11.78072 -11.74218 -11.62554 -11.43840 -11.34129 -11.13263 -10.74569 -10.71494 -10.47142 -9.68668 -8.62853 -8.27446 -6.32406 0.61627 0.70549 1.15890 1.40552 1.41918 1.47011 1.53651 1.68548 2.39066 2.45434 3.08610 3.29793 3.48034 3.57438 3.72982 3.83995 3.91447 3.99418 4.02416 4.14141 4.24008 4.26678 4.30519 4.34719 4.36459 4.43600 4.51269 4.60432 4.61967 4.74729 4.78946 4.81498 4.91460 4.93106 4.94978 4.96208 5.03555 5.04950 5.21088 5.35406 5.43012 5.49133 5.58548 5.58944 5.68273 6.09484 6.29428 6.76122 7.32244 7.64193 8.89696 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.028228 B = 0.002465 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.678163 B =11356.886562 C =11679.002956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.105 3.895 3 H 0.085 0.915 4 C -0.031 4.031 5 H 0.101 0.899 6 C -0.132 4.132 7 S -0.275 6.275 8 C -0.065 4.065 9 C 0.053 3.947 10 N -0.457 5.457 11 C 0.345 3.655 12 N -0.337 5.337 13 N -0.329 5.329 14 C 0.197 3.803 15 C -0.026 4.026 16 C -0.082 4.082 17 C -0.009 4.009 18 C -0.534 4.534 19 H 0.024 0.976 20 C -0.001 4.001 21 N -0.956 5.956 22 Si 0.955 3.045 23 H -0.270 1.270 24 H -0.287 1.287 25 H -0.233 1.233 26 N -0.466 5.466 27 C 0.070 3.930 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.130 0.870 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.036 0.964 41 H 0.050 0.950 42 H 0.036 0.964 43 H 0.023 0.977 44 H 0.265 0.735 45 H 0.102 0.898 46 H 0.097 0.903 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.695 -2.305 -29.512 30.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.004 4.004 3 H 0.103 0.897 4 C -0.160 4.160 5 H 0.119 0.881 6 C -0.191 4.191 7 S -0.048 6.048 8 C -0.214 4.214 9 C -0.075 4.075 10 N -0.182 5.182 11 C -0.013 4.013 12 N -0.181 5.181 13 N -0.169 5.169 14 C -0.071 4.071 15 C -0.065 4.065 16 C -0.121 4.121 17 C -0.047 4.047 18 C -0.572 4.572 19 H 0.042 0.958 20 C -0.197 4.197 21 N -0.597 5.597 22 Si 0.777 3.223 23 H -0.195 1.195 24 H -0.213 1.213 25 H -0.156 1.156 26 N -0.159 5.159 27 C -0.072 4.072 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.148 0.852 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.042 0.958 44 H 0.074 0.926 45 H 0.120 0.880 46 H 0.116 0.884 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.424 -2.237 -30.439 30.840 hybrid contribution 0.951 0.188 2.117 2.328 sum 5.375 -2.049 -28.323 28.901 Atomic orbital electron populations 1.22633 0.94948 1.03787 1.03385 1.21755 0.95264 0.97189 0.86196 0.89667 1.23304 1.03018 0.92696 0.97011 0.88113 1.21677 1.02530 1.00365 0.94532 1.87075 1.78461 1.16975 1.22278 1.23503 1.05918 1.00476 0.91461 1.22428 0.98138 0.86698 1.00245 1.58183 1.58063 1.03192 0.98765 1.22356 0.89211 0.99284 0.90420 1.74501 1.21389 1.11616 1.10637 1.73975 1.14424 1.24192 1.04281 1.25186 0.94120 0.91439 0.96377 1.20222 1.00764 1.01421 0.84118 1.21221 0.99211 0.98235 0.93473 1.19524 0.96898 0.96030 0.92200 1.21499 1.25464 1.17394 0.92847 0.95753 1.26111 0.98645 0.98947 0.95974 1.70093 1.46435 1.42113 1.01016 0.85594 0.79276 0.78611 0.78777 1.19549 1.21341 1.15612 1.46358 1.22076 1.30998 1.16464 1.22397 0.83023 0.96326 1.05406 0.92216 0.90486 0.90447 0.89887 0.90592 0.91346 0.87734 0.85231 0.89755 0.91942 0.87148 0.87984 0.94498 0.93103 0.94578 0.95836 0.92577 0.87979 0.88423 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.72 7.45 71.98 0.54 -3.18 16 2 C 0.10 1.89 2.18 45.08 0.10 1.99 16 3 H 0.09 1.74 7.93 -2.38 -0.02 1.72 16 4 C -0.03 -0.42 3.09 30.68 0.09 -0.33 16 5 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 6 C -0.13 -1.42 8.92 71.98 0.64 -0.78 16 7 S -0.27 -4.14 20.13 -56.49 -1.14 -5.27 16 8 C -0.07 -0.81 6.69 72.06 0.48 -0.33 16 9 C 0.05 0.92 5.12 86.47 0.44 1.36 16 10 N -0.46 -8.87 4.34 -683.25 -2.96 -11.83 16 11 C 0.34 8.99 6.38 260.11 1.66 10.65 16 12 N -0.34 -11.08 9.78 -58.01 -0.57 -11.65 16 13 N -0.33 -11.81 12.18 -49.54 -0.60 -12.41 16 14 C 0.20 5.96 7.32 137.64 1.01 6.97 16 15 C -0.03 -0.72 5.52 29.84 0.16 -0.56 16 16 C -0.08 -3.04 5.13 30.59 0.16 -2.89 16 17 C -0.01 -0.40 4.04 29.85 0.12 -0.27 16 18 C -0.53 -30.33 9.66 25.60 0.25 -30.08 16 19 H 0.02 1.55 7.99 -2.91 -0.02 1.52 16 20 C 0.00 -0.03 5.47 84.66 0.46 0.43 16 21 N -0.96 -59.96 13.96 21.45 0.30 -59.66 16 22 Si 0.95 42.74 27.47 68.60 1.88 44.62 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.23 -9.18 6.54 99.48 0.65 -8.53 16 26 N -0.47 -11.44 3.21 -538.20 -1.73 -13.17 16 27 C 0.07 1.07 10.88 127.77 1.39 2.46 16 28 H 0.06 1.55 6.02 -2.39 -0.01 1.54 16 29 H 0.08 1.32 6.84 -2.39 -0.02 1.30 16 30 H 0.08 1.49 5.12 -2.39 -0.01 1.47 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.79 6.64 -2.39 -0.02 0.78 16 34 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.49 7.93 -2.38 -0.02 1.47 16 37 H 0.06 1.25 5.72 -2.38 -0.01 1.24 16 38 H 0.11 2.41 7.98 -2.39 -0.02 2.40 16 39 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 40 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.04 1.45 7.20 -2.39 -0.02 1.43 16 43 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 44 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 45 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.10 1.49 8.06 -2.38 -0.02 1.48 16 47 H 0.11 1.28 8.11 -2.39 -0.02 1.27 16 Total: -1.00 -73.51 374.38 3.59 -69.92 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.89 Total: 14.02 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: 7.51 Total: -14.57 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -5.56 Total: -108.72 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.88 Total: 44.62 kcal Atomic # 16 Polarization: -4.14 SS G_CDS: -1.14 Total: -5.27 kcal Total: -73.51 3.59 -69.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338866647.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.287 kcal (2) G-P(sol) polarization free energy of solvation -73.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds