Wall clock time and date at job start Tue Mar 31 2020 13:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.63240 * 2 1 4 4 S 1.81899 * 109.63159 * 120.39254 * 2 1 3 5 5 C 1.81897 * 101.91596 * 171.20764 * 4 2 1 6 6 C 1.53251 * 108.50638 * 308.69563 * 5 4 2 7 7 N 1.46476 * 109.85896 * 62.00157 * 6 5 4 8 8 C 1.38571 * 110.99676 * 162.23427 * 7 6 5 9 9 N 1.31218 * 126.47836 * 35.78923 * 8 7 6 10 10 N 1.28527 * 109.86181 * 179.69200 * 9 8 7 11 11 C 1.30299 * 110.05729 * 0.44887 * 10 9 8 12 12 C 1.50690 * 126.34858 * 179.82339 * 11 10 9 13 13 C 1.53009 * 109.46874 * 269.68853 * 12 11 10 14 14 C 1.53003 * 109.46690 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.46568 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00332 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99658 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00254 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99991 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47095 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47425 * 120.00006 * 19 17 15 22 22 H 1.48505 * 109.46878 * 240.00267 * 19 17 15 23 23 N 1.36458 * 126.46937 * 215.74166 * 8 7 6 24 24 C 1.46493 * 127.14192 * 0.02562 * 23 8 7 25 25 C 1.46469 * 112.55875 * 287.34576 * 7 6 5 26 26 H 1.09002 * 109.40743 * 192.77747 * 25 7 6 27 27 C 1.53000 * 109.40333 * 312.53700 * 25 7 6 28 28 H 1.09000 * 109.47294 * 299.60876 * 1 2 3 29 29 H 1.09001 * 109.46884 * 59.60603 * 1 2 3 30 30 H 1.08997 * 109.47028 * 179.60742 * 1 2 3 31 31 H 1.08996 * 109.63160 * 188.99029 * 5 4 2 32 32 H 1.09003 * 109.79391 * 68.49253 * 5 4 2 33 33 H 1.08993 * 109.40719 * 301.88583 * 6 5 4 34 34 H 1.09002 * 109.40617 * 182.11837 * 6 5 4 35 35 H 1.09003 * 109.46806 * 149.69547 * 12 11 10 36 36 H 1.08992 * 109.47515 * 29.69169 * 12 11 10 37 37 H 1.08996 * 109.47059 * 299.99985 * 13 12 11 38 38 H 1.08993 * 109.47091 * 60.00234 * 13 12 11 39 39 H 1.08996 * 109.47068 * 299.99625 * 14 13 12 40 40 H 1.08993 * 109.47452 * 60.00100 * 14 13 12 41 41 H 0.97001 * 119.99903 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.47226 * 264.93080 * 24 23 8 43 43 H 1.09002 * 109.47082 * 24.92350 * 24 23 8 44 44 H 1.08996 * 109.47930 * 144.92588 * 24 23 8 45 45 H 1.09000 * 109.47054 * 67.01946 * 27 25 7 46 46 H 1.09000 * 109.47014 * 187.02106 * 27 25 7 47 47 H 1.09004 * 109.47463 * 307.01779 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 16 2.1411 -0.8668 1.4778 5 6 3.9239 -0.9814 1.1356 6 6 4.1134 -1.5781 -0.2632 7 7 3.5130 -0.6953 -1.2662 8 6 3.9966 -0.9817 -2.5328 9 7 4.3015 -2.1688 -3.0015 10 7 4.7138 -2.0666 -4.2145 11 6 4.7055 -0.8177 -4.5857 12 6 5.1205 -0.2832 -5.9321 13 6 6.6125 0.0556 -5.9084 14 6 7.0337 0.5988 -7.2753 15 6 8.5033 0.9320 -7.2522 16 1 9.0790 0.7726 -6.3525 17 6 9.1127 1.4402 -8.3797 18 7 8.4117 1.6338 -9.4755 19 14 10.9344 1.8525 -8.3513 20 1 11.4907 1.5448 -7.0092 21 1 11.6409 1.0446 -9.3776 22 1 11.1197 3.2965 -8.6442 23 7 4.2447 -0.0824 -3.5288 24 6 4.0562 1.3694 -3.4767 25 6 2.0490 -0.7317 -1.2425 26 1 1.6601 -0.2462 -2.1376 27 6 1.5772 -2.1868 -1.2097 28 1 -0.3634 0.5077 0.8935 29 1 -0.3633 0.5200 -0.8865 30 1 -0.3633 -1.0276 -0.0070 31 1 4.3982 -1.6258 1.8758 32 1 4.3718 0.0116 1.1738 33 1 3.6338 -2.5558 -0.3079 34 1 5.1781 -1.6884 -0.4688 35 1 4.5473 0.6158 -6.1585 36 1 4.9312 -1.0370 -6.6963 37 1 6.8017 0.8094 -5.1442 38 1 7.1856 -0.8433 -5.6819 39 1 6.8444 -0.1547 -8.0398 40 1 6.4605 1.4978 -7.5015 41 1 8.8405 1.9917 -10.2686 42 1 3.0802 1.6241 -3.8897 43 1 4.1118 1.7061 -2.4415 44 1 4.8363 1.8583 -4.0602 45 1 1.8616 -2.6396 -0.2599 46 1 0.4930 -2.2197 -1.3177 47 1 2.0407 -2.7376 -2.0282 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338866648.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:58 Heat of formation + Delta-G solvation = 76.437571 kcal Electronic energy + Delta-G solvation = -25768.741249 eV Core-core repulsion = 22306.988292 eV Total energy + Delta-G solvation = -3461.752957 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.97126 -39.41314 -35.33562 -34.69366 -34.30629 -32.55845 -31.37205 -29.80659 -28.83348 -27.44164 -26.93517 -25.54784 -23.75108 -23.31480 -21.50810 -20.86478 -20.18536 -20.10088 -17.81117 -16.98376 -16.57827 -16.30707 -15.98413 -15.70303 -15.00887 -14.90441 -14.61755 -14.36861 -14.13317 -13.76371 -13.49031 -13.33200 -13.17450 -12.80018 -12.69585 -12.58568 -12.36005 -12.21987 -12.08416 -11.92192 -11.60432 -11.45063 -11.25470 -11.15504 -10.91867 -10.83455 -10.61338 -10.48908 -10.11548 -10.05071 -9.81640 -9.61032 -9.37101 -9.14460 -8.53401 -8.39542 -7.97338 -6.04547 -4.06817 1.32070 1.74401 2.09656 2.15940 2.90842 3.28524 3.34209 3.36450 3.40701 4.09017 4.35752 4.42051 4.52215 4.56639 4.58779 4.66923 4.75454 4.83954 4.86465 4.97564 5.00028 5.13442 5.15075 5.20419 5.31749 5.33277 5.36009 5.39615 5.43785 5.54353 5.62448 5.70349 5.79035 5.86360 5.96377 6.01992 6.07442 6.35576 6.54698 6.56890 6.71063 6.98459 7.12087 7.60791 7.73310 7.94652 8.36953 8.83383 8.99956 9.57688 11.06743 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.025860 B = 0.002390 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.510990 B =11711.785069 C =11913.040477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.040 4.040 3 H 0.097 0.903 4 S -0.257 6.257 5 C -0.077 4.077 6 C 0.064 3.936 7 N -0.466 5.466 8 C 0.332 3.668 9 N -0.309 5.309 10 N -0.291 5.291 11 C 0.208 3.792 12 C -0.037 4.037 13 C -0.102 4.102 14 C 0.023 3.977 15 C -0.520 4.520 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.284 1.284 23 N -0.470 5.470 24 C 0.076 3.924 25 C 0.093 3.907 26 H 0.089 0.911 27 C -0.193 4.193 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.017 0.983 41 H 0.260 0.740 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.242 -1.346 20.872 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.170 4.170 3 H 0.115 0.885 4 S -0.030 6.030 5 C -0.226 4.226 6 C -0.064 4.064 7 N -0.191 5.191 8 C -0.024 4.024 9 N -0.154 5.154 10 N -0.130 5.130 11 C -0.059 4.059 12 C -0.076 4.076 13 C -0.141 4.141 14 C -0.015 4.015 15 C -0.559 4.559 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.210 1.210 23 N -0.163 5.163 24 C -0.067 4.067 25 C -0.017 4.017 26 H 0.107 0.893 27 C -0.252 4.252 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.102 0.898 46 H 0.086 0.914 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.475 -2.650 21.694 27.983 hybrid contribution 1.371 1.594 -1.156 2.399 sum -16.104 -1.056 20.538 26.121 Atomic orbital electron populations 1.21670 0.91202 1.03543 1.02956 1.23280 0.99339 1.01337 0.93008 0.88513 1.86937 1.07853 1.77770 1.30470 1.23557 0.94406 1.05597 0.99037 1.22225 1.01037 0.94932 0.88191 1.57901 1.07228 1.54471 0.99453 1.21983 1.05277 0.85880 0.89238 1.74562 1.17858 1.18325 1.04608 1.74065 1.18648 1.15369 1.04947 1.25362 0.99640 0.88135 0.92807 1.20382 0.99416 1.01090 0.86744 1.21654 0.90449 1.00481 1.01513 1.19104 0.96208 0.96093 0.90045 1.21251 0.94584 1.42322 0.97695 0.92685 1.25012 0.98109 0.95723 0.95558 1.69965 1.35888 1.45464 1.02113 0.86550 0.85476 0.77975 0.78104 1.19757 1.20925 1.21022 1.46170 1.49088 1.09203 1.11835 1.22072 1.03636 0.75902 1.05080 1.21870 0.84399 0.97274 0.98116 0.89286 1.22628 1.02191 0.95823 1.04534 0.91238 0.90959 0.91096 0.86731 0.88891 0.90465 0.88994 0.90336 0.88377 0.93597 0.92411 0.96127 0.96491 0.93009 0.90478 0.88888 0.88507 0.89757 0.91422 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 8.95 37.16 0.33 -0.46 16 2 C -0.04 -0.30 3.08 -26.60 -0.08 -0.38 16 3 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 4 S -0.26 -2.15 20.14 -107.50 -2.16 -4.31 16 5 C -0.08 -0.60 6.69 37.29 0.25 -0.35 16 6 C 0.06 0.63 4.77 -3.92 -0.02 0.61 16 7 N -0.47 -4.92 4.34 -167.31 -0.73 -5.65 16 8 C 0.33 4.58 6.02 -318.88 -1.92 2.66 16 9 N -0.31 -5.17 11.00 30.31 0.33 -4.84 16 10 N -0.29 -5.34 12.18 32.99 0.40 -4.94 16 11 C 0.21 3.38 7.32 -154.01 -1.13 2.25 16 12 C -0.04 -0.59 5.52 -27.88 -0.15 -0.75 16 13 C -0.10 -2.02 5.14 -26.73 -0.14 -2.16 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 15 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 19 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 N -0.47 -6.38 3.21 -121.47 -0.39 -6.77 16 24 C 0.08 0.74 10.88 59.84 0.65 1.39 16 25 C 0.09 0.83 2.34 -67.82 -0.16 0.67 16 26 H 0.09 0.83 7.93 -51.93 -0.41 0.41 16 27 C -0.19 -1.81 7.53 37.16 0.28 -1.53 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.43 6.61 -51.93 -0.34 0.09 16 31 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.80 5.73 -51.93 -0.30 0.51 16 34 H 0.09 1.00 7.93 -51.93 -0.41 0.59 16 35 H 0.08 1.12 7.97 -51.93 -0.41 0.70 16 36 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.09 0.77 8.11 -51.93 -0.42 0.35 16 44 H 0.10 0.96 8.06 -51.93 -0.42 0.54 16 45 H 0.08 0.79 5.13 -51.93 -0.27 0.53 16 46 H 0.07 0.54 6.84 -51.93 -0.35 0.19 16 47 H 0.07 0.84 7.01 -51.93 -0.36 0.48 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -32.13 379.71 -11.64 -43.77 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -7.90 Total: -2.91 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -2.64 Total: -10.86 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.36 Total: -47.84 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -2.15 SS G_CDS: -2.16 Total: -4.31 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.13 -11.64 -43.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338866648.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.205 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds