Wall clock time and date at job start Tue Mar 31 2020 13:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.63240 * 2 1 4 4 S 1.81899 * 109.63159 * 120.39254 * 2 1 3 5 5 C 1.81897 * 101.91596 * 171.20764 * 4 2 1 6 6 C 1.53251 * 108.50638 * 308.69563 * 5 4 2 7 7 N 1.46476 * 109.85896 * 62.00157 * 6 5 4 8 8 C 1.38571 * 110.99676 * 162.23427 * 7 6 5 9 9 N 1.31218 * 126.47836 * 35.78923 * 8 7 6 10 10 N 1.28527 * 109.86181 * 179.69200 * 9 8 7 11 11 C 1.30299 * 110.05729 * 0.44887 * 10 9 8 12 12 C 1.50690 * 126.34858 * 179.82339 * 11 10 9 13 13 C 1.53009 * 109.46874 * 269.68853 * 12 11 10 14 14 C 1.53003 * 109.46690 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.46568 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00332 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99658 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00254 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99991 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47095 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47425 * 120.00006 * 19 17 15 22 22 H 1.48505 * 109.46878 * 240.00267 * 19 17 15 23 23 N 1.36458 * 126.46937 * 215.74166 * 8 7 6 24 24 C 1.46493 * 127.14192 * 0.02562 * 23 8 7 25 25 C 1.46469 * 112.55875 * 287.34576 * 7 6 5 26 26 H 1.09002 * 109.40743 * 192.77747 * 25 7 6 27 27 C 1.53000 * 109.40333 * 312.53700 * 25 7 6 28 28 H 1.09000 * 109.47294 * 299.60876 * 1 2 3 29 29 H 1.09001 * 109.46884 * 59.60603 * 1 2 3 30 30 H 1.08997 * 109.47028 * 179.60742 * 1 2 3 31 31 H 1.08996 * 109.63160 * 188.99029 * 5 4 2 32 32 H 1.09003 * 109.79391 * 68.49253 * 5 4 2 33 33 H 1.08993 * 109.40719 * 301.88583 * 6 5 4 34 34 H 1.09002 * 109.40617 * 182.11837 * 6 5 4 35 35 H 1.09003 * 109.46806 * 149.69547 * 12 11 10 36 36 H 1.08992 * 109.47515 * 29.69169 * 12 11 10 37 37 H 1.08996 * 109.47059 * 299.99985 * 13 12 11 38 38 H 1.08993 * 109.47091 * 60.00234 * 13 12 11 39 39 H 1.08996 * 109.47068 * 299.99625 * 14 13 12 40 40 H 1.08993 * 109.47452 * 60.00100 * 14 13 12 41 41 H 0.97001 * 119.99903 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.47226 * 264.93080 * 24 23 8 43 43 H 1.09002 * 109.47082 * 24.92350 * 24 23 8 44 44 H 1.08996 * 109.47930 * 144.92588 * 24 23 8 45 45 H 1.09000 * 109.47054 * 67.01946 * 27 25 7 46 46 H 1.09000 * 109.47014 * 187.02106 * 27 25 7 47 47 H 1.09004 * 109.47463 * 307.01779 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 16 2.1411 -0.8668 1.4778 5 6 3.9239 -0.9814 1.1356 6 6 4.1134 -1.5781 -0.2632 7 7 3.5130 -0.6953 -1.2662 8 6 3.9966 -0.9817 -2.5328 9 7 4.3015 -2.1688 -3.0015 10 7 4.7138 -2.0666 -4.2145 11 6 4.7055 -0.8177 -4.5857 12 6 5.1205 -0.2832 -5.9321 13 6 6.6125 0.0556 -5.9084 14 6 7.0337 0.5988 -7.2753 15 6 8.5033 0.9320 -7.2522 16 1 9.0790 0.7726 -6.3525 17 6 9.1127 1.4402 -8.3797 18 7 8.4117 1.6338 -9.4755 19 14 10.9344 1.8525 -8.3513 20 1 11.4907 1.5448 -7.0092 21 1 11.6409 1.0446 -9.3776 22 1 11.1197 3.2965 -8.6442 23 7 4.2447 -0.0824 -3.5288 24 6 4.0562 1.3694 -3.4767 25 6 2.0490 -0.7317 -1.2425 26 1 1.6601 -0.2462 -2.1376 27 6 1.5772 -2.1868 -1.2097 28 1 -0.3634 0.5077 0.8935 29 1 -0.3633 0.5200 -0.8865 30 1 -0.3633 -1.0276 -0.0070 31 1 4.3982 -1.6258 1.8758 32 1 4.3718 0.0116 1.1738 33 1 3.6338 -2.5558 -0.3079 34 1 5.1781 -1.6884 -0.4688 35 1 4.5473 0.6158 -6.1585 36 1 4.9312 -1.0370 -6.6963 37 1 6.8017 0.8094 -5.1442 38 1 7.1856 -0.8433 -5.6819 39 1 6.8444 -0.1547 -8.0398 40 1 6.4605 1.4978 -7.5015 41 1 8.8405 1.9917 -10.2686 42 1 3.0802 1.6241 -3.8897 43 1 4.1118 1.7061 -2.4415 44 1 4.8363 1.8583 -4.0602 45 1 1.8616 -2.6396 -0.2599 46 1 0.4930 -2.2197 -1.3177 47 1 2.0407 -2.7376 -2.0282 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338866648.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:57 Heat of formation + Delta-G solvation = 60.358606 kcal Electronic energy + Delta-G solvation = -25769.438485 eV Core-core repulsion = 22306.988292 eV Total energy + Delta-G solvation = -3462.450193 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.12415 -40.24754 -36.80470 -35.87633 -35.19079 -34.35048 -32.40373 -30.91615 -29.85747 -28.43343 -28.34471 -26.33122 -25.48528 -24.12371 -22.47477 -22.37847 -21.51713 -20.98224 -18.74122 -18.42396 -17.88211 -17.48492 -16.90862 -16.64503 -16.46773 -15.74573 -15.71719 -15.56414 -15.43730 -14.74200 -14.43336 -14.27131 -14.01213 -13.99456 -13.84134 -13.51956 -13.29401 -13.27755 -13.19394 -12.89033 -12.82488 -12.71906 -12.64165 -12.52908 -12.41704 -11.94425 -11.79800 -11.75795 -11.52934 -11.40558 -11.24059 -11.12402 -10.71898 -10.54780 -10.48572 -9.67287 -8.63010 -8.20073 -6.29889 0.62590 0.70213 1.15176 1.39167 1.40794 1.47026 1.52850 1.68350 2.40834 2.45697 3.13689 3.29160 3.43275 3.64504 3.72663 3.85375 3.88307 3.94883 4.07697 4.16621 4.22690 4.23581 4.28238 4.35145 4.36625 4.45059 4.57341 4.61486 4.62834 4.71432 4.75542 4.81948 4.87626 4.92011 4.98372 5.02052 5.07962 5.15907 5.18253 5.27978 5.44974 5.52074 5.54253 5.74181 5.85788 6.08969 6.25741 6.86266 7.39010 7.63551 8.91526 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.025860 B = 0.002390 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.510990 B =11711.785069 C =11913.040477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.030 4.030 3 H 0.103 0.897 4 S -0.273 6.273 5 C -0.067 4.067 6 C 0.065 3.935 7 N -0.458 5.458 8 C 0.348 3.652 9 N -0.341 5.341 10 N -0.328 5.328 11 C 0.199 3.801 12 C -0.023 4.023 13 C -0.084 4.084 14 C 0.027 3.973 15 C -0.542 4.542 16 H 0.053 0.947 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.959 3.041 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.275 1.275 23 N -0.466 5.466 24 C 0.068 3.932 25 C 0.094 3.906 26 H 0.091 0.909 27 C -0.186 4.186 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.130 0.870 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.039 0.961 39 H -0.004 1.004 40 H 0.007 0.993 41 H 0.264 0.736 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.891 0.159 22.524 28.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.160 4.160 3 H 0.122 0.878 4 S -0.045 6.045 5 C -0.216 4.216 6 C -0.063 4.063 7 N -0.183 5.183 8 C -0.009 4.009 9 N -0.185 5.185 10 N -0.167 5.167 11 C -0.070 4.070 12 C -0.063 4.063 13 C -0.123 4.123 14 C -0.010 4.010 15 C -0.580 4.580 16 H 0.072 0.928 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.784 3.216 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.201 1.201 23 N -0.159 5.159 24 C -0.073 4.073 25 C -0.015 4.015 26 H 0.109 0.891 27 C -0.245 4.245 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.148 0.852 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.015 0.985 40 H 0.026 0.974 41 H 0.073 0.927 42 H 0.120 0.880 43 H 0.128 0.872 44 H 0.114 0.886 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.136 -1.134 23.366 29.600 hybrid contribution 1.514 1.125 -1.615 2.483 sum -16.621 -0.009 21.752 27.375 Atomic orbital electron populations 1.21687 0.89796 1.03700 1.03940 1.23288 1.00332 1.01039 0.91302 0.87830 1.87051 1.08273 1.78050 1.31175 1.23516 0.94287 1.06044 0.97739 1.22226 1.00065 0.94810 0.89195 1.58156 1.08261 1.54054 0.97855 1.22297 1.03406 0.85276 0.89945 1.74491 1.19508 1.20128 1.04381 1.73969 1.19803 1.16913 1.06057 1.25113 1.00501 0.88099 0.93243 1.20143 0.97087 1.02024 0.87056 1.21338 0.92784 0.99483 0.98691 1.18982 0.94935 0.95023 0.92034 1.21676 0.96234 1.42335 0.97796 0.92829 1.25878 1.02821 0.95573 0.95183 1.70073 1.37870 1.46225 1.02781 0.85490 0.79791 0.78021 0.78304 1.19059 1.20540 1.20070 1.46331 1.48142 1.10543 1.10859 1.22404 1.05000 0.73401 1.06469 1.21951 0.83093 0.97218 0.99229 0.89081 1.22554 1.02925 0.95761 1.03246 0.90643 0.89562 0.91367 0.85233 0.88334 0.91310 0.90355 0.87912 0.88869 0.92855 0.94181 0.98526 0.97446 0.92720 0.87996 0.87212 0.88606 0.89855 0.89902 0.93975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 8.95 71.98 0.64 -0.54 16 2 C -0.03 -0.37 3.08 30.68 0.09 -0.28 16 3 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 4 S -0.27 -4.01 20.14 -56.49 -1.14 -5.14 16 5 C -0.07 -0.92 6.69 72.07 0.48 -0.44 16 6 C 0.07 1.23 4.77 86.47 0.41 1.65 16 7 N -0.46 -9.06 4.34 -683.24 -2.96 -12.03 16 8 C 0.35 9.36 6.02 260.11 1.57 10.92 16 9 N -0.34 -11.58 11.00 -58.01 -0.64 -12.22 16 10 N -0.33 -12.28 12.18 -49.54 -0.60 -12.88 16 11 C 0.20 6.43 7.32 137.63 1.01 7.43 16 12 C -0.02 -0.75 5.52 29.85 0.16 -0.59 16 13 C -0.08 -3.35 5.14 30.60 0.16 -3.20 16 14 C 0.03 1.38 4.97 29.85 0.15 1.53 16 15 C -0.54 -30.38 9.11 25.60 0.23 -30.15 16 16 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 17 C 0.00 0.20 5.46 84.66 0.46 0.66 16 18 N -0.93 -55.21 13.29 21.45 0.28 -54.93 16 19 Si 0.96 43.89 29.54 68.60 2.03 45.91 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 23 N -0.47 -12.08 3.21 -538.21 -1.73 -13.81 16 24 C 0.07 1.15 10.88 127.77 1.39 2.54 16 25 C 0.09 1.51 2.34 45.08 0.11 1.61 16 26 H 0.09 1.47 7.93 -2.39 -0.02 1.45 16 27 C -0.19 -3.31 7.53 71.98 0.54 -2.77 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.66 6.61 -2.39 -0.02 0.65 16 31 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.43 5.73 -2.39 -0.01 1.41 16 34 H 0.08 1.70 7.93 -2.39 -0.02 1.68 16 35 H 0.10 2.78 7.97 -2.39 -0.02 2.76 16 36 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 42 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.11 1.49 8.11 -2.39 -0.02 1.47 16 44 H 0.10 1.68 8.06 -2.39 -0.02 1.66 16 45 H 0.08 1.50 5.13 -2.39 -0.01 1.48 16 46 H 0.08 1.20 6.84 -2.39 -0.02 1.18 16 47 H 0.04 1.01 7.01 -2.39 -0.02 0.99 16 Total: -1.00 -70.02 379.71 3.60 -66.43 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.94 Total: 10.29 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 7.41 Total: -11.62 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -5.65 Total: -105.86 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -4.01 SS G_CDS: -1.14 Total: -5.14 kcal Total: -70.02 3.60 -66.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338866648.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.785 kcal (2) G-P(sol) polarization free energy of solvation -70.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds