Wall clock time and date at job start Tue Mar 31 2020 15:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50695 * 119.99862 * 2 1 4 4 N 1.46503 * 109.47227 * 124.99772 * 3 2 1 5 5 C 1.36745 * 127.13874 * 267.46003 * 4 3 2 6 6 C 1.50695 * 126.34393 * 359.96657 * 5 4 3 7 7 C 1.53007 * 109.46956 * 270.28168 * 6 5 4 8 8 C 1.50703 * 109.46942 * 180.02562 * 7 6 5 9 9 H 1.07994 * 120.00219 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99525 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00679 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99720 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46995 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47180 * 119.99738 * 12 10 8 15 15 H 1.48504 * 109.46941 * 239.99635 * 12 10 8 16 16 N 1.30289 * 107.30572 * 180.22480 * 5 4 3 17 17 N 1.28535 * 110.05204 * 359.77528 * 16 5 4 18 18 C 1.31212 * 109.86338 * 0.02562 * 17 16 5 19 19 N 1.38578 * 126.47742 * 179.97438 * 18 17 16 20 20 C 1.46900 * 110.99897 * 254.88285 * 19 18 17 21 21 C 1.52997 * 109.47274 * 61.62431 * 20 19 18 22 22 C 1.46905 * 110.99748 * 18.83343 * 19 18 17 23 23 C 1.52997 * 109.47013 * 164.07065 * 22 19 18 24 24 S 1.81401 * 109.46975 * 179.82887 * 23 22 19 25 25 C 1.81400 * 102.99891 * 179.97438 * 24 23 22 26 26 H 1.08004 * 120.00124 * 0.02562 * 1 2 3 27 27 H 1.08007 * 120.00165 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00124 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47393 * 4.99815 * 3 2 1 30 30 H 1.08996 * 109.47359 * 245.00146 * 3 2 1 31 31 H 1.08998 * 109.47547 * 30.28080 * 6 5 4 32 32 H 1.08999 * 109.47349 * 150.28499 * 6 5 4 33 33 H 1.08998 * 109.46920 * 300.00295 * 7 6 5 34 34 H 1.09003 * 109.46806 * 60.00526 * 7 6 5 35 35 H 0.96997 * 120.00756 * 179.97438 * 11 10 8 36 36 H 1.08998 * 109.47079 * 181.62611 * 20 19 18 37 37 H 1.08997 * 109.47077 * 301.62247 * 20 19 18 38 38 H 1.09003 * 109.46931 * 186.11507 * 21 20 19 39 39 H 1.09001 * 109.47214 * 306.11321 * 21 20 19 40 40 H 1.09005 * 109.47096 * 66.11703 * 21 20 19 41 41 H 1.08999 * 109.47171 * 44.06529 * 22 19 18 42 42 H 1.09002 * 109.46908 * 284.07103 * 22 19 18 43 43 H 1.09006 * 109.47320 * 299.82825 * 23 22 19 44 44 H 1.09004 * 109.47428 * 59.82812 * 23 22 19 45 45 H 1.08995 * 109.47701 * 299.99995 * 25 24 23 46 46 H 1.09006 * 109.46906 * 60.00649 * 25 24 23 47 47 H 1.09003 * 109.47293 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.7601 1.8372 2.3805 6 6 1.4839 2.4795 2.8597 7 6 1.5359 3.9839 2.5856 8 6 0.2599 4.6264 3.0654 9 1 -0.5111 4.0221 3.5200 10 6 0.0766 5.9854 2.9230 11 7 1.0153 6.7212 2.3690 12 14 -1.5047 6.7819 3.5185 13 1 -2.3932 5.7440 4.1002 14 1 -1.1876 7.7991 4.5529 15 1 -2.1906 7.4358 2.3751 16 7 3.8472 1.6653 3.0777 17 7 4.7434 1.0860 2.3611 18 6 4.2722 0.8559 1.1583 19 7 4.9471 0.2485 0.1114 20 6 5.3584 1.2374 -0.8941 21 6 6.3164 2.2453 -0.2560 22 6 6.1023 -0.5150 0.6022 23 6 6.5796 -1.4754 -0.4889 24 16 8.0091 -2.4145 0.1154 25 6 8.4227 -3.4797 -1.2935 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0895 30 1 2.6212 1.4026 -0.9313 31 1 0.6365 2.0430 2.3311 32 1 1.3711 2.3090 3.9304 33 1 2.3833 4.4204 3.1142 34 1 1.6487 4.1544 1.5149 35 1 0.8862 7.6773 2.2685 36 1 5.8604 0.7305 -1.7182 37 1 4.4791 1.7600 -1.2706 38 1 6.5362 3.0396 -0.9694 39 1 5.8539 2.6735 0.6333 40 1 7.2417 1.7410 0.0227 41 1 5.8129 -1.0837 1.4859 42 1 6.9086 0.1717 0.8600 43 1 5.7743 -2.1641 -0.7446 44 1 6.8661 -0.9068 -1.3737 45 1 7.5712 -4.1181 -1.5287 46 1 8.6631 -2.8612 -2.1583 47 1 9.2824 -4.1001 -1.0399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338926422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:29 Heat of formation + Delta-G solvation = 98.980568 kcal Electronic energy + Delta-G solvation = -25713.671900 eV Core-core repulsion = 22252.896480 eV Total energy + Delta-G solvation = -3460.775420 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.65645 -38.46329 -36.08052 -34.08461 -32.64624 -32.02259 -31.63801 -30.15640 -29.27000 -27.90552 -26.67060 -25.32846 -24.14768 -22.53440 -21.78711 -20.56207 -19.90119 -19.70214 -17.28512 -16.74992 -16.57448 -16.29479 -16.05778 -15.53408 -14.80058 -14.76484 -14.46759 -14.16012 -13.91388 -13.87123 -13.67036 -13.38634 -13.28761 -13.09441 -12.87247 -12.41287 -12.27542 -11.99150 -11.95332 -11.55955 -11.53542 -11.31749 -11.23675 -11.03503 -10.95406 -10.67629 -10.35560 -10.30108 -10.04858 -9.91868 -9.76088 -9.61247 -9.25839 -9.17709 -8.43704 -8.05183 -7.98530 -6.07771 -4.11813 1.24597 1.91215 2.12308 2.25162 2.74896 3.26971 3.27042 3.35303 3.38862 3.79070 4.39339 4.47376 4.64170 4.66334 4.73658 4.76082 4.78997 4.80109 4.96263 5.03760 5.11184 5.15647 5.25769 5.28465 5.32033 5.32911 5.37784 5.52454 5.59157 5.68085 5.74202 5.83835 5.85016 6.14773 6.23204 6.31796 6.44336 6.44740 6.55837 6.60677 6.67562 6.93333 7.42889 7.52657 7.67093 7.89825 8.27494 8.94610 9.20257 9.53045 11.03310 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.021022 B = 0.002720 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.637045 B =10291.525649 C =10773.225842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.175 4.175 3 C 0.138 3.862 4 N -0.468 5.468 5 C 0.218 3.782 6 C -0.032 4.032 7 C 0.032 3.968 8 C -0.523 4.523 9 H 0.060 0.940 10 C 0.059 3.941 11 N -0.892 5.892 12 Si 0.894 3.106 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.284 1.284 16 N -0.296 5.296 17 N -0.318 5.318 18 C 0.334 3.666 19 N -0.451 5.451 20 C 0.049 3.951 21 C -0.191 4.191 22 C 0.085 3.915 23 C -0.083 4.083 24 S -0.251 6.251 25 C -0.121 4.121 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.025 0.975 34 H 0.013 0.987 35 H 0.261 0.739 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.693 -17.951 -12.856 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.194 4.194 3 C 0.016 3.984 4 N -0.162 5.162 5 C -0.049 4.049 6 C -0.072 4.072 7 C -0.006 4.006 8 C -0.561 4.561 9 H 0.078 0.922 10 C -0.143 4.143 11 N -0.531 5.531 12 Si 0.721 3.279 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.211 1.211 16 N -0.135 5.135 17 N -0.162 5.162 18 C -0.023 4.023 19 N -0.175 5.175 20 C -0.079 4.079 21 C -0.249 4.249 22 C -0.043 4.043 23 C -0.231 4.231 24 S -0.027 6.027 25 C -0.290 4.290 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.132 0.868 29 H 0.125 0.875 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.044 0.956 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.112 0.888 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.894 -18.022 -11.009 23.322 hybrid contribution -1.769 0.885 -1.863 2.717 sum 8.125 -17.136 -12.873 22.921 Atomic orbital electron populations 1.24022 0.95606 1.02714 0.97634 1.23030 0.96153 0.97910 1.02324 1.20966 0.92065 0.97768 0.87625 1.46199 1.11100 1.46384 1.12495 1.25566 1.00114 0.98517 0.80694 1.20445 0.86598 0.98660 1.01472 1.19073 0.98125 0.86389 0.97002 1.21175 1.02029 0.92835 1.40050 0.92221 1.25013 0.96694 0.97419 0.95158 1.69975 1.33170 1.06107 1.43841 0.86511 0.83365 0.79471 0.78516 1.19599 1.20906 1.21052 1.74027 0.98054 1.16089 1.25323 1.74550 1.23444 1.17136 1.01053 1.22135 0.84814 1.01494 0.93858 1.58807 1.25393 1.23584 1.09750 1.22375 0.99345 0.92233 0.93906 1.22407 1.00456 0.99827 1.02222 1.21668 0.91220 0.95086 0.96348 1.23382 0.97841 1.00518 1.01405 1.87029 1.40515 1.49614 1.25545 1.23380 1.05242 1.01391 0.98993 0.87567 0.87900 0.86825 0.87475 0.88502 0.91223 0.89295 0.95636 0.96904 0.92923 0.89257 0.90301 0.91482 0.91659 0.91758 0.88844 0.91221 0.89192 0.89854 0.90459 0.90506 0.87999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 14.32 29.01 0.42 -1.27 16 2 C -0.18 -2.02 9.85 -36.03 -0.35 -2.37 16 3 C 0.14 1.82 6.35 -5.19 -0.03 1.79 16 4 N -0.47 -7.77 2.79 -115.37 -0.32 -8.10 16 5 C 0.22 4.34 7.32 -154.02 -1.13 3.21 16 6 C -0.03 -0.65 5.33 -27.88 -0.15 -0.80 16 7 C 0.03 0.81 4.96 -27.88 -0.14 0.67 16 8 C -0.52 -14.12 9.11 -34.44 -0.31 -14.43 16 9 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 12 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 13 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 N -0.30 -6.43 12.18 32.99 0.40 -6.03 16 17 N -0.32 -6.23 11.11 30.31 0.34 -5.90 16 18 C 0.33 5.45 5.52 -318.88 -1.76 3.69 16 19 N -0.45 -5.60 4.70 -174.51 -0.82 -6.42 16 20 C 0.05 0.51 5.83 -3.83 -0.02 0.49 16 21 C -0.19 -2.29 9.29 37.16 0.35 -1.94 16 22 C 0.08 0.99 4.32 -3.82 -0.02 0.97 16 23 C -0.08 -0.72 5.99 37.16 0.22 -0.50 16 24 S -0.25 -2.36 22.38 -107.50 -2.41 -4.76 16 25 C -0.12 -0.71 10.76 101.05 1.09 0.37 16 26 H 0.11 1.12 7.84 -52.48 -0.41 0.71 16 27 H 0.10 0.90 8.06 -52.48 -0.42 0.48 16 28 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 29 H 0.11 1.50 7.40 -51.93 -0.38 1.11 16 30 H 0.10 1.08 6.30 -51.93 -0.33 0.75 16 31 H 0.07 1.28 7.86 -51.93 -0.41 0.87 16 32 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.09 0.70 6.62 -51.93 -0.34 0.36 16 37 H 0.08 0.84 6.37 -51.93 -0.33 0.51 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.04 6.87 -51.93 -0.36 0.69 16 40 H 0.06 0.73 6.53 -51.93 -0.34 0.39 16 41 H 0.09 1.27 7.83 -51.93 -0.41 0.87 16 42 H 0.07 0.88 5.97 -51.93 -0.31 0.57 16 43 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 44 H 0.08 0.62 6.72 -51.92 -0.35 0.27 16 45 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 47 H 0.10 0.51 8.14 -51.92 -0.42 0.08 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -32.08 395.30 -10.81 -42.89 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.74 Total: 0.43 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -1.94 Total: -8.57 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.33 Total: -51.94 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -2.36 SS G_CDS: -2.41 Total: -4.76 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.08 -10.81 -42.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338926422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.873 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds