Wall clock time and date at job start Tue Mar 31 2020 15:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50695 * 119.99862 * 2 1 4 4 N 1.46503 * 109.47227 * 124.99772 * 3 2 1 5 5 C 1.36745 * 127.13874 * 267.46003 * 4 3 2 6 6 C 1.50695 * 126.34393 * 359.96657 * 5 4 3 7 7 C 1.53007 * 109.46956 * 270.28168 * 6 5 4 8 8 C 1.50703 * 109.46942 * 180.02562 * 7 6 5 9 9 H 1.07994 * 120.00219 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99525 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00679 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99720 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46995 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47180 * 119.99738 * 12 10 8 15 15 H 1.48504 * 109.46941 * 239.99635 * 12 10 8 16 16 N 1.30289 * 107.30572 * 180.22480 * 5 4 3 17 17 N 1.28535 * 110.05204 * 359.77528 * 16 5 4 18 18 C 1.31212 * 109.86338 * 0.02562 * 17 16 5 19 19 N 1.38578 * 126.47742 * 179.97438 * 18 17 16 20 20 C 1.46900 * 110.99897 * 254.88285 * 19 18 17 21 21 C 1.52997 * 109.47274 * 61.62431 * 20 19 18 22 22 C 1.46905 * 110.99748 * 18.83343 * 19 18 17 23 23 C 1.52997 * 109.47013 * 164.07065 * 22 19 18 24 24 S 1.81401 * 109.46975 * 179.82887 * 23 22 19 25 25 C 1.81400 * 102.99891 * 179.97438 * 24 23 22 26 26 H 1.08004 * 120.00124 * 0.02562 * 1 2 3 27 27 H 1.08007 * 120.00165 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00124 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47393 * 4.99815 * 3 2 1 30 30 H 1.08996 * 109.47359 * 245.00146 * 3 2 1 31 31 H 1.08998 * 109.47547 * 30.28080 * 6 5 4 32 32 H 1.08999 * 109.47349 * 150.28499 * 6 5 4 33 33 H 1.08998 * 109.46920 * 300.00295 * 7 6 5 34 34 H 1.09003 * 109.46806 * 60.00526 * 7 6 5 35 35 H 0.96997 * 120.00756 * 179.97438 * 11 10 8 36 36 H 1.08998 * 109.47079 * 181.62611 * 20 19 18 37 37 H 1.08997 * 109.47077 * 301.62247 * 20 19 18 38 38 H 1.09003 * 109.46931 * 186.11507 * 21 20 19 39 39 H 1.09001 * 109.47214 * 306.11321 * 21 20 19 40 40 H 1.09005 * 109.47096 * 66.11703 * 21 20 19 41 41 H 1.08999 * 109.47171 * 44.06529 * 22 19 18 42 42 H 1.09002 * 109.46908 * 284.07103 * 22 19 18 43 43 H 1.09006 * 109.47320 * 299.82825 * 23 22 19 44 44 H 1.09004 * 109.47428 * 59.82812 * 23 22 19 45 45 H 1.08995 * 109.47701 * 299.99995 * 25 24 23 46 46 H 1.09006 * 109.46906 * 60.00649 * 25 24 23 47 47 H 1.09003 * 109.47293 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.7601 1.8372 2.3805 6 6 1.4839 2.4795 2.8597 7 6 1.5359 3.9839 2.5856 8 6 0.2599 4.6264 3.0654 9 1 -0.5111 4.0221 3.5200 10 6 0.0766 5.9854 2.9230 11 7 1.0153 6.7212 2.3690 12 14 -1.5047 6.7819 3.5185 13 1 -2.3932 5.7440 4.1002 14 1 -1.1876 7.7991 4.5529 15 1 -2.1906 7.4358 2.3751 16 7 3.8472 1.6653 3.0777 17 7 4.7434 1.0860 2.3611 18 6 4.2722 0.8559 1.1583 19 7 4.9471 0.2485 0.1114 20 6 5.3584 1.2374 -0.8941 21 6 6.3164 2.2453 -0.2560 22 6 6.1023 -0.5150 0.6022 23 6 6.5796 -1.4754 -0.4889 24 16 8.0091 -2.4145 0.1154 25 6 8.4227 -3.4797 -1.2935 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0895 30 1 2.6212 1.4026 -0.9313 31 1 0.6365 2.0430 2.3311 32 1 1.3711 2.3090 3.9304 33 1 2.3833 4.4204 3.1142 34 1 1.6487 4.1544 1.5149 35 1 0.8862 7.6773 2.2685 36 1 5.8604 0.7305 -1.7182 37 1 4.4791 1.7600 -1.2706 38 1 6.5362 3.0396 -0.9694 39 1 5.8539 2.6735 0.6333 40 1 7.2417 1.7410 0.0227 41 1 5.8129 -1.0837 1.4859 42 1 6.9086 0.1717 0.8600 43 1 5.7743 -2.1641 -0.7446 44 1 6.8661 -0.9068 -1.3737 45 1 7.5712 -4.1181 -1.5287 46 1 8.6631 -2.8612 -2.1583 47 1 9.2824 -4.1001 -1.0399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338926422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:28 Heat of formation + Delta-G solvation = 82.244963 kcal Electronic energy + Delta-G solvation = -25714.397610 eV Core-core repulsion = 22252.896480 eV Total energy + Delta-G solvation = -3461.501130 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.06226 -39.52878 -37.25774 -35.97240 -33.91320 -33.62061 -32.63387 -31.44893 -29.79610 -29.31700 -27.80214 -27.11649 -25.16641 -23.70111 -23.60337 -21.72336 -21.26911 -20.75818 -18.66178 -18.26946 -17.81901 -17.57285 -17.02941 -16.58136 -16.40388 -15.82624 -15.70530 -15.35647 -14.95793 -14.78611 -14.66326 -14.49786 -14.38698 -14.24089 -13.99843 -13.76771 -13.44473 -13.19361 -12.94417 -12.89286 -12.75509 -12.69828 -12.51255 -12.45223 -12.41101 -12.09973 -11.95866 -11.79556 -11.53585 -11.29269 -11.09165 -10.94809 -10.59196 -10.57822 -10.48321 -9.42247 -8.70297 -8.20735 -6.32869 0.54845 0.73623 0.97269 1.42258 1.44180 1.56724 1.60096 1.69462 1.78701 2.41797 2.68521 3.13654 3.45452 3.59106 3.68981 3.83073 3.83394 3.84085 3.98769 4.05714 4.13248 4.26612 4.30397 4.37881 4.39303 4.41366 4.52996 4.54716 4.63862 4.72245 4.77775 4.82899 4.84555 4.88773 4.92605 4.97853 5.06260 5.14771 5.42841 5.46595 5.55003 5.58874 5.60372 5.68793 5.77998 6.13839 6.18412 6.82978 7.37215 7.73766 8.91463 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.021022 B = 0.002720 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.637045 B =10291.525649 C =10773.225842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.186 4.186 3 C 0.133 3.867 4 N -0.464 5.464 5 C 0.202 3.798 6 C -0.014 4.014 7 C 0.046 3.954 8 C -0.536 4.536 9 H 0.072 0.928 10 C 0.001 3.999 11 N -0.934 5.934 12 Si 0.967 3.033 13 H -0.256 1.256 14 H -0.284 1.284 15 H -0.277 1.277 16 N -0.334 5.334 17 N -0.353 5.353 18 C 0.354 3.646 19 N -0.439 5.439 20 C 0.048 3.952 21 C -0.186 4.186 22 C 0.089 3.911 23 C -0.063 4.063 24 S -0.311 6.311 25 C -0.106 4.106 26 H 0.104 0.896 27 H 0.124 0.876 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.093 0.907 32 H 0.086 0.914 33 H -0.019 1.019 34 H -0.005 1.005 35 H 0.263 0.737 36 H 0.131 0.869 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.018 0.982 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.589 -19.642 -15.215 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.205 4.205 3 C 0.012 3.988 4 N -0.157 5.157 5 C -0.067 4.067 6 C -0.054 4.054 7 C 0.007 3.993 8 C -0.574 4.574 9 H 0.090 0.910 10 C -0.197 4.197 11 N -0.574 5.574 12 Si 0.792 3.208 13 H -0.180 1.180 14 H -0.210 1.210 15 H -0.203 1.203 16 N -0.172 5.172 17 N -0.197 5.197 18 C -0.003 4.003 19 N -0.164 5.164 20 C -0.078 4.078 21 C -0.245 4.245 22 C -0.039 4.039 23 C -0.211 4.211 24 S -0.087 6.087 25 C -0.274 4.274 26 H 0.122 0.878 27 H 0.142 0.858 28 H 0.136 0.864 29 H 0.115 0.885 30 H 0.137 0.863 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.000 1.000 34 H 0.014 0.986 35 H 0.072 0.928 36 H 0.149 0.851 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.037 0.963 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.117 0.883 44 H 0.123 0.877 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.783 -19.737 -13.387 25.415 hybrid contribution -1.333 1.358 -1.216 2.258 sum 7.451 -18.380 -14.603 24.629 Atomic orbital electron populations 1.24218 0.95236 1.03668 0.95481 1.22905 0.96435 0.96920 1.04201 1.21245 0.91853 0.98609 0.87128 1.46339 1.11589 1.45533 1.12247 1.25277 0.99571 0.99737 0.82155 1.20124 0.88023 0.95557 1.01710 1.18820 0.95957 0.89444 0.95057 1.21602 1.02693 0.93410 1.39716 0.90987 1.25981 1.00299 0.98197 0.95214 1.70121 1.35529 1.06484 1.45274 0.85365 0.79045 0.78468 0.77972 1.17977 1.21034 1.20269 1.73908 0.99031 1.17181 1.27128 1.74455 1.23709 1.18822 1.02689 1.22530 0.84727 0.99191 0.93851 1.59038 1.25536 1.23422 1.08377 1.22569 0.99501 0.91847 0.93893 1.22368 1.00667 1.00697 1.00742 1.21609 0.90303 0.95013 0.96929 1.23214 0.97530 0.99911 1.00444 1.87299 1.41240 1.51236 1.28958 1.23432 1.05948 1.00762 0.97248 0.87768 0.85762 0.86430 0.88540 0.86342 0.88838 0.89593 1.00047 0.98627 0.92808 0.85116 0.89991 0.89815 0.96267 0.91198 0.91312 0.92412 0.88258 0.87689 0.89369 0.89067 0.87119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 14.32 67.78 0.97 -1.76 16 2 C -0.19 -3.92 9.85 25.65 0.25 -3.67 16 3 C 0.13 3.36 6.35 85.63 0.54 3.90 16 4 N -0.46 -15.54 2.79 -518.93 -1.45 -16.99 16 5 C 0.20 8.29 7.32 137.64 1.01 9.30 16 6 C -0.01 -0.60 5.33 29.85 0.16 -0.44 16 7 C 0.05 2.38 4.96 29.85 0.15 2.53 16 8 C -0.54 -29.29 9.11 25.60 0.23 -29.06 16 9 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 10 C 0.00 0.06 5.46 84.65 0.46 0.52 16 11 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 12 Si 0.97 43.06 29.54 68.60 2.03 45.08 16 13 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 15 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 16 N -0.33 -15.25 12.18 -49.54 -0.60 -15.86 16 17 N -0.35 -14.50 11.11 -58.01 -0.64 -15.15 16 18 C 0.35 11.74 5.52 260.11 1.44 13.17 16 19 N -0.44 -10.39 4.70 -706.03 -3.32 -13.71 16 20 C 0.05 0.91 5.83 86.30 0.50 1.41 16 21 C -0.19 -4.37 9.29 71.98 0.67 -3.70 16 22 C 0.09 2.03 4.32 86.30 0.37 2.40 16 23 C -0.06 -0.95 5.99 71.98 0.43 -0.52 16 24 S -0.31 -5.45 22.38 -56.49 -1.26 -6.72 16 25 C -0.11 -0.95 10.76 113.37 1.22 0.27 16 26 H 0.10 1.98 7.84 -2.91 -0.02 1.95 16 27 H 0.12 1.77 8.06 -2.91 -0.02 1.75 16 28 H 0.12 2.43 8.06 -2.91 -0.02 2.40 16 29 H 0.10 2.66 7.40 -2.39 -0.02 2.65 16 30 H 0.12 2.43 6.30 -2.39 -0.02 2.41 16 31 H 0.09 3.40 7.86 -2.39 -0.02 3.38 16 32 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 33 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 34 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 36 H 0.13 1.48 6.62 -2.39 -0.02 1.46 16 37 H 0.08 1.55 6.37 -2.39 -0.02 1.53 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.02 0.62 6.87 -2.39 -0.02 0.60 16 40 H 0.07 1.54 6.53 -2.38 -0.02 1.53 16 41 H 0.07 1.92 7.83 -2.39 -0.02 1.90 16 42 H 0.06 1.46 5.97 -2.39 -0.01 1.45 16 43 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.10 1.15 6.72 -2.39 -0.02 1.14 16 45 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -73.45 395.30 4.38 -69.07 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.94 Total: 15.90 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 8.41 Total: -5.63 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -5.73 Total: -117.70 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -5.45 SS G_CDS: -1.26 Total: -6.72 kcal Total: -73.45 4.38 -69.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338926422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.319 kcal (2) G-P(sol) polarization free energy of solvation -73.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds