Wall clock time and date at job start Tue Mar 31 2020 15:08:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46504 * 109.46999 * 2 1
4 4 C 1.36739 * 127.13674 * 275.51118 * 3 2 1
5 5 C 1.50696 * 126.34945 * 0.03023 * 4 3 2
6 6 C 1.52992 * 109.47318 * 270.25725 * 5 4 3
7 7 C 1.50709 * 109.47225 * 180.02562 * 6 5 4
8 8 H 1.07994 * 119.99918 * 359.97438 * 7 6 5
9 9 C 1.37875 * 120.00064 * 180.02562 * 7 6 5
10 10 N 1.31517 * 120.00001 * 359.97438 * 9 7 6
11 11 Si 1.86794 * 120.00014 * 179.97438 * 9 7 6
12 12 H 1.48506 * 109.47123 * 0.02562 * 11 9 7
13 13 H 1.48501 * 109.47087 * 119.99451 * 11 9 7
14 14 H 1.48495 * 109.47129 * 239.99746 * 11 9 7
15 15 N 1.30297 * 107.29930 * 180.22805 * 4 3 2
16 16 N 1.28524 * 110.05860 * 359.77080 * 15 4 3
17 17 C 1.31218 * 109.85754 * 359.97438 * 16 15 4
18 18 N 1.38581 * 126.47322 * 179.97438 * 17 16 15
19 19 C 1.46476 * 110.99725 * 293.96687 * 18 17 16
20 20 C 1.53248 * 109.79230 * 197.80366 * 19 18 17
21 21 S 1.81906 * 108.50433 * 297.89213 * 20 19 18
22 22 C 1.81894 * 101.86510 * 51.41395 * 21 20 19
23 23 H 1.08999 * 109.63454 * 68.36143 * 22 21 20
24 24 C 1.53007 * 109.79464 * 188.85279 * 22 21 20
25 25 C 1.46462 * 111.00233 * 59.94461 * 18 17 16
26 26 H 1.09004 * 109.41181 * 282.35875 * 25 18 17
27 27 C 1.53007 * 109.40549 * 42.19520 * 25 18 17
28 28 H 1.08999 * 109.47249 * 294.82143 * 1 2 3
29 29 H 1.08998 * 109.47579 * 54.82468 * 1 2 3
30 30 H 1.09001 * 109.47393 * 174.82457 * 1 2 3
31 31 H 1.09001 * 109.46612 * 240.00263 * 2 1 3
32 32 H 1.08997 * 109.47374 * 120.00244 * 2 1 3
33 33 H 1.09000 * 109.47092 * 30.25976 * 5 4 3
34 34 H 1.08999 * 109.47049 * 150.25472 * 5 4 3
35 35 H 1.09004 * 109.47084 * 299.99682 * 6 5 4
36 36 H 1.08999 * 109.47267 * 59.99880 * 6 5 4
37 37 H 0.96998 * 119.99722 * 180.02562 * 10 9 7
38 38 H 1.08998 * 109.40516 * 317.88406 * 19 18 17
39 39 H 1.09004 * 109.40400 * 77.72620 * 19 18 17
40 40 H 1.09000 * 109.63049 * 57.66270 * 20 19 18
41 41 H 1.09002 * 109.62908 * 178.25387 * 20 19 18
42 42 H 1.08999 * 109.46613 * 179.11343 * 24 22 21
43 43 H 1.08996 * 109.47013 * 299.11398 * 24 22 21
44 44 H 1.08992 * 109.46957 * 59.11495 * 24 22 21
45 45 H 1.09004 * 109.46530 * 64.78313 * 27 25 18
46 46 H 1.08995 * 109.46903 * 184.78319 * 27 25 18
47 47 H 1.09002 * 109.46846 * 304.78805 * 27 25 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.1948 2.1945 -1.0850
5 6 1.9206 1.8371 -2.5231
6 6 3.1792 1.2311 -3.1470
7 6 2.9052 0.8743 -4.5853
8 1 1.9306 1.0607 -5.0116
9 6 3.8984 0.3089 -5.3566
10 7 5.0851 0.0814 -4.8373
11 14 3.5585 -0.1340 -7.1392
12 1 2.1569 0.2204 -7.4787
13 1 4.4863 0.6180 -8.0217
14 1 3.7621 -1.5919 -7.3344
15 7 2.6480 3.3342 -0.6454
16 7 2.7644 3.2984 0.6341
17 6 2.3881 2.1242 1.0831
18 7 2.3750 1.7140 2.4067
19 6 3.7350 1.6345 2.9450
20 6 3.7406 0.7792 4.2166
21 16 2.6881 1.5876 5.4607
22 6 1.1514 1.8642 4.5278
23 1 0.6749 0.9073 4.3149
24 6 0.2002 2.7415 5.3444
25 6 1.5009 2.5691 3.2128
26 1 2.0116 3.5074 3.4295
27 6 0.2150 2.8581 2.4354
28 1 -0.3634 0.4314 0.9327
29 1 -0.3634 0.5920 -0.8400
30 1 -0.3634 -1.0235 -0.0927
31 1 1.8932 -0.5138 -0.8900
32 1 1.8934 -0.5138 0.8899
33 1 1.1075 1.1126 -2.5687
34 1 1.6385 2.7348 -3.0731
35 1 3.9923 1.9557 -3.1014
36 1 3.4613 0.3334 -2.5969
37 1 5.7839 -0.3160 -5.3801
38 1 4.3927 1.1834 2.2021
39 1 4.0900 2.6376 3.1816
40 1 3.3484 -0.2127 3.9924
41 1 4.7585 0.6962 4.5976
42 1 -0.7120 2.9168 4.7742
43 1 -0.0466 2.2377 6.2789
44 1 0.6817 3.6948 5.5617
45 1 -0.3376 1.9300 2.2895
46 1 -0.3987 3.5621 2.9972
47 1 0.4657 3.2880 1.4656
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001339654443.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:08:05
Heat of formation + Delta-G solvation = 74.374867 kcal
Electronic energy + Delta-G solvation = -26524.663835 eV
Core-core repulsion = 23062.821432 eV
Total energy + Delta-G solvation = -3461.842403 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 324.168 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-42.75362 -38.97428 -35.56016 -34.62594 -33.98288 -32.12758 -31.19899 -30.36377
-29.10045 -27.95896 -25.58087 -25.01533 -23.92322 -22.97356 -21.91134 -21.35270
-20.10951 -19.78788 -17.18530 -17.05639 -16.73337 -16.42141 -15.91780 -15.38273
-14.89926 -14.57581 -14.48633 -14.23792 -14.02051 -13.60054 -13.22378 -13.06336
-12.94241 -12.85109 -12.67949 -12.46525 -12.29528 -12.25227 -12.20465 -11.98257
-11.47403 -11.30386 -11.24634 -11.09436 -11.03971 -10.88767 -10.68830 -10.43583
-10.02845 -9.96400 -9.91533 -9.76764 -9.25615 -8.94554 -8.46119 -8.44605
-7.95727 -6.09439 -4.13671 1.44445 2.02524 2.21001 2.39658 3.20207
3.25907 3.34129 3.37391 3.50048 4.26574 4.37792 4.45142 4.66419
4.68652 4.76785 4.87114 4.92731 4.98285 4.99265 5.03028 5.09373
5.21829 5.26760 5.27492 5.36681 5.44155 5.45300 5.47062 5.53217
5.55603 5.63480 5.69098 5.77462 5.85338 5.92916 6.04872 6.29372
6.30776 6.42101 6.53360 6.63332 6.88280 7.39513 7.50483 7.64081
7.87790 8.25121 8.92614 9.11054 9.51316 11.01671
Molecular weight = 324.17amu
Principal moments of inertia in cm(-1)
A = 0.023953 B = 0.002959 C = 0.002870
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1168.685111 B = 9461.053592 C = 9753.151246
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.107 3.893
3 N -0.461 5.461
4 C 0.218 3.782
5 C -0.032 4.032
6 C 0.032 3.968
7 C -0.524 4.524
8 H 0.059 0.941
9 C 0.059 3.941
10 N -0.892 5.892
11 Si 0.894 3.106
12 H -0.272 1.272
13 H -0.283 1.283
14 H -0.284 1.284
15 N -0.297 5.297
16 N -0.311 5.311
17 C 0.329 3.671
18 N -0.471 5.471
19 C 0.067 3.933
20 C -0.074 4.074
21 S -0.268 6.268
22 C -0.038 4.038
23 H 0.096 0.904
24 C -0.135 4.135
25 C 0.101 3.899
26 H 0.071 0.929
27 C -0.150 4.150
28 H 0.060 0.940
29 H 0.064 0.936
30 H 0.077 0.923
31 H 0.101 0.899
32 H 0.095 0.905
33 H 0.070 0.930
34 H 0.089 0.911
35 H 0.025 0.975
36 H 0.013 0.987
37 H 0.261 0.739
38 H 0.089 0.911
39 H 0.066 0.934
40 H 0.093 0.907
41 H 0.113 0.887
42 H 0.075 0.925
43 H 0.067 0.933
44 H 0.067 0.933
45 H 0.062 0.938
46 H 0.071 0.929
47 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.016 -0.663 20.218 22.572
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C -0.016 4.016
3 N -0.154 5.154
4 C -0.049 4.049
5 C -0.072 4.072
6 C -0.006 4.006
7 C -0.562 4.562
8 H 0.078 0.922
9 C -0.143 4.143
10 N -0.530 5.530
11 Si 0.722 3.278
12 H -0.196 1.196
13 H -0.209 1.209
14 H -0.210 1.210
15 N -0.137 5.137
16 N -0.155 5.155
17 C -0.027 4.027
18 N -0.197 5.197
19 C -0.062 4.062
20 C -0.223 4.223
21 S -0.040 6.040
22 C -0.168 4.168
23 H 0.115 0.885
24 C -0.193 4.193
25 C -0.008 4.008
26 H 0.089 0.911
27 C -0.209 4.209
28 H 0.079 0.921
29 H 0.084 0.916
30 H 0.095 0.905
31 H 0.119 0.881
32 H 0.113 0.887
33 H 0.089 0.911
34 H 0.107 0.893
35 H 0.044 0.956
36 H 0.032 0.968
37 H 0.071 0.929
38 H 0.107 0.893
39 H 0.085 0.915
40 H 0.111 0.889
41 H 0.131 0.869
42 H 0.094 0.906
43 H 0.086 0.914
44 H 0.086 0.914
45 H 0.081 0.919
46 H 0.090 0.910
47 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -9.261 0.446 21.311 23.240
hybrid contribution -0.318 -1.422 -2.163 2.608
sum -9.579 -0.976 19.148 21.432
Atomic orbital electron populations
1.22147 0.94151 1.03215 1.02822 1.21826 0.95513 0.79141 1.05140
1.46418 1.49040 1.13664 1.06302 1.25626 0.99567 0.87167 0.92512
1.20468 1.02106 1.01971 0.82688 1.19068 0.90766 0.95650 0.95123
1.21166 0.98176 1.41086 0.95758 0.92234 1.25013 0.95018 0.95632
0.98603 1.69980 1.02997 1.43559 1.36512 0.86503 0.78461 0.78025
0.84831 1.19606 1.20900 1.21020 1.74073 1.18355 1.19164 1.02130
1.74533 1.19859 1.16578 1.04574 1.21723 1.04615 0.89132 0.87271
1.57727 1.12333 1.52848 0.96746 1.22275 0.87510 1.00545 0.95891
1.23531 1.02158 1.01355 0.95229 1.86959 1.14149 1.79472 1.23403
1.23276 0.95301 1.02835 0.95364 0.88539 1.21681 0.98310 0.99631
0.99696 1.21838 0.93852 0.93986 0.91098 0.91056 1.22063 0.95997
1.02081 1.00773 0.92137 0.91649 0.90459 0.88071 0.88709 0.91138
0.89289 0.95649 0.96828 0.92899 0.89294 0.91523 0.88858 0.86855
0.90589 0.91406 0.91409 0.91934 0.91012 0.91604
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.69 10.24 37.16 0.38 -1.31 16
2 C 0.11 1.34 6.57 -4.04 -0.03 1.31 16
3 N -0.46 -7.36 2.81 -114.08 -0.32 -7.68 16
4 C 0.22 4.18 7.32 -154.02 -1.13 3.05 16
5 C -0.03 -0.64 5.46 -27.89 -0.15 -0.79 16
6 C 0.03 0.80 4.96 -27.88 -0.14 0.66 16
7 C -0.52 -14.06 9.11 -34.44 -0.31 -14.38 16
8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16
9 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
10 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16
11 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16
12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16
13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
15 N -0.30 -6.24 12.18 32.99 0.40 -5.84 16
16 N -0.31 -5.93 11.71 30.31 0.35 -5.57 16
17 C 0.33 5.18 4.33 -318.88 -1.38 3.80 16
18 N -0.47 -5.83 4.31 -167.31 -0.72 -6.55 16
19 C 0.07 0.77 5.37 -3.93 -0.02 0.75 16
20 C -0.07 -0.68 6.68 37.29 0.25 -0.43 16
21 S -0.27 -2.67 21.78 -107.50 -2.34 -5.01 16
22 C -0.04 -0.34 2.87 -26.60 -0.08 -0.42 16
23 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16
24 C -0.13 -0.97 8.84 37.16 0.33 -0.64 16
25 C 0.10 1.11 1.98 -67.82 -0.13 0.98 16
26 H 0.07 0.90 7.91 -51.93 -0.41 0.48 16
27 C -0.15 -1.61 8.26 37.16 0.31 -1.30 16
28 H 0.06 0.59 6.72 -51.93 -0.35 0.24 16
29 H 0.06 0.74 7.87 -51.93 -0.41 0.33 16
30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
31 H 0.10 1.38 8.07 -51.93 -0.42 0.96 16
32 H 0.09 1.05 8.11 -51.93 -0.42 0.63 16
33 H 0.07 1.24 7.71 -51.93 -0.40 0.84 16
34 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16
35 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16
36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16
37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16
38 H 0.09 1.11 7.93 -51.93 -0.41 0.70 16
39 H 0.07 0.84 7.91 -51.93 -0.41 0.43 16
40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16
41 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16
42 H 0.08 0.47 6.50 -51.93 -0.34 0.13 16
43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
45 H 0.06 0.62 6.72 -51.93 -0.35 0.27 16
46 H 0.07 0.62 6.65 -51.93 -0.35 0.28 16
47 H 0.07 0.92 6.30 -51.93 -0.33 0.60 16
LS Contribution 382.12 15.07 5.76 5.76
Total: -1.00 -31.38 382.12 -11.29 -42.67
By element:
Atomic # 1 Polarization: 6.85 SS G_CDS: -7.94 Total: -1.09 kcal
Atomic # 6 Polarization: -4.98 SS G_CDS: -2.20 Total: -7.18 kcal
Atomic # 7 Polarization: -51.52 SS G_CDS: 0.45 Total: -51.07 kcal
Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal
Atomic # 16 Polarization: -2.67 SS G_CDS: -2.34 Total: -5.01 kcal
Total LS contribution 5.76 Total: 5.76 kcal
Total: -31.38 -11.29 -42.67 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001339654443.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.050 kcal
(2) G-P(sol) polarization free energy of solvation -31.383 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.667 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.292 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.675 kcal
(6) G-S(sol) free energy of system = (1) + (5) 74.375 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds