Wall clock time and date at job start Tue Mar 31 2020 15:08:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46504 * 109.46999 * 2 1
4 4 C 1.36739 * 127.13674 * 275.51118 * 3 2 1
5 5 C 1.50696 * 126.34945 * 0.03023 * 4 3 2
6 6 C 1.52992 * 109.47318 * 270.25725 * 5 4 3
7 7 C 1.50709 * 109.47225 * 180.02562 * 6 5 4
8 8 H 1.07994 * 119.99918 * 359.97438 * 7 6 5
9 9 C 1.37875 * 120.00064 * 180.02562 * 7 6 5
10 10 N 1.31517 * 120.00001 * 359.97438 * 9 7 6
11 11 Si 1.86794 * 120.00014 * 179.97438 * 9 7 6
12 12 H 1.48506 * 109.47123 * 0.02562 * 11 9 7
13 13 H 1.48501 * 109.47087 * 119.99451 * 11 9 7
14 14 H 1.48495 * 109.47129 * 239.99746 * 11 9 7
15 15 N 1.30297 * 107.29930 * 180.22805 * 4 3 2
16 16 N 1.28524 * 110.05860 * 359.77080 * 15 4 3
17 17 C 1.31218 * 109.85754 * 359.97438 * 16 15 4
18 18 N 1.38581 * 126.47322 * 179.97438 * 17 16 15
19 19 C 1.46476 * 110.99725 * 293.96687 * 18 17 16
20 20 C 1.53248 * 109.79230 * 197.80366 * 19 18 17
21 21 S 1.81906 * 108.50433 * 297.89213 * 20 19 18
22 22 C 1.81894 * 101.86510 * 51.41395 * 21 20 19
23 23 H 1.08999 * 109.63454 * 68.36143 * 22 21 20
24 24 C 1.53007 * 109.79464 * 188.85279 * 22 21 20
25 25 C 1.46462 * 111.00233 * 59.94461 * 18 17 16
26 26 H 1.09004 * 109.41181 * 282.35875 * 25 18 17
27 27 C 1.53007 * 109.40549 * 42.19520 * 25 18 17
28 28 H 1.08999 * 109.47249 * 294.82143 * 1 2 3
29 29 H 1.08998 * 109.47579 * 54.82468 * 1 2 3
30 30 H 1.09001 * 109.47393 * 174.82457 * 1 2 3
31 31 H 1.09001 * 109.46612 * 240.00263 * 2 1 3
32 32 H 1.08997 * 109.47374 * 120.00244 * 2 1 3
33 33 H 1.09000 * 109.47092 * 30.25976 * 5 4 3
34 34 H 1.08999 * 109.47049 * 150.25472 * 5 4 3
35 35 H 1.09004 * 109.47084 * 299.99682 * 6 5 4
36 36 H 1.08999 * 109.47267 * 59.99880 * 6 5 4
37 37 H 0.96998 * 119.99722 * 180.02562 * 10 9 7
38 38 H 1.08998 * 109.40516 * 317.88406 * 19 18 17
39 39 H 1.09004 * 109.40400 * 77.72620 * 19 18 17
40 40 H 1.09000 * 109.63049 * 57.66270 * 20 19 18
41 41 H 1.09002 * 109.62908 * 178.25387 * 20 19 18
42 42 H 1.08999 * 109.46613 * 179.11343 * 24 22 21
43 43 H 1.08996 * 109.47013 * 299.11398 * 24 22 21
44 44 H 1.08992 * 109.46957 * 59.11495 * 24 22 21
45 45 H 1.09004 * 109.46530 * 64.78313 * 27 25 18
46 46 H 1.08995 * 109.46903 * 184.78319 * 27 25 18
47 47 H 1.09002 * 109.46846 * 304.78805 * 27 25 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.1948 2.1945 -1.0850
5 6 1.9206 1.8371 -2.5231
6 6 3.1792 1.2311 -3.1470
7 6 2.9052 0.8743 -4.5853
8 1 1.9306 1.0607 -5.0116
9 6 3.8984 0.3089 -5.3566
10 7 5.0851 0.0814 -4.8373
11 14 3.5585 -0.1340 -7.1392
12 1 2.1569 0.2204 -7.4787
13 1 4.4863 0.6180 -8.0217
14 1 3.7621 -1.5919 -7.3344
15 7 2.6480 3.3342 -0.6454
16 7 2.7644 3.2984 0.6341
17 6 2.3881 2.1242 1.0831
18 7 2.3750 1.7140 2.4067
19 6 3.7350 1.6345 2.9450
20 6 3.7406 0.7792 4.2166
21 16 2.6881 1.5876 5.4607
22 6 1.1514 1.8642 4.5278
23 1 0.6749 0.9073 4.3149
24 6 0.2002 2.7415 5.3444
25 6 1.5009 2.5691 3.2128
26 1 2.0116 3.5074 3.4295
27 6 0.2150 2.8581 2.4354
28 1 -0.3634 0.4314 0.9327
29 1 -0.3634 0.5920 -0.8400
30 1 -0.3634 -1.0235 -0.0927
31 1 1.8932 -0.5138 -0.8900
32 1 1.8934 -0.5138 0.8899
33 1 1.1075 1.1126 -2.5687
34 1 1.6385 2.7348 -3.0731
35 1 3.9923 1.9557 -3.1014
36 1 3.4613 0.3334 -2.5969
37 1 5.7839 -0.3160 -5.3801
38 1 4.3927 1.1834 2.2021
39 1 4.0900 2.6376 3.1816
40 1 3.3484 -0.2127 3.9924
41 1 4.7585 0.6962 4.5976
42 1 -0.7120 2.9168 4.7742
43 1 -0.0466 2.2377 6.2789
44 1 0.6817 3.6948 5.5617
45 1 -0.3376 1.9300 2.2895
46 1 -0.3987 3.5621 2.9972
47 1 0.4657 3.2880 1.4656
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001339654443.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:08:04
Heat of formation + Delta-G solvation = 57.834591 kcal
Electronic energy + Delta-G solvation = -26525.381075 eV
Core-core repulsion = 23062.821432 eV
Total energy + Delta-G solvation = -3462.559643 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 324.168 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-44.12661 -39.98819 -36.84804 -35.95691 -35.33476 -33.80269 -32.37151 -31.45592
-30.24560 -29.21265 -27.22317 -26.04246 -25.02530 -24.05388 -23.54573 -22.43202
-21.42855 -21.00174 -18.62454 -18.23903 -17.97799 -17.71411 -17.11507 -16.61414
-16.33884 -15.79893 -15.67766 -15.17172 -14.96534 -14.82947 -14.80163 -14.32574
-14.02603 -13.94282 -13.72137 -13.52889 -13.35013 -13.21795 -13.07690 -13.00027
-12.88716 -12.81077 -12.59779 -12.37765 -12.28395 -12.12065 -12.05829 -11.78903
-11.68705 -11.53982 -11.29322 -11.10082 -10.75777 -10.58928 -10.09582 -9.94593
-8.74850 -8.21388 -6.33507 0.67721 0.69716 1.18248 1.42163 1.43930
1.44641 1.56387 1.73588 2.40656 2.44204 3.13291 3.37288 3.48703
3.57296 3.67296 3.83485 3.94483 3.95648 4.04974 4.06569 4.13225
4.22667 4.28308 4.33470 4.37268 4.49225 4.53383 4.62347 4.66636
4.73258 4.74996 4.79678 4.81266 4.86005 4.86597 4.91607 5.03005
5.15651 5.21703 5.26156 5.43211 5.49575 5.55927 5.57581 5.77535
6.13095 6.17505 6.82598 7.36768 7.67943 8.90876
Molecular weight = 324.17amu
Principal moments of inertia in cm(-1)
A = 0.023953 B = 0.002959 C = 0.002870
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1168.685111 B = 9461.053592 C = 9753.151246
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.099 3.901
3 N -0.456 5.456
4 C 0.203 3.797
5 C -0.015 4.015
6 C 0.044 3.956
7 C -0.537 4.537
8 H 0.072 0.928
9 C 0.001 3.999
10 N -0.934 5.934
11 Si 0.967 3.033
12 H -0.256 1.256
13 H -0.284 1.284
14 H -0.278 1.278
15 N -0.333 5.333
16 N -0.345 5.345
17 C 0.353 3.647
18 N -0.461 5.461
19 C 0.066 3.934
20 C -0.062 4.062
21 S -0.285 6.285
22 C -0.027 4.027
23 H 0.106 0.894
24 C -0.132 4.132
25 C 0.102 3.898
26 H 0.053 0.947
27 C -0.144 4.144
28 H 0.068 0.932
29 H 0.053 0.947
30 H 0.103 0.897
31 H 0.089 0.911
32 H 0.113 0.887
33 H 0.096 0.904
34 H 0.087 0.913
35 H -0.019 1.019
36 H -0.005 1.005
37 H 0.263 0.737
38 H 0.077 0.923
39 H 0.053 0.947
40 H 0.104 0.896
41 H 0.129 0.871
42 H 0.091 0.909
43 H 0.077 0.923
44 H 0.061 0.939
45 H 0.075 0.925
46 H 0.093 0.907
47 H 0.030 0.970
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.280 -2.153 21.154 24.555
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.022 4.022
3 N -0.148 5.148
4 C -0.065 4.065
5 C -0.055 4.055
6 C 0.006 3.994
7 C -0.575 4.575
8 H 0.091 0.909
9 C -0.197 4.197
10 N -0.574 5.574
11 Si 0.791 3.209
12 H -0.179 1.179
13 H -0.210 1.210
14 H -0.203 1.203
15 N -0.173 5.173
16 N -0.189 5.189
17 C -0.005 4.005
18 N -0.187 5.187
19 C -0.062 4.062
20 C -0.211 4.211
21 S -0.057 6.057
22 C -0.156 4.156
23 H 0.124 0.876
24 C -0.191 4.191
25 C -0.007 4.007
26 H 0.071 0.929
27 C -0.203 4.203
28 H 0.087 0.913
29 H 0.072 0.928
30 H 0.122 0.878
31 H 0.107 0.893
32 H 0.131 0.869
33 H 0.114 0.886
34 H 0.106 0.894
35 H 0.000 1.000
36 H 0.013 0.987
37 H 0.072 0.928
38 H 0.095 0.905
39 H 0.071 0.929
40 H 0.122 0.878
41 H 0.147 0.853
42 H 0.109 0.891
43 H 0.096 0.904
44 H 0.081 0.919
45 H 0.094 0.906
46 H 0.112 0.888
47 H 0.049 0.951
Dipole moment (debyes) X Y Z Total
from point charges -11.549 -1.050 22.263 25.103
hybrid contribution 0.419 -0.950 -2.337 2.557
sum -11.131 -2.000 19.927 22.912
Atomic orbital electron populations
1.22112 0.91808 1.04757 1.02751 1.22146 0.97410 0.77178 1.05474
1.46575 1.48356 1.14518 1.05379 1.25318 1.00666 0.87648 0.92882
1.20148 1.00201 1.02121 0.83014 1.18825 0.91738 0.93824 0.95046
1.21612 0.98718 1.40507 0.96645 0.90935 1.25982 0.94701 0.95545
1.03464 1.70126 1.04166 1.44708 1.38443 0.85365 0.78909 0.77777
0.78801 1.17925 1.21020 1.20344 1.73960 1.19286 1.20677 1.03339
1.74447 1.21870 1.18642 1.03954 1.22022 1.01823 0.88099 0.88508
1.58060 1.12994 1.52508 0.95176 1.22292 0.86787 1.00361 0.96793
1.23490 1.03192 1.00943 0.93464 1.87081 1.15038 1.79696 1.23836
1.23275 0.95044 1.03320 0.93961 0.87581 1.21707 0.98264 0.99038
1.00055 1.21909 0.93467 0.93337 0.91968 0.92909 1.22029 0.96122
1.03041 0.99121 0.91326 0.92776 0.87824 0.89259 0.86857 0.88571
0.89437 1.00016 0.98708 0.92820 0.90499 0.92862 0.87765 0.85285
0.89052 0.90409 0.91945 0.90624 0.88812 0.95077
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.81 10.24 71.98 0.74 -2.08 16
2 C 0.10 2.37 6.57 86.38 0.57 2.93 16
3 N -0.46 -14.56 2.81 -514.85 -1.45 -16.01 16
4 C 0.20 8.01 7.32 137.64 1.01 9.02 16
5 C -0.02 -0.61 5.46 29.84 0.16 -0.45 16
6 C 0.04 2.27 4.96 29.85 0.15 2.42 16
7 C -0.54 -29.08 9.11 25.60 0.23 -28.84 16
8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16
9 C 0.00 0.06 5.46 84.65 0.46 0.52 16
10 N -0.93 -56.15 13.29 21.45 0.28 -55.86 16
11 Si 0.97 42.83 29.54 68.60 2.03 44.86 16
12 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16
13 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
14 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16
15 N -0.33 -14.57 12.18 -49.54 -0.60 -15.17 16
16 N -0.35 -13.64 11.71 -58.01 -0.68 -14.32 16
17 C 0.35 11.19 4.33 260.11 1.13 12.32 16
18 N -0.46 -11.05 4.31 -683.24 -2.94 -13.99 16
19 C 0.07 1.52 5.37 86.47 0.46 1.98 16
20 C -0.06 -1.04 6.68 72.06 0.48 -0.56 16
21 S -0.28 -5.14 21.78 -56.49 -1.23 -6.37 16
22 C -0.03 -0.42 2.87 30.68 0.09 -0.33 16
23 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16
24 C -0.13 -1.54 8.84 71.98 0.64 -0.91 16
25 C 0.10 2.11 1.98 45.08 0.09 2.20 16
26 H 0.05 1.32 7.91 -2.38 -0.02 1.30 16
27 C -0.14 -2.85 8.26 71.98 0.59 -2.25 16
28 H 0.07 1.13 6.72 -2.39 -0.02 1.12 16
29 H 0.05 1.11 7.87 -2.39 -0.02 1.10 16
30 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16
31 H 0.09 2.38 8.07 -2.39 -0.02 2.36 16
32 H 0.11 2.28 8.11 -2.39 -0.02 2.26 16
33 H 0.10 3.33 7.71 -2.39 -0.02 3.31 16
34 H 0.09 3.52 8.14 -2.39 -0.02 3.51 16
35 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16
36 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16
37 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16
38 H 0.08 1.95 7.93 -2.39 -0.02 1.93 16
39 H 0.05 1.37 7.91 -2.38 -0.02 1.35 16
40 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16
41 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16
42 H 0.09 0.81 6.50 -2.39 -0.02 0.79 16
43 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16
44 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16
45 H 0.07 1.29 6.72 -2.39 -0.02 1.27 16
46 H 0.09 1.42 6.65 -2.39 -0.02 1.40 16
47 H 0.03 0.85 6.30 -2.39 -0.02 0.83 16
Total: -1.00 -70.51 382.12 3.15 -67.36
By element:
Atomic # 1 Polarization: 12.59 SS G_CDS: 0.94 Total: 13.53 kcal
Atomic # 6 Polarization: -10.83 SS G_CDS: 6.80 Total: -4.03 kcal
Atomic # 7 Polarization: -109.96 SS G_CDS: -5.39 Total: -115.35 kcal
Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal
Atomic # 16 Polarization: -5.14 SS G_CDS: -1.23 Total: -6.37 kcal
Total: -70.51 3.15 -67.36 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001339654443.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 125.195 kcal
(2) G-P(sol) polarization free energy of solvation -70.510 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.685 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.360 kcal
(6) G-S(sol) free energy of system = (1) + (5) 57.835 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds