Wall clock time and date at job start Tue Mar 31 2020 14:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47576 * 2 1 4 4 N 1.46508 * 109.46861 * 119.99620 * 2 1 3 5 5 C 1.46497 * 119.99896 * 53.60600 * 4 2 1 6 6 C 1.34775 * 120.00037 * 233.59874 * 4 2 1 7 7 O 1.21348 * 120.00061 * 4.86202 * 6 4 2 8 8 C 1.49453 * 120.00121 * 184.85430 * 6 4 2 9 9 O 1.21348 * 119.99587 * 354.84500 * 8 6 4 10 10 N 1.34769 * 120.00191 * 174.84245 * 8 6 4 11 11 C 1.47430 * 125.64897 * 0.02562 * 10 8 6 12 12 C 1.54913 * 104.93044 * 155.79443 * 11 10 8 13 13 C 1.55441 * 101.44924 * 37.00466 * 12 11 10 14 14 O 1.42904 * 110.70562 * 82.88765 * 13 12 11 15 15 C 1.50697 * 110.86160 * 206.07371 * 13 12 11 16 16 H 1.07995 * 120.00229 * 112.73084 * 15 13 12 17 17 C 1.37884 * 119.99901 * 292.72683 * 15 13 12 18 18 N 1.31509 * 120.00109 * 188.23533 * 17 15 13 19 19 Si 1.86802 * 119.99910 * 8.23891 * 17 15 13 20 20 H 1.48500 * 109.47284 * 94.68543 * 19 17 15 21 21 H 1.48497 * 109.46966 * 214.69024 * 19 17 15 22 22 H 1.48499 * 109.46784 * 334.68459 * 19 17 15 23 23 C 1.47018 * 125.65038 * 180.02562 * 10 8 6 24 24 C 1.52993 * 109.47419 * 239.99649 * 2 1 3 25 25 C 1.53004 * 115.55120 * 279.00516 * 24 2 1 26 26 C 1.52998 * 117.49979 * 133.29931 * 24 2 1 27 27 C 1.53002 * 117.49718 * 64.67637 * 24 2 1 28 28 H 1.09000 * 109.46849 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47357 * 300.00309 * 1 2 3 30 30 H 1.09000 * 109.46775 * 60.00559 * 1 2 3 31 31 H 1.08994 * 109.47322 * 238.98331 * 5 4 2 32 32 H 1.08999 * 109.47341 * 358.98765 * 5 4 2 33 33 H 1.09001 * 109.47485 * 118.98551 * 5 4 2 34 34 H 1.08996 * 110.36808 * 274.69399 * 11 10 8 35 35 H 1.09003 * 110.36508 * 36.90324 * 11 10 8 36 36 H 1.08992 * 111.00212 * 155.13769 * 12 11 10 37 37 H 1.09000 * 111.00131 * 278.99335 * 12 11 10 38 38 H 0.96704 * 114.00050 * 184.99992 * 14 13 12 39 39 H 0.96997 * 120.00264 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.88197 * 300.49435 * 23 10 8 41 41 H 1.08996 * 109.88544 * 61.50778 * 23 10 8 42 42 H 1.08997 * 109.46720 * 61.40192 * 25 24 2 43 43 H 1.09003 * 109.47114 * 181.39086 * 25 24 2 44 44 H 1.08992 * 109.47074 * 301.39664 * 25 24 2 45 45 H 1.08999 * 117.50159 * 359.97438 * 26 24 2 46 46 H 1.09003 * 117.50462 * 145.02633 * 26 24 2 47 47 H 1.09000 * 117.49509 * 214.98191 * 27 24 2 48 48 H 1.08990 * 117.50194 * 359.97438 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.5527 -2.0457 1.5011 6 6 2.8959 -0.0792 2.0163 7 8 3.2141 1.0741 1.8131 8 6 3.4771 -0.8215 3.1759 9 8 3.0897 -1.9420 3.4348 10 7 4.4315 -0.2465 3.9341 11 6 4.9915 1.1025 3.7336 12 6 5.5283 1.5226 5.1247 13 6 6.0841 0.1738 5.6612 14 8 7.3995 -0.0669 5.1573 15 6 6.0804 0.1531 7.1680 16 1 5.4211 -0.5188 7.6973 17 6 6.9189 0.9922 7.8710 18 7 7.0358 0.8637 9.1746 19 14 7.8888 2.3113 6.9717 20 1 7.1397 3.5928 7.0154 21 1 9.2098 2.4874 7.6267 22 1 8.0878 1.9022 5.5582 23 6 5.0867 -0.8606 5.0982 24 6 2.0400 -0.7213 -1.2491 25 6 2.0563 -2.2491 -1.1685 26 6 3.1530 -0.0439 -2.0511 27 6 1.7283 -0.0887 -2.6069 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.0698 -2.0528 2.4782 32 1 0.8395 -2.3645 0.7410 33 1 2.4024 -2.7283 1.5109 34 1 5.8033 1.0720 3.0070 35 1 4.2135 1.7909 3.4035 36 1 6.3214 2.2642 5.0297 37 1 4.7228 1.8932 5.7586 38 1 7.7619 -0.9300 5.3998 39 1 7.6254 1.4542 9.6692 40 1 4.3422 -1.1074 5.8552 41 1 5.6170 -1.7623 4.7923 42 1 1.0408 -2.6159 -1.0198 43 1 2.4579 -2.6576 -2.0959 44 1 2.6819 -2.5622 -0.3327 45 1 3.5216 0.9159 -1.6891 46 1 3.8972 -0.6865 -2.5215 47 1 1.5351 -0.7611 -3.4428 48 1 1.1594 0.8410 -2.6103 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349342361.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:17 Heat of formation + Delta-G solvation = -58.985861 kcal Electronic energy + Delta-G solvation = -29232.474208 eV Core-core repulsion = 25289.803228 eV Total energy + Delta-G solvation = -3942.670980 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.92169 -39.43062 -38.14932 -37.51229 -35.62863 -34.42841 -32.41805 -31.06242 -30.35423 -29.25620 -28.47059 -26.85420 -26.18410 -24.48461 -22.82973 -22.53533 -21.86054 -19.82903 -19.35495 -18.90577 -17.60009 -17.13462 -16.90461 -16.38642 -15.81305 -15.51769 -15.05990 -14.74343 -14.70093 -14.54584 -14.16110 -13.80448 -13.36729 -13.27714 -13.11261 -12.95410 -12.81679 -12.70516 -12.56424 -12.43848 -12.20296 -12.15379 -11.85162 -11.79554 -11.64342 -11.32973 -11.21432 -11.07390 -10.75789 -10.66875 -10.60981 -10.30887 -10.01036 -9.96090 -9.07968 -9.02383 -8.87129 -8.75136 -8.47545 -8.24207 -6.23462 -4.34818 1.62222 2.36037 3.31685 3.36259 3.41261 3.43056 3.61456 3.62204 4.26017 4.40781 4.42789 4.48263 4.62557 4.69120 4.93774 5.00301 5.05848 5.10014 5.21449 5.28385 5.36794 5.38474 5.40879 5.53736 5.58802 5.63801 5.66333 5.69588 5.71542 5.77946 5.81243 5.86046 5.93838 5.99845 6.00424 6.15146 6.32516 6.41824 6.50574 6.63831 6.69184 7.00172 7.11137 7.43424 7.64429 7.81699 8.16008 8.23136 8.70633 8.87273 9.40183 10.86639 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.025515 B = 0.003117 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.109819 B = 8982.014016 C = 9354.796310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.103 0.897 4 N -0.583 5.583 5 C 0.083 3.917 6 C 0.512 3.488 7 O -0.517 6.517 8 C 0.511 3.489 9 O -0.532 6.532 10 N -0.575 5.575 11 C 0.096 3.904 12 C -0.130 4.130 13 C 0.218 3.782 14 O -0.570 6.570 15 C -0.553 4.553 16 H 0.079 0.921 17 C 0.090 3.910 18 N -0.885 5.885 19 Si 0.871 3.129 20 H -0.286 1.286 21 H -0.297 1.297 22 H -0.221 1.221 23 C 0.093 3.907 24 C -0.141 4.141 25 C -0.121 4.121 26 C -0.171 4.171 27 C -0.166 4.166 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.364 0.636 39 H 0.267 0.733 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.409 -3.239 -21.583 24.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.068 3.932 3 H 0.121 0.879 4 N -0.317 5.317 5 C -0.059 4.059 6 C 0.296 3.704 7 O -0.393 6.393 8 C 0.294 3.706 9 O -0.410 6.410 10 N -0.307 5.307 11 C -0.026 4.026 12 C -0.168 4.168 13 C 0.178 3.822 14 O -0.376 6.376 15 C -0.590 4.590 16 H 0.097 0.903 17 C -0.115 4.115 18 N -0.521 5.521 19 Si 0.699 3.301 20 H -0.213 1.213 21 H -0.224 1.224 22 H -0.144 1.144 23 C -0.028 4.028 24 C -0.142 4.142 25 C -0.178 4.178 26 C -0.208 4.208 27 C -0.204 4.204 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.211 0.789 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.115 0.885 46 H 0.112 0.888 47 H 0.114 0.886 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.503 -2.603 -21.669 24.671 hybrid contribution 0.593 0.109 0.030 0.604 sum -10.910 -2.494 -21.639 24.362 Atomic orbital electron populations 1.22103 0.94029 1.02749 1.02640 1.20646 0.94161 0.96840 0.81522 0.87864 1.47653 1.43201 1.17320 1.23515 1.22216 1.00480 0.81862 1.01328 1.20318 0.79743 0.86721 0.83662 1.90683 1.59790 1.16682 1.72153 1.19554 0.80921 0.86293 0.83855 1.90717 1.60561 1.18728 1.71030 1.48437 1.35578 1.17963 1.28759 1.22726 0.98633 0.82618 0.98610 1.23279 1.00812 0.98509 0.94163 1.20024 0.79441 0.89584 0.93201 1.86545 1.32541 1.39697 1.78847 1.21170 1.25207 1.24746 0.87882 0.90342 1.24930 0.95175 0.96902 0.94535 1.69947 1.37198 1.37752 1.07196 0.87101 0.78895 0.80914 0.83229 1.21315 1.22413 1.14368 1.22994 0.96761 0.97308 0.85755 1.21819 1.04474 0.95673 0.92210 1.21627 1.01929 0.91807 1.02410 1.23117 0.91758 1.02562 1.03337 1.23005 0.99091 1.02566 0.95716 0.91877 0.91915 0.91103 0.91269 0.90774 0.90814 0.91363 0.88904 0.90242 0.89478 0.78860 0.92343 0.90291 0.91808 0.91889 0.92670 0.91150 0.88497 0.88803 0.88647 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 8.97 37.16 0.33 -0.91 16 2 C 0.17 1.74 2.75 -67.93 -0.19 1.56 16 3 H 0.10 1.22 6.71 -51.93 -0.35 0.87 16 4 N -0.58 -7.23 2.62 -174.44 -0.46 -7.68 16 5 C 0.08 0.90 6.51 59.85 0.39 1.29 16 6 C 0.51 8.10 7.69 -11.58 -0.09 8.01 16 7 O -0.52 -8.89 13.10 5.50 0.07 -8.82 16 8 C 0.51 9.15 7.84 -11.59 -0.09 9.05 16 9 O -0.53 -9.87 13.58 5.50 0.07 -9.80 16 10 N -0.58 -10.94 3.33 -171.02 -0.57 -11.51 16 11 C 0.10 1.78 6.13 -2.52 -0.02 1.77 16 12 C -0.13 -2.69 5.01 -24.43 -0.12 -2.81 16 13 C 0.22 4.82 0.67 -89.78 -0.06 4.76 16 14 O -0.57 -12.23 10.16 -35.23 -0.36 -12.59 16 15 C -0.55 -14.57 8.82 -34.44 -0.30 -14.87 16 16 H 0.08 2.25 7.77 -52.49 -0.41 1.84 16 17 C 0.09 2.48 5.46 -17.82 -0.10 2.39 16 18 N -0.89 -26.05 13.96 55.43 0.77 -25.27 16 19 Si 0.87 20.98 24.55 -169.99 -4.17 16.80 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.22 -5.13 4.78 56.52 0.27 -4.86 16 23 C 0.09 1.90 6.21 -3.06 -0.02 1.88 16 24 C -0.14 -1.23 1.92 -154.51 -0.30 -1.53 16 25 C -0.12 -0.97 7.95 37.16 0.30 -0.67 16 26 C -0.17 -1.52 9.88 -26.73 -0.26 -1.79 16 27 C -0.17 -1.19 9.52 -26.73 -0.25 -1.45 16 28 H 0.06 0.44 6.51 -51.93 -0.34 0.11 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.46 7.61 -51.93 -0.40 0.06 16 31 H 0.07 0.83 7.33 -51.93 -0.38 0.45 16 32 H 0.07 0.59 4.22 -51.93 -0.22 0.37 16 33 H 0.07 0.87 6.26 -51.93 -0.32 0.55 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.66 6.02 -51.93 -0.31 1.35 16 36 H 0.08 1.66 4.98 -51.93 -0.26 1.40 16 37 H 0.09 1.81 8.05 -51.93 -0.42 1.39 16 38 H 0.36 6.79 9.08 45.56 0.41 7.20 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.08 1.68 7.63 -51.93 -0.40 1.29 16 41 H 0.06 1.24 8.06 -51.93 -0.42 0.82 16 42 H 0.06 0.42 6.65 -51.93 -0.35 0.08 16 43 H 0.05 0.40 8.11 -51.93 -0.42 -0.02 16 44 H 0.07 0.66 5.62 -51.93 -0.29 0.37 16 45 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 46 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.09 0.62 7.91 -51.93 -0.41 0.21 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -30.89 363.10 -6.60 -37.49 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -6.65 Total: 9.23 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -0.78 Total: 6.68 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.25 Total: -44.47 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.21 Total: -31.21 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.17 Total: 16.80 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.89 -6.60 -37.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349342361.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.500 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds