Wall clock time and date at job start Tue Mar 31 2020 14:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47576 * 2 1 4 4 N 1.46508 * 109.46861 * 119.99620 * 2 1 3 5 5 C 1.46497 * 119.99896 * 53.60600 * 4 2 1 6 6 C 1.34775 * 120.00037 * 233.59874 * 4 2 1 7 7 O 1.21348 * 120.00061 * 4.86202 * 6 4 2 8 8 C 1.49453 * 120.00121 * 184.85430 * 6 4 2 9 9 O 1.21348 * 119.99587 * 354.84500 * 8 6 4 10 10 N 1.34769 * 120.00191 * 174.84245 * 8 6 4 11 11 C 1.47430 * 125.64897 * 0.02562 * 10 8 6 12 12 C 1.54913 * 104.93044 * 155.79443 * 11 10 8 13 13 C 1.55441 * 101.44924 * 37.00466 * 12 11 10 14 14 O 1.42904 * 110.70562 * 82.88765 * 13 12 11 15 15 C 1.50697 * 110.86160 * 206.07371 * 13 12 11 16 16 H 1.07995 * 120.00229 * 112.73084 * 15 13 12 17 17 C 1.37884 * 119.99901 * 292.72683 * 15 13 12 18 18 N 1.31509 * 120.00109 * 188.23533 * 17 15 13 19 19 Si 1.86802 * 119.99910 * 8.23891 * 17 15 13 20 20 H 1.48500 * 109.47284 * 94.68543 * 19 17 15 21 21 H 1.48497 * 109.46966 * 214.69024 * 19 17 15 22 22 H 1.48499 * 109.46784 * 334.68459 * 19 17 15 23 23 C 1.47018 * 125.65038 * 180.02562 * 10 8 6 24 24 C 1.52993 * 109.47419 * 239.99649 * 2 1 3 25 25 C 1.53004 * 115.55120 * 279.00516 * 24 2 1 26 26 C 1.52998 * 117.49979 * 133.29931 * 24 2 1 27 27 C 1.53002 * 117.49718 * 64.67637 * 24 2 1 28 28 H 1.09000 * 109.46849 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47357 * 300.00309 * 1 2 3 30 30 H 1.09000 * 109.46775 * 60.00559 * 1 2 3 31 31 H 1.08994 * 109.47322 * 238.98331 * 5 4 2 32 32 H 1.08999 * 109.47341 * 358.98765 * 5 4 2 33 33 H 1.09001 * 109.47485 * 118.98551 * 5 4 2 34 34 H 1.08996 * 110.36808 * 274.69399 * 11 10 8 35 35 H 1.09003 * 110.36508 * 36.90324 * 11 10 8 36 36 H 1.08992 * 111.00212 * 155.13769 * 12 11 10 37 37 H 1.09000 * 111.00131 * 278.99335 * 12 11 10 38 38 H 0.96704 * 114.00050 * 184.99992 * 14 13 12 39 39 H 0.96997 * 120.00264 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.88197 * 300.49435 * 23 10 8 41 41 H 1.08996 * 109.88544 * 61.50778 * 23 10 8 42 42 H 1.08997 * 109.46720 * 61.40192 * 25 24 2 43 43 H 1.09003 * 109.47114 * 181.39086 * 25 24 2 44 44 H 1.08992 * 109.47074 * 301.39664 * 25 24 2 45 45 H 1.08999 * 117.50159 * 359.97438 * 26 24 2 46 46 H 1.09003 * 117.50462 * 145.02633 * 26 24 2 47 47 H 1.09000 * 117.49509 * 214.98191 * 27 24 2 48 48 H 1.08990 * 117.50194 * 359.97438 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.5527 -2.0457 1.5011 6 6 2.8959 -0.0792 2.0163 7 8 3.2141 1.0741 1.8131 8 6 3.4771 -0.8215 3.1759 9 8 3.0897 -1.9420 3.4348 10 7 4.4315 -0.2465 3.9341 11 6 4.9915 1.1025 3.7336 12 6 5.5283 1.5226 5.1247 13 6 6.0841 0.1738 5.6612 14 8 7.3995 -0.0669 5.1573 15 6 6.0804 0.1531 7.1680 16 1 5.4211 -0.5188 7.6973 17 6 6.9189 0.9922 7.8710 18 7 7.0358 0.8637 9.1746 19 14 7.8888 2.3113 6.9717 20 1 7.1397 3.5928 7.0154 21 1 9.2098 2.4874 7.6267 22 1 8.0878 1.9022 5.5582 23 6 5.0867 -0.8606 5.0982 24 6 2.0400 -0.7213 -1.2491 25 6 2.0563 -2.2491 -1.1685 26 6 3.1530 -0.0439 -2.0511 27 6 1.7283 -0.0887 -2.6069 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.0698 -2.0528 2.4782 32 1 0.8395 -2.3645 0.7410 33 1 2.4024 -2.7283 1.5109 34 1 5.8033 1.0720 3.0070 35 1 4.2135 1.7909 3.4035 36 1 6.3214 2.2642 5.0297 37 1 4.7228 1.8932 5.7586 38 1 7.7619 -0.9300 5.3998 39 1 7.6254 1.4542 9.6692 40 1 4.3422 -1.1074 5.8552 41 1 5.6170 -1.7623 4.7923 42 1 1.0408 -2.6159 -1.0198 43 1 2.4579 -2.6576 -2.0959 44 1 2.6819 -2.5622 -0.3327 45 1 3.5216 0.9159 -1.6891 46 1 3.8972 -0.6865 -2.5215 47 1 1.5351 -0.7611 -3.4428 48 1 1.1594 0.8410 -2.6103 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349342361.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:16 Heat of formation + Delta-G solvation = -80.911928 kcal Electronic energy + Delta-G solvation = -29233.424993 eV Core-core repulsion = 25289.803228 eV Total energy + Delta-G solvation = -3943.621766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.13929 -40.64893 -39.35327 -38.91882 -36.77733 -35.89273 -34.49988 -32.02178 -31.85518 -30.14018 -29.96305 -27.94955 -27.61082 -25.81606 -24.17352 -23.21141 -23.06357 -21.53905 -20.67729 -19.72354 -19.47232 -18.38306 -18.21436 -17.50080 -17.17651 -16.80631 -16.60025 -16.51495 -15.93519 -15.33714 -15.17578 -15.12176 -14.86618 -14.71982 -14.47766 -14.17532 -14.07657 -14.07239 -13.50876 -13.47713 -13.31965 -13.27705 -13.11339 -12.92358 -12.83716 -12.56432 -12.48372 -12.27623 -12.24106 -12.21470 -11.78389 -11.71168 -11.31254 -10.99256 -10.77186 -10.60430 -10.39927 -10.32589 -9.97219 -9.67416 -8.37507 -6.51691 0.29815 1.14910 1.39798 1.46699 1.69399 2.05268 2.26743 2.40752 2.82533 2.97855 3.08873 3.53056 3.59014 3.75706 3.81613 3.98021 3.99284 4.00914 4.17725 4.24014 4.28798 4.34878 4.40334 4.59900 4.62634 4.68606 4.75399 4.79723 4.85044 4.86214 4.88873 4.95467 4.98648 5.01075 5.05492 5.07964 5.08064 5.22406 5.26898 5.35031 5.37240 5.45667 5.49273 5.91446 6.05007 6.21104 6.51737 6.58344 6.87027 7.10856 7.29860 8.76398 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.025515 B = 0.003117 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.109819 B = 8982.014016 C = 9354.796310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.167 3.833 3 H 0.085 0.915 4 N -0.570 5.570 5 C 0.083 3.917 6 C 0.510 3.490 7 O -0.536 6.536 8 C 0.508 3.492 9 O -0.541 6.541 10 N -0.583 5.583 11 C 0.110 3.890 12 C -0.131 4.131 13 C 0.220 3.780 14 O -0.570 6.570 15 C -0.550 4.550 16 H 0.041 0.959 17 C 0.040 3.960 18 N -0.933 5.933 19 Si 0.931 3.069 20 H -0.280 1.280 21 H -0.304 1.304 22 H -0.204 1.204 23 C 0.102 3.898 24 C -0.148 4.148 25 C -0.120 4.120 26 C -0.188 4.188 27 C -0.142 4.142 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.377 0.623 39 H 0.268 0.732 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.112 0.888 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.483 -3.170 -24.945 28.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.065 3.935 3 H 0.104 0.896 4 N -0.302 5.302 5 C -0.058 4.058 6 C 0.293 3.707 7 O -0.414 6.414 8 C 0.292 3.708 9 O -0.420 6.420 10 N -0.316 5.316 11 C -0.012 4.012 12 C -0.169 4.169 13 C 0.179 3.821 14 O -0.378 6.378 15 C -0.588 4.588 16 H 0.059 0.941 17 C -0.161 4.161 18 N -0.572 5.572 19 Si 0.756 3.244 20 H -0.206 1.206 21 H -0.231 1.231 22 H -0.126 1.126 23 C -0.020 4.020 24 C -0.149 4.149 25 C -0.177 4.177 26 C -0.225 4.225 27 C -0.180 4.180 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.226 0.774 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.100 0.900 46 H 0.114 0.886 47 H 0.130 0.870 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.612 -2.567 -25.075 28.185 hybrid contribution 0.844 -0.039 1.065 1.360 sum -11.768 -2.605 -24.009 26.865 Atomic orbital electron populations 1.22087 0.91869 1.03814 1.03189 1.20862 0.95745 0.95880 0.81030 0.89645 1.47784 1.41486 1.17696 1.23269 1.22295 1.00726 0.80798 1.01973 1.19941 0.80652 0.86502 0.83616 1.90669 1.60905 1.17176 1.72615 1.20052 0.80317 0.86301 0.84165 1.90709 1.60613 1.19250 1.71394 1.48447 1.36266 1.18176 1.28687 1.22619 0.98984 0.82428 0.97145 1.23233 1.00757 0.97559 0.95368 1.19827 0.80303 0.91288 0.90694 1.86487 1.31975 1.40880 1.78429 1.21383 1.23758 1.23314 0.90355 0.94089 1.25709 0.96404 0.98959 0.95003 1.70067 1.38864 1.39283 1.08951 0.86184 0.77020 0.78439 0.82712 1.20629 1.23149 1.12572 1.22688 0.96062 0.97173 0.86092 1.21804 1.04779 0.96077 0.92227 1.21621 1.02659 0.91109 1.02261 1.23131 0.92879 1.02075 1.04448 1.23088 0.97210 1.02845 0.94835 0.90499 0.92861 0.89115 0.92384 0.87360 0.91743 0.90694 0.88004 0.89895 0.90078 0.77424 0.92270 0.92092 0.90944 0.90213 0.91743 0.92825 0.90009 0.88615 0.86977 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.97 71.98 0.65 -1.30 16 2 C 0.17 3.05 2.75 44.99 0.12 3.18 16 3 H 0.09 1.91 6.71 -2.39 -0.02 1.90 16 4 N -0.57 -13.30 2.62 -824.18 -2.16 -15.46 16 5 C 0.08 1.66 6.51 127.77 0.83 2.49 16 6 C 0.51 15.71 7.69 87.27 0.67 16.38 16 7 O -0.54 -17.96 13.10 -3.24 -0.04 -18.00 16 8 C 0.51 17.89 7.84 87.27 0.68 18.58 16 9 O -0.54 -19.87 13.58 -3.24 -0.04 -19.91 16 10 N -0.58 -21.82 3.33 -813.35 -2.71 -24.53 16 11 C 0.11 3.93 6.13 86.86 0.53 4.47 16 12 C -0.13 -5.30 5.01 32.09 0.16 -5.13 16 13 C 0.22 9.64 0.67 -10.25 -0.01 9.64 16 14 O -0.57 -23.57 10.16 -148.98 -1.51 -25.09 16 15 C -0.55 -29.65 8.82 25.60 0.23 -29.42 16 16 H 0.04 2.46 7.77 -2.91 -0.02 2.44 16 17 C 0.04 2.23 5.46 84.66 0.46 2.70 16 18 N -0.93 -56.42 13.96 21.45 0.30 -56.12 16 19 Si 0.93 43.26 24.55 68.60 1.68 44.95 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 22 H -0.20 -8.83 4.78 99.48 0.48 -8.36 16 23 C 0.10 4.15 6.21 86.73 0.54 4.69 16 24 C -0.15 -2.21 1.92 -52.18 -0.10 -2.31 16 25 C -0.12 -1.56 7.95 71.98 0.57 -0.99 16 26 C -0.19 -3.04 9.88 30.59 0.30 -2.74 16 27 C -0.14 -1.58 9.52 30.60 0.29 -1.29 16 28 H 0.08 0.78 6.51 -2.39 -0.02 0.77 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 0.83 7.61 -2.39 -0.02 0.82 16 31 H 0.06 1.31 7.33 -2.39 -0.02 1.29 16 32 H 0.11 1.39 4.22 -2.39 -0.01 1.38 16 33 H 0.06 1.44 6.26 -2.39 -0.01 1.43 16 34 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.10 3.51 6.02 -2.39 -0.01 3.49 16 36 H 0.08 3.29 4.98 -2.39 -0.01 3.28 16 37 H 0.08 3.34 8.05 -2.39 -0.02 3.32 16 38 H 0.38 13.55 9.08 -74.05 -0.67 12.87 16 39 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 40 H 0.06 2.67 7.63 -2.39 -0.02 2.65 16 41 H 0.07 2.78 8.06 -2.39 -0.02 2.76 16 42 H 0.08 0.75 6.65 -2.39 -0.02 0.74 16 43 H 0.06 0.74 8.11 -2.39 -0.02 0.72 16 44 H 0.05 0.89 5.62 -2.39 -0.01 0.88 16 45 H 0.08 1.56 8.08 -2.39 -0.02 1.54 16 46 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.10 0.99 7.91 -2.39 -0.02 0.97 16 Total: -1.00 -67.29 363.10 1.54 -65.76 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.08 Total: 29.49 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 5.93 Total: 18.92 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -4.57 Total: -96.11 kcal Atomic # 8 Polarization: -61.40 SS G_CDS: -1.60 Total: -63.00 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.68 Total: 44.95 kcal Total: -67.29 1.54 -65.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349342361.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.153 kcal (2) G-P(sol) polarization free energy of solvation -67.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds