Wall clock time and date at job start Tue Mar 31 2020 14:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46849 * 2 1 4 4 C 1.50695 * 109.47091 * 120.00232 * 2 1 3 5 5 H 1.07998 * 120.00347 * 120.00029 * 4 2 1 6 6 C 1.37880 * 119.99873 * 299.99705 * 4 2 1 7 7 N 1.31519 * 120.00006 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00004 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47227 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.46944 * 120.00349 * 8 6 4 11 11 H 1.48507 * 109.47072 * 240.00264 * 8 6 4 12 12 N 1.46500 * 109.47127 * 240.00352 * 2 1 3 13 13 C 1.34769 * 120.00497 * 84.99762 * 12 2 1 14 14 O 1.21283 * 119.99694 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00465 * 180.02562 * 13 12 2 16 16 H 1.09003 * 110.45538 * 317.59920 * 15 13 12 17 17 C 1.54386 * 110.40955 * 79.99996 * 15 13 12 18 18 H 1.09004 * 117.61852 * 236.02456 * 17 15 13 19 19 C 1.53006 * 118.12090 * 31.59408 * 17 15 13 20 20 C 1.53001 * 60.55379 * 93.13775 * 19 17 15 21 21 H 1.09001 * 119.53831 * 111.76501 * 20 19 17 22 22 C 1.54383 * 118.12671 * 268.45552 * 20 19 17 23 23 N 1.48152 * 104.61662 * 87.19241 * 22 20 19 24 24 C 1.34777 * 127.83786 * 140.41640 * 23 22 20 25 25 O 1.21510 * 119.99887 * 179.97438 * 24 23 22 26 26 O 1.34632 * 120.00231 * 359.97438 * 24 23 22 27 27 C 1.45200 * 117.00439 * 180.02562 * 26 24 23 28 28 C 1.52999 * 109.46789 * 59.99682 * 27 26 24 29 29 C 1.53001 * 109.47436 * 180.02562 * 27 26 24 30 30 C 1.53005 * 109.46672 * 299.99951 * 27 26 24 31 31 H 1.08993 * 109.47397 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47287 * 300.00397 * 1 2 3 33 33 H 1.09005 * 109.47026 * 59.99790 * 1 2 3 34 34 H 0.97001 * 120.00001 * 179.97438 * 7 6 4 35 35 H 0.97009 * 119.99528 * 265.00038 * 12 2 1 36 36 H 1.08995 * 117.44260 * 200.78524 * 19 17 15 37 37 H 1.08997 * 117.44110 * 345.49510 * 19 17 15 38 38 H 1.09001 * 110.41296 * 205.97746 * 22 20 19 39 39 H 1.08994 * 110.40951 * 328.29236 * 22 20 19 40 40 H 1.08997 * 109.47111 * 60.00952 * 28 27 26 41 41 H 1.09008 * 109.46910 * 180.02562 * 28 27 26 42 42 H 1.08999 * 109.47421 * 300.00045 * 28 27 26 43 43 H 1.09002 * 109.46859 * 59.99806 * 29 27 26 44 44 H 1.08996 * 109.47160 * 179.97438 * 29 27 26 45 45 H 1.08994 * 109.47096 * 300.00328 * 29 27 26 46 46 H 1.09001 * 109.46864 * 60.00109 * 30 27 26 47 47 H 1.09004 * 109.46944 * 179.97438 * 30 27 26 48 48 H 1.08995 * 109.47343 * 299.99350 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.1453 -2.2878 3.6038 10 1 3.1465 -0.1875 4.8164 11 1 1.1659 -1.5867 4.8160 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6488 -0.7287 -3.5878 16 1 3.4844 -1.3820 -3.3364 17 6 1.5102 -1.5393 -4.2434 18 1 1.6727 -2.6063 -4.3964 19 6 0.0820 -1.0034 -4.1239 20 6 0.9220 -0.6392 -5.3498 21 1 0.6464 -1.0355 -6.3270 22 6 1.7613 0.6556 -5.2983 23 7 3.0451 0.2448 -4.6834 24 6 4.2874 0.6479 -5.0159 25 8 5.2486 0.2160 -4.4108 26 8 4.4636 1.5291 -6.0184 27 6 5.8292 1.9180 -6.3220 28 6 6.6364 0.6796 -6.7165 29 6 5.8293 2.9179 -7.4801 30 6 6.4607 2.5669 -5.0886 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 0.7081 1.1609 3.4844 35 1 2.2490 -1.6318 -1.1526 36 1 -0.7339 -1.7118 -4.2665 37 1 -0.1004 -0.2193 -3.3891 38 1 1.9279 1.0409 -6.3043 39 1 1.2656 1.4057 -4.6822 40 1 6.1865 0.2175 -7.5952 41 1 7.6617 0.9716 -6.9439 42 1 6.6363 -0.0323 -5.8911 43 1 5.2543 3.8000 -7.1985 44 1 6.8544 3.2102 -7.7076 45 1 5.3792 2.4561 -8.3588 46 1 6.4606 1.8549 -4.2633 47 1 7.4860 2.8585 -5.3163 48 1 5.8856 3.4491 -4.8075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361828333.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:26 Heat of formation + Delta-G solvation = -96.996982 kcal Electronic energy + Delta-G solvation = -29134.069195 eV Core-core repulsion = 25189.749929 eV Total energy + Delta-G solvation = -3944.319266 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.20620 -41.23984 -39.31784 -37.88613 -36.69604 -35.38127 -34.38833 -34.17941 -31.57018 -29.55271 -28.39656 -28.30226 -27.60927 -27.34916 -24.01360 -23.28751 -22.16933 -21.69297 -20.82960 -20.46025 -19.12492 -18.82188 -17.74126 -17.68234 -17.21288 -17.07790 -16.86404 -16.18141 -16.01044 -15.51222 -15.38645 -15.00197 -14.89861 -14.50726 -14.41528 -13.87028 -13.66437 -13.50223 -13.36331 -13.15989 -13.01418 -12.97461 -12.90730 -12.88223 -12.79806 -12.70595 -12.59195 -12.50247 -12.30436 -12.26764 -12.13972 -11.56732 -11.43371 -11.34615 -11.11437 -10.98995 -10.83661 -10.63002 -9.85267 -9.79748 -8.19467 -6.36907 0.76255 1.42765 1.44165 1.56069 1.62316 1.69406 2.28462 2.41993 2.61382 2.82944 3.10959 3.37155 3.57443 3.72819 3.75533 3.77961 3.89517 3.92477 4.07848 4.17882 4.27835 4.47435 4.59131 4.60368 4.66183 4.73821 4.74717 4.80492 4.81176 4.84015 4.86161 4.90500 4.96091 5.06989 5.09347 5.11168 5.24379 5.25765 5.32364 5.41016 5.41955 5.57810 5.67109 5.88505 6.08763 6.33996 6.70383 6.87359 7.14488 7.29095 7.46538 8.86867 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.003401 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.181815 B = 8230.683125 C = 9289.840055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.274 3.726 3 H -0.009 1.009 4 C -0.548 4.548 5 H 0.072 0.928 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.972 3.028 9 H -0.260 1.260 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.695 5.695 13 C 0.501 3.499 14 O -0.588 6.588 15 C 0.160 3.840 16 H 0.122 0.878 17 C -0.163 4.163 18 H 0.169 0.831 19 C -0.141 4.141 20 C -0.146 4.146 21 H 0.165 0.835 22 C 0.124 3.876 23 N -0.596 5.596 24 C 0.670 3.330 25 O -0.594 6.594 26 O -0.363 6.363 27 C 0.121 3.879 28 C -0.176 4.176 29 C -0.132 4.132 30 C -0.183 4.183 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.014 0.986 34 H 0.265 0.735 35 H 0.406 0.594 36 H 0.142 0.858 37 H 0.064 0.936 38 H 0.107 0.893 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.106 0.894 45 H 0.076 0.924 46 H 0.052 0.948 47 H 0.098 0.902 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.287 -4.410 -22.483 23.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.171 3.829 3 H 0.009 0.991 4 C -0.586 4.586 5 H 0.091 0.909 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.796 3.204 9 H -0.184 1.184 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.344 5.344 13 C 0.286 3.714 14 O -0.469 6.469 15 C 0.055 3.945 16 H 0.140 0.860 17 C -0.183 4.183 18 H 0.186 0.814 19 C -0.178 4.178 20 C -0.165 4.165 21 H 0.183 0.817 22 C 0.002 3.998 23 N -0.336 5.336 24 C 0.427 3.573 25 O -0.485 6.485 26 O -0.278 6.278 27 C 0.085 3.915 28 C -0.233 4.233 29 C -0.189 4.189 30 C -0.240 4.240 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.241 0.759 36 H 0.160 0.840 37 H 0.083 0.917 38 H 0.125 0.875 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.112 0.888 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.124 0.876 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.116 0.884 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.496 -3.483 -22.284 22.999 hybrid contribution 0.433 -0.115 1.560 1.623 sum 4.929 -3.598 -20.725 21.605 Atomic orbital electron populations 1.21837 0.97574 0.99713 0.99548 1.18339 0.91545 0.91448 0.81551 0.99075 1.21580 1.32582 1.13573 0.90839 0.90941 1.25791 0.94854 0.95579 1.02294 1.70061 1.36978 1.23915 1.24558 0.85299 0.78164 0.78500 0.78394 1.18410 1.21169 1.20084 1.46171 1.64804 1.14226 1.09157 1.21026 0.77878 0.87143 0.85362 1.90635 1.52706 1.17873 1.85694 1.21896 0.99246 0.88672 0.84693 0.85984 1.23506 0.91680 0.99955 1.03118 0.81363 1.23213 0.93395 1.02749 0.98439 1.23795 1.01715 0.94652 0.96341 0.81722 1.22015 0.81956 0.96446 0.99334 1.48638 1.03769 1.46712 1.34507 1.17552 0.82392 0.78150 0.79256 1.90884 1.39382 1.61324 1.56956 1.86310 1.34953 1.57011 1.49506 1.22519 0.76459 0.96119 0.96365 1.22448 1.01294 0.97264 1.02293 1.21872 1.04728 0.97107 0.95197 1.22502 1.02557 1.00711 0.98260 0.93619 0.91701 0.96686 0.92537 0.75919 0.84035 0.91715 0.87520 0.92272 0.91210 0.88750 0.92326 0.91761 0.87551 0.90477 0.92849 0.88374 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.39 9.26 71.98 0.67 -5.72 16 2 C 0.27 14.41 2.56 44.24 0.11 14.52 16 3 H -0.01 -0.55 7.58 -2.39 -0.02 -0.56 16 4 C -0.55 -29.42 8.73 25.60 0.22 -29.19 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.81 5.30 84.65 0.45 1.26 16 7 N -0.92 -53.06 11.32 21.45 0.24 -52.82 16 8 Si 0.97 42.55 29.54 68.60 2.03 44.58 16 9 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 10 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 12 N -0.69 -29.39 5.07 -446.11 -2.26 -31.66 16 13 C 0.50 20.69 5.57 87.66 0.49 21.18 16 14 O -0.59 -29.48 14.66 -3.04 -0.04 -29.52 16 15 C 0.16 5.02 3.51 43.66 0.15 5.17 16 16 H 0.12 3.67 7.95 -2.39 -0.02 3.65 16 17 C -0.16 -3.52 6.82 -9.89 -0.07 -3.59 16 18 H 0.17 2.44 8.14 -2.38 -0.02 2.42 16 19 C -0.14 -3.10 9.59 30.60 0.29 -2.81 16 20 C -0.15 -2.84 7.13 -9.89 -0.07 -2.91 16 21 H 0.17 1.97 8.14 -2.39 -0.02 1.95 16 22 C 0.12 3.31 6.45 86.53 0.56 3.87 16 23 N -0.60 -19.21 2.93 -909.24 -2.67 -21.88 16 24 C 0.67 23.18 8.02 129.79 1.04 24.22 16 25 O -0.59 -23.11 12.21 19.81 0.24 -22.87 16 26 O -0.36 -10.71 9.41 -55.41 -0.52 -11.24 16 27 C 0.12 2.81 1.13 -10.79 -0.01 2.80 16 28 C -0.18 -3.66 8.37 71.98 0.60 -3.06 16 29 C -0.13 -1.99 8.85 71.98 0.64 -1.35 16 30 C -0.18 -4.70 8.37 71.98 0.60 -4.09 16 31 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.06 3.58 6.07 -2.39 -0.01 3.57 16 33 H 0.01 0.69 8.14 -2.38 -0.02 0.68 16 34 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 35 H 0.41 14.47 8.54 -92.70 -0.79 13.68 16 36 H 0.14 2.19 8.14 -2.39 -0.02 2.18 16 37 H 0.06 2.02 6.92 -2.39 -0.02 2.00 16 38 H 0.11 2.35 7.87 -2.39 -0.02 2.33 16 39 H 0.06 1.96 6.96 -2.39 -0.02 1.95 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.06 1.61 5.88 -2.39 -0.01 1.59 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.05 1.77 5.88 -2.39 -0.01 1.76 16 47 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 48 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -75.38 383.54 2.87 -72.52 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: 0.17 Total: 32.60 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: 5.68 Total: 20.29 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -4.69 Total: -106.35 kcal Atomic # 8 Polarization: -63.31 SS G_CDS: -0.32 Total: -63.63 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -75.38 2.87 -72.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361828333.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.482 kcal (2) G-P(sol) polarization free energy of solvation -75.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds