Wall clock time and date at job start Tue Mar 31 2020 15:36:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 N 1.46501 * 109.47352 * 2 1
4 4 C 1.46493 * 120.00324 * 270.00610 * 3 2 1
5 5 C 1.50707 * 109.46725 * 269.99693 * 4 3 2
6 6 H 1.07997 * 120.00416 * 359.97438 * 5 4 3
7 7 C 1.37880 * 119.99595 * 179.97438 * 5 4 3
8 8 N 1.31506 * 120.00352 * 359.97438 * 7 5 4
9 9 Si 1.86807 * 119.99499 * 180.02562 * 7 5 4
10 10 H 1.48492 * 109.47059 * 60.00583 * 9 7 5
11 11 H 1.48503 * 109.46580 * 180.02562 * 9 7 5
12 12 H 1.48491 * 109.47024 * 300.00101 * 9 7 5
13 13 C 1.34777 * 119.99779 * 89.99786 * 3 2 1
14 14 O 1.21288 * 119.99901 * 179.72525 * 13 3 2
15 15 C 1.50704 * 120.00325 * 0.02562 * 13 3 2
16 16 N 1.46898 * 109.47417 * 185.83959 * 15 13 3
17 17 C 1.47901 * 111.00044 * 176.64147 * 16 15 13
18 18 C 1.53995 * 107.05200 * 214.15577 * 17 16 15
19 19 H 1.08998 * 110.31121 * 120.14467 * 18 17 16
20 20 C 1.50707 * 110.30316 * 242.30313 * 18 17 16
21 21 O 1.20827 * 119.99604 * 118.54966 * 20 18 17
22 22 O 1.34227 * 120.00395 * 298.54617 * 20 18 17
23 23 C 1.54596 * 105.14396 * 1.21924 * 18 17 16
24 24 H 1.09000 * 110.72545 * 263.42293 * 23 18 17
25 25 C 1.52997 * 110.72262 * 140.31955 * 23 18 17
26 26 C 1.53003 * 117.50160 * 128.74913 * 25 23 18
27 27 C 1.52998 * 117.49989 * 60.08791 * 25 23 18
28 28 C 1.48533 * 111.00070 * 59.23516 * 16 15 13
29 29 H 1.08996 * 109.47054 * 180.02562 * 1 2 3
30 30 H 1.09009 * 109.46924 * 299.99803 * 1 2 3
31 31 H 1.08997 * 109.47127 * 59.99843 * 1 2 3
32 32 H 1.08996 * 109.47132 * 239.99996 * 2 1 3
33 33 H 1.09001 * 109.47590 * 120.00204 * 2 1 3
34 34 H 1.09000 * 109.47102 * 29.99432 * 4 3 2
35 35 H 1.09000 * 109.47865 * 149.99742 * 4 3 2
36 36 H 0.97006 * 120.00333 * 179.97438 * 8 7 5
37 37 H 1.08999 * 109.46608 * 305.83909 * 15 13 3
38 38 H 1.09002 * 109.47230 * 65.83399 * 15 13 3
39 39 H 1.09001 * 109.91612 * 333.49818 * 17 16 15
40 40 H 1.08991 * 109.92051 * 94.59995 * 17 16 15
41 41 H 0.96691 * 117.00540 * 180.02562 * 22 20 18
42 42 H 1.09000 * 115.54812 * 274.41463 * 25 23 18
43 43 H 1.09001 * 117.49542 * 359.97438 * 26 25 23
44 44 H 1.08996 * 117.50340 * 145.01557 * 26 25 23
45 45 H 1.09005 * 117.49931 * 214.97785 * 27 25 23
46 46 H 1.09002 * 117.50073 * 359.97438 * 27 25 23
47 47 H 1.08991 * 110.66944 * 278.15743 * 28 16 15
48 48 H 1.08999 * 110.66455 * 41.29344 * 28 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2624 2.0719 -1.2686
5 6 3.6858 1.8351 -1.7037
6 1 4.3429 1.2309 -1.0958
7 6 4.1490 2.3898 -2.8779
8 7 3.3488 3.1250 -3.6184
9 14 5.9131 2.0956 -3.4175
10 1 6.1400 0.6389 -3.5950
11 1 6.1605 2.7959 -4.7035
12 1 6.8409 2.6188 -2.3830
13 6 2.2429 2.0165 1.1672
14 8 2.6520 3.1583 1.1673
15 6 1.9923 1.3059 2.4724
16 7 2.1754 2.2470 3.5854
17 6 1.8592 1.6050 4.8798
18 6 1.2378 2.6880 5.7811
19 1 0.2299 2.3994 6.0793
20 6 2.0994 2.9143 6.9967
21 8 2.5936 3.9992 7.1933
22 8 2.3178 1.9108 7.8609
23 6 1.1948 3.9636 4.9088
24 1 2.0592 4.5969 5.1086
25 6 -0.1051 4.7358 5.1426
26 6 0.0074 6.2270 5.4665
27 6 -0.3860 5.2329 6.5621
28 6 1.2455 3.3992 3.4668
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3633 0.5139 0.8901
31 1 -0.3633 0.5138 -0.8899
32 1 1.8933 -0.5138 -0.8899
33 1 1.8934 -0.5139 0.8899
34 1 1.5816 1.6878 -2.0283
35 1 2.0955 3.1411 -1.1383
36 1 3.6748 3.5156 -4.4444
37 1 0.9727 0.9208 2.4863
38 1 2.6945 0.4788 2.5765
39 1 1.1464 0.7945 4.7279
40 1 2.7708 1.2174 5.3345
41 1 2.8767 2.1039 8.6259
42 1 -0.9573 4.4137 4.5442
43 1 1.0076 6.6577 5.5134
44 1 -0.7710 6.8858 5.0816
45 1 -1.4232 5.2382 6.8975
46 1 0.3551 5.0094 7.3295
47 1 1.6413 4.1435 2.7760
48 1 0.2576 3.0651 3.1496
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001589730075.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:36:48
Heat of formation + Delta-G solvation = -91.248131 kcal
Electronic energy + Delta-G solvation = -28591.923542 eV
Core-core repulsion = 24647.853565 eV
Total energy + Delta-G solvation = -3944.069977 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 324.188 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.98538 -39.49008 -38.41996 -36.72257 -36.25291 -35.22203 -32.88000 -32.12876
-30.10273 -29.45404 -27.98628 -26.05300 -23.93990 -23.04937 -22.77491 -22.51788
-21.53573 -21.19737 -19.71576 -18.34300 -18.14660 -17.23076 -16.54541 -16.47160
-16.28662 -15.65959 -15.46846 -15.02032 -14.80834 -14.42818 -14.25089 -13.83046
-13.55170 -13.41316 -13.17165 -13.02387 -12.60197 -12.37344 -12.25816 -11.98321
-11.87562 -11.81076 -11.66134 -11.54535 -11.45228 -11.29648 -11.16789 -10.91437
-10.87820 -10.73515 -10.65092 -10.51132 -10.28730 -10.10949 -10.04189 -9.61728
-8.85741 -8.41016 -8.33709 -7.63356 -6.02066 -4.06568 1.99839 2.76923
3.33886 3.38453 3.39606 3.46053 3.56725 3.63392 4.09162 4.31488
4.44068 4.47701 4.60561 4.78249 4.85533 4.93715 5.04112 5.17783
5.24490 5.29858 5.30264 5.32568 5.33421 5.44740 5.50101 5.52157
5.57613 5.62977 5.70432 5.74800 5.79698 5.93380 5.99949 6.04157
6.19439 6.20811 6.27671 6.34842 6.44682 6.84428 6.86345 7.12745
7.46089 7.57531 7.67548 7.94616 8.26000 8.44261 8.93044 9.13672
9.58615 11.05930
Molecular weight = 324.19amu
Principal moments of inertia in cm(-1)
A = 0.015551 B = 0.002971 C = 0.002936
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1800.115024 B = 9420.658294 C = 9534.838876
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.106 3.894
3 N -0.599 5.599
4 C 0.249 3.751
5 C -0.526 4.526
6 H 0.056 0.944
7 C 0.061 3.939
8 N -0.896 5.896
9 Si 0.897 3.103
10 H -0.277 1.277
11 H -0.287 1.287
12 H -0.276 1.276
13 C 0.506 3.494
14 O -0.523 6.523
15 C 0.028 3.972
16 N -0.497 5.497
17 C 0.047 3.953
18 C -0.087 4.087
19 H 0.115 0.885
20 C 0.490 3.510
21 O -0.506 6.506
22 O -0.517 6.517
23 C -0.050 4.050
24 H 0.105 0.895
25 C -0.147 4.147
26 C -0.169 4.169
27 C -0.183 4.183
28 C 0.045 3.955
29 H 0.059 0.941
30 H 0.048 0.952
31 H 0.061 0.939
32 H 0.083 0.917
33 H 0.063 0.937
34 H 0.031 0.969
35 H 0.042 0.958
36 H 0.263 0.737
37 H 0.059 0.941
38 H 0.100 0.900
39 H 0.059 0.941
40 H 0.086 0.914
41 H 0.409 0.591
42 H 0.107 0.893
43 H 0.098 0.902
44 H 0.094 0.906
45 H 0.091 0.909
46 H 0.094 0.906
47 H 0.113 0.887
48 H 0.044 0.956
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.938 -5.091 20.653 23.478
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C -0.018 4.018
3 N -0.332 5.332
4 C 0.130 3.870
5 C -0.565 4.565
6 H 0.075 0.925
7 C -0.141 4.141
8 N -0.535 5.535
9 Si 0.725 3.275
10 H -0.203 1.203
11 H -0.212 1.212
12 H -0.201 1.201
13 C 0.291 3.709
14 O -0.399 6.399
15 C -0.104 4.104
16 N -0.221 5.221
17 C -0.081 4.081
18 C -0.106 4.106
19 H 0.133 0.867
20 C 0.332 3.668
21 O -0.394 6.394
22 O -0.329 6.329
23 C -0.069 4.069
24 H 0.123 0.877
25 C -0.165 4.165
26 C -0.206 4.206
27 C -0.220 4.220
28 C -0.082 4.082
29 H 0.078 0.922
30 H 0.067 0.933
31 H 0.080 0.920
32 H 0.101 0.899
33 H 0.081 0.919
34 H 0.049 0.951
35 H 0.061 0.939
36 H 0.073 0.927
37 H 0.077 0.923
38 H 0.118 0.882
39 H 0.077 0.923
40 H 0.105 0.895
41 H 0.268 0.732
42 H 0.125 0.875
43 H 0.116 0.884
44 H 0.112 0.888
45 H 0.110 0.890
46 H 0.112 0.888
47 H 0.131 0.869
48 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges -9.281 -3.994 20.126 22.520
hybrid contribution 0.462 -0.533 0.146 0.720
sum -8.818 -4.526 20.272 22.566
Atomic orbital electron populations
1.22223 0.96920 1.01356 1.02194 1.21400 0.93377 0.84371 1.02652
1.48255 1.64039 1.13199 1.07682 1.19236 0.96191 0.93573 0.78030
1.21408 0.96956 1.31924 1.06180 0.92526 1.24924 0.97799 0.94926
0.96401 1.69918 1.35705 1.33490 1.14367 0.86570 0.84910 0.78204
0.77813 1.20291 1.21215 1.20143 1.20052 0.79034 0.87123 0.84679
1.90655 1.44496 1.17956 1.86759 1.22328 1.01170 0.95929 0.90936
1.64610 1.50392 1.07143 0.99968 1.22829 1.00383 0.94785 0.90131
1.21967 0.98945 0.98992 0.90726 0.86682 1.23234 0.78754 0.81440
0.83395 1.90717 1.47994 1.26252 1.74390 1.84533 1.67601 1.43484
1.37301 1.21781 0.97808 0.93771 0.93564 0.87714 1.22254 0.98510
0.96816 0.98953 1.22989 1.03193 0.91836 1.02577 1.22988 1.01972
1.05000 0.92081 1.23446 0.94261 0.94395 0.96124 0.92191 0.93323
0.91986 0.89892 0.91896 0.95128 0.93948 0.92702 0.92349 0.88178
0.92284 0.89538 0.73248 0.87521 0.88404 0.88781 0.89031 0.88781
0.86863 0.93794
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.14 10.18 37.16 0.38 -1.76 16
2 C 0.11 1.63 5.85 -4.04 -0.02 1.61 16
3 N -0.60 -12.31 2.46 -175.06 -0.43 -12.74 16
4 C 0.25 6.43 5.16 -5.19 -0.03 6.40 16
5 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16
6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16
7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16
8 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16
9 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16
10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16
12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
13 C 0.51 10.25 7.31 -10.98 -0.08 10.17 16
14 O -0.52 -12.90 13.88 5.55 0.08 -12.82 16
15 C 0.03 0.40 3.77 -4.97 -0.02 0.39 16
16 N -0.50 -7.24 5.11 -231.90 -1.18 -8.43 16
17 C 0.05 0.51 6.33 -2.75 -0.02 0.49 16
18 C -0.09 -0.88 2.79 -90.41 -0.25 -1.13 16
19 H 0.12 0.93 7.85 -51.93 -0.41 0.53 16
20 C 0.49 5.23 6.99 36.01 0.25 5.48 16
21 O -0.51 -6.89 15.25 -18.75 -0.29 -7.17 16
22 O -0.52 -4.06 13.35 -39.25 -0.52 -4.59 16
23 C -0.05 -0.61 2.58 -88.76 -0.23 -0.84 16
24 H 0.10 1.52 6.73 -51.93 -0.35 1.17 16
25 C -0.15 -1.51 5.12 -90.62 -0.46 -1.98 16
26 C -0.17 -1.73 10.20 -26.69 -0.27 -2.00 16
27 C -0.18 -1.73 9.95 -26.69 -0.27 -2.00 16
28 C 0.04 0.64 5.03 -1.90 -0.01 0.63 16
29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
30 H 0.05 0.58 7.13 -51.92 -0.37 0.21 16
31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16
32 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16
33 H 0.06 0.79 6.60 -51.93 -0.34 0.45 16
34 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16
35 H 0.04 1.24 7.43 -51.93 -0.39 0.86 16
36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
37 H 0.06 0.71 6.72 -51.93 -0.35 0.36 16
38 H 0.10 1.33 7.70 -51.93 -0.40 0.93 16
39 H 0.06 0.52 7.68 -51.93 -0.40 0.12 16
40 H 0.09 0.93 7.64 -51.93 -0.40 0.53 16
41 H 0.41 1.57 9.10 45.56 0.41 1.98 16
42 H 0.11 1.01 7.94 -51.93 -0.41 0.60 16
43 H 0.10 1.09 8.07 -51.93 -0.42 0.67 16
44 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16
45 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16
46 H 0.09 0.99 6.68 -51.93 -0.35 0.64 16
47 H 0.11 2.03 6.43 -51.93 -0.33 1.69 16
48 H 0.04 0.58 7.77 -51.93 -0.40 0.17 16
LS Contribution 386.56 15.07 5.83 5.83
Total: -1.00 -34.97 386.56 -9.23 -44.20
By element:
Atomic # 1 Polarization: 9.72 SS G_CDS: -6.97 Total: 2.74 kcal
Atomic # 6 Polarization: 3.35 SS G_CDS: -1.45 Total: 1.90 kcal
Atomic # 7 Polarization: -46.22 SS G_CDS: -0.88 Total: -47.10 kcal
Atomic # 8 Polarization: -23.84 SS G_CDS: -0.73 Total: -24.58 kcal
Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -34.97 -9.23 -44.20 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001589730075.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.043 kcal
(2) G-P(sol) polarization free energy of solvation -34.974 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.017 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.205 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.248 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds