Wall clock time and date at job start Tue Mar 31 2020 15:36:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 N 1.46501 * 109.47352 * 2 1
4 4 C 1.46493 * 120.00324 * 270.00610 * 3 2 1
5 5 C 1.50707 * 109.46725 * 269.99693 * 4 3 2
6 6 H 1.07997 * 120.00416 * 359.97438 * 5 4 3
7 7 C 1.37880 * 119.99595 * 179.97438 * 5 4 3
8 8 N 1.31506 * 120.00352 * 359.97438 * 7 5 4
9 9 Si 1.86807 * 119.99499 * 180.02562 * 7 5 4
10 10 H 1.48492 * 109.47059 * 60.00583 * 9 7 5
11 11 H 1.48503 * 109.46580 * 180.02562 * 9 7 5
12 12 H 1.48491 * 109.47024 * 300.00101 * 9 7 5
13 13 C 1.34777 * 119.99779 * 89.99786 * 3 2 1
14 14 O 1.21288 * 119.99901 * 179.72525 * 13 3 2
15 15 C 1.50704 * 120.00325 * 0.02562 * 13 3 2
16 16 N 1.46898 * 109.47417 * 185.83959 * 15 13 3
17 17 C 1.47901 * 111.00044 * 176.64147 * 16 15 13
18 18 C 1.53995 * 107.05200 * 214.15577 * 17 16 15
19 19 H 1.08998 * 110.31121 * 120.14467 * 18 17 16
20 20 C 1.50707 * 110.30316 * 242.30313 * 18 17 16
21 21 O 1.20827 * 119.99604 * 118.54966 * 20 18 17
22 22 O 1.34227 * 120.00395 * 298.54617 * 20 18 17
23 23 C 1.54596 * 105.14396 * 1.21924 * 18 17 16
24 24 H 1.09000 * 110.72545 * 263.42293 * 23 18 17
25 25 C 1.52997 * 110.72262 * 140.31955 * 23 18 17
26 26 C 1.53003 * 117.50160 * 128.74913 * 25 23 18
27 27 C 1.52998 * 117.49989 * 60.08791 * 25 23 18
28 28 C 1.48533 * 111.00070 * 59.23516 * 16 15 13
29 29 H 1.08996 * 109.47054 * 180.02562 * 1 2 3
30 30 H 1.09009 * 109.46924 * 299.99803 * 1 2 3
31 31 H 1.08997 * 109.47127 * 59.99843 * 1 2 3
32 32 H 1.08996 * 109.47132 * 239.99996 * 2 1 3
33 33 H 1.09001 * 109.47590 * 120.00204 * 2 1 3
34 34 H 1.09000 * 109.47102 * 29.99432 * 4 3 2
35 35 H 1.09000 * 109.47865 * 149.99742 * 4 3 2
36 36 H 0.97006 * 120.00333 * 179.97438 * 8 7 5
37 37 H 1.08999 * 109.46608 * 305.83909 * 15 13 3
38 38 H 1.09002 * 109.47230 * 65.83399 * 15 13 3
39 39 H 1.09001 * 109.91612 * 333.49818 * 17 16 15
40 40 H 1.08991 * 109.92051 * 94.59995 * 17 16 15
41 41 H 0.96691 * 117.00540 * 180.02562 * 22 20 18
42 42 H 1.09000 * 115.54812 * 274.41463 * 25 23 18
43 43 H 1.09001 * 117.49542 * 359.97438 * 26 25 23
44 44 H 1.08996 * 117.50340 * 145.01557 * 26 25 23
45 45 H 1.09005 * 117.49931 * 214.97785 * 27 25 23
46 46 H 1.09002 * 117.50073 * 359.97438 * 27 25 23
47 47 H 1.08991 * 110.66944 * 278.15743 * 28 16 15
48 48 H 1.08999 * 110.66455 * 41.29344 * 28 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2624 2.0719 -1.2686
5 6 3.6858 1.8351 -1.7037
6 1 4.3429 1.2309 -1.0958
7 6 4.1490 2.3898 -2.8779
8 7 3.3488 3.1250 -3.6184
9 14 5.9131 2.0956 -3.4175
10 1 6.1400 0.6389 -3.5950
11 1 6.1605 2.7959 -4.7035
12 1 6.8409 2.6188 -2.3830
13 6 2.2429 2.0165 1.1672
14 8 2.6520 3.1583 1.1673
15 6 1.9923 1.3059 2.4724
16 7 2.1754 2.2470 3.5854
17 6 1.8592 1.6050 4.8798
18 6 1.2378 2.6880 5.7811
19 1 0.2299 2.3994 6.0793
20 6 2.0994 2.9143 6.9967
21 8 2.5936 3.9992 7.1933
22 8 2.3178 1.9108 7.8609
23 6 1.1948 3.9636 4.9088
24 1 2.0592 4.5969 5.1086
25 6 -0.1051 4.7358 5.1426
26 6 0.0074 6.2270 5.4665
27 6 -0.3860 5.2329 6.5621
28 6 1.2455 3.3992 3.4668
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3633 0.5139 0.8901
31 1 -0.3633 0.5138 -0.8899
32 1 1.8933 -0.5138 -0.8899
33 1 1.8934 -0.5139 0.8899
34 1 1.5816 1.6878 -2.0283
35 1 2.0955 3.1411 -1.1383
36 1 3.6748 3.5156 -4.4444
37 1 0.9727 0.9208 2.4863
38 1 2.6945 0.4788 2.5765
39 1 1.1464 0.7945 4.7279
40 1 2.7708 1.2174 5.3345
41 1 2.8767 2.1039 8.6259
42 1 -0.9573 4.4137 4.5442
43 1 1.0076 6.6577 5.5134
44 1 -0.7710 6.8858 5.0816
45 1 -1.4232 5.2382 6.8975
46 1 0.3551 5.0094 7.3295
47 1 1.6413 4.1435 2.7760
48 1 0.2576 3.0651 3.1496
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001589730075.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:36:47
Heat of formation + Delta-G solvation = -116.386765 kcal
Electronic energy + Delta-G solvation = -28593.013635 eV
Core-core repulsion = 24647.853565 eV
Total energy + Delta-G solvation = -3945.160070 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 324.188 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-41.87085 -40.81216 -39.50181 -37.67959 -37.01996 -36.82054 -34.92121 -33.25092
-31.56441 -30.40563 -29.58694 -27.60121 -24.94590 -24.68696 -24.06742 -23.32314
-22.59943 -22.12588 -20.57589 -19.85210 -18.91647 -18.60523 -18.17645 -17.70288
-17.48971 -17.03939 -16.55328 -16.28600 -16.15076 -15.66361 -15.50805 -14.96449
-14.70689 -14.60750 -14.39645 -14.12206 -14.01914 -13.70917 -13.38267 -13.26271
-13.19518 -13.03532 -12.78664 -12.67616 -12.62273 -12.52532 -12.47493 -12.34332
-12.28380 -12.12889 -11.86186 -11.80589 -11.70484 -11.51223 -11.12285 -10.87005
-10.63522 -10.44484 -9.46401 -9.29950 -8.21385 -6.36015 1.19537 1.35838
1.40676 1.47536 1.89281 2.06670 2.25000 2.41834 2.76844 2.96760
3.07943 3.40826 3.54818 3.72584 3.78470 3.97901 4.11635 4.13734
4.16128 4.26291 4.29192 4.42935 4.45824 4.46266 4.49476 4.59848
4.66321 4.68966 4.76549 4.84505 4.96412 5.00890 5.01599 5.03915
5.08090 5.15115 5.23958 5.25439 5.34487 5.41456 5.59945 5.62248
5.81520 5.86808 5.95793 6.08845 6.72434 6.86498 7.00293 7.30529
7.57206 8.85142
Molecular weight = 324.19amu
Principal moments of inertia in cm(-1)
A = 0.015551 B = 0.002971 C = 0.002936
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1800.115024 B = 9420.658294 C = 9534.838876
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.099 3.901
3 N -0.605 5.605
4 C 0.266 3.734
5 C -0.542 4.542
6 H 0.052 0.948
7 C 0.007 3.993
8 N -0.929 5.929
9 Si 0.965 3.035
10 H -0.259 1.259
11 H -0.278 1.278
12 H -0.280 1.280
13 C 0.494 3.506
14 O -0.581 6.581
15 C 0.044 3.956
16 N -0.528 5.528
17 C 0.050 3.950
18 C -0.081 4.081
19 H 0.147 0.853
20 C 0.494 3.506
21 O -0.545 6.545
22 O -0.506 6.506
23 C -0.044 4.044
24 H 0.070 0.930
25 C -0.148 4.148
26 C -0.185 4.185
27 C -0.165 4.165
28 C 0.050 3.950
29 H 0.096 0.904
30 H 0.061 0.939
31 H 0.036 0.964
32 H 0.070 0.930
33 H 0.102 0.898
34 H 0.021 0.979
35 H -0.006 1.006
36 H 0.267 0.733
37 H 0.096 0.904
38 H 0.123 0.877
39 H 0.095 0.905
40 H 0.088 0.912
41 H 0.427 0.573
42 H 0.122 0.878
43 H 0.078 0.922
44 H 0.106 0.894
45 H 0.115 0.885
46 H 0.083 0.917
47 H 0.063 0.937
48 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.995 -8.255 22.696 26.536
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C -0.023 4.023
3 N -0.337 5.337
4 C 0.144 3.856
5 C -0.581 4.581
6 H 0.070 0.930
7 C -0.191 4.191
8 N -0.569 5.569
9 Si 0.790 3.210
10 H -0.183 1.183
11 H -0.203 1.203
12 H -0.206 1.206
13 C 0.282 3.718
14 O -0.460 6.460
15 C -0.087 4.087
16 N -0.253 5.253
17 C -0.077 4.077
18 C -0.100 4.100
19 H 0.165 0.835
20 C 0.338 3.662
21 O -0.435 6.435
22 O -0.320 6.320
23 C -0.063 4.063
24 H 0.088 0.912
25 C -0.167 4.167
26 C -0.222 4.222
27 C -0.202 4.202
28 C -0.077 4.077
29 H 0.115 0.885
30 H 0.080 0.920
31 H 0.055 0.945
32 H 0.088 0.912
33 H 0.120 0.880
34 H 0.039 0.961
35 H 0.012 0.988
36 H 0.075 0.925
37 H 0.114 0.886
38 H 0.140 0.860
39 H 0.113 0.887
40 H 0.106 0.894
41 H 0.289 0.711
42 H 0.139 0.861
43 H 0.096 0.904
44 H 0.125 0.875
45 H 0.133 0.867
46 H 0.101 0.899
47 H 0.081 0.919
48 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -10.355 -7.233 22.209 25.549
hybrid contribution 0.807 0.464 -0.458 1.038
sum -9.548 -6.769 21.750 24.699
Atomic orbital electron populations
1.22150 0.94536 1.03507 1.01596 1.21754 0.95312 0.81322 1.03960
1.48281 1.64203 1.15143 1.06088 1.18625 0.95038 0.91385 0.80518
1.21710 0.98042 1.31947 1.06399 0.92955 1.25843 1.02278 0.94525
0.96493 1.70040 1.37756 1.34273 1.14802 0.85505 0.79164 0.79091
0.77278 1.18290 1.20349 1.20594 1.21181 0.77557 0.86695 0.86352
1.90641 1.46922 1.20727 1.87753 1.22247 1.03790 0.95341 0.87327
1.64489 1.51536 1.07751 1.01553 1.22885 1.01529 0.95374 0.87885
1.21967 1.00494 0.97417 0.90151 0.83543 1.23307 0.78091 0.81162
0.83678 1.90722 1.49510 1.27892 1.75341 1.84480 1.67706 1.42120
1.37676 1.21559 0.97474 0.94515 0.92800 0.91194 1.22256 0.98007
0.96357 1.00032 1.23033 1.02702 0.92398 1.04067 1.22990 1.02861
1.03262 0.91082 1.23209 0.94408 0.93684 0.96394 0.88544 0.92042
0.94520 0.91180 0.87975 0.96144 0.98819 0.92462 0.88601 0.85961
0.88734 0.89400 0.71119 0.86055 0.90381 0.87526 0.86672 0.89866
0.91869 0.92303
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.62 10.18 71.98 0.73 -2.89 16
2 C 0.10 2.84 5.85 86.38 0.51 3.35 16
3 N -0.61 -25.18 2.46 -826.15 -2.03 -27.21 16
4 C 0.27 14.46 5.16 85.64 0.44 14.90 16
5 C -0.54 -31.75 9.39 25.60 0.24 -31.51 16
6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16
7 C 0.01 0.44 5.46 84.66 0.46 0.90 16
8 N -0.93 -57.09 13.29 21.45 0.28 -56.80 16
9 Si 0.97 45.76 29.54 68.60 2.03 47.78 16
10 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16
11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16
12 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16
13 C 0.49 20.26 7.31 87.66 0.64 20.90 16
14 O -0.58 -30.43 13.88 -3.05 -0.04 -30.47 16
15 C 0.04 1.16 3.77 85.56 0.32 1.49 16
16 N -0.53 -14.71 5.11 -887.59 -4.53 -19.24 16
17 C 0.05 0.91 6.33 86.45 0.55 1.46 16
18 C -0.08 -1.44 2.79 -10.66 -0.03 -1.47 16
19 H 0.15 1.71 7.85 -2.39 -0.02 1.69 16
20 C 0.49 9.68 6.99 71.24 0.50 10.17 16
21 O -0.54 -14.77 15.25 21.96 0.33 -14.43 16
22 O -0.51 -6.45 13.35 -51.39 -0.69 -7.14 16
23 C -0.04 -1.06 2.58 -9.59 -0.02 -1.09 16
24 H 0.07 2.18 6.73 -2.39 -0.02 2.16 16
25 C -0.15 -2.91 5.12 -10.79 -0.06 -2.97 16
26 C -0.19 -3.82 10.20 30.62 0.31 -3.51 16
27 C -0.17 -2.86 9.95 30.62 0.30 -2.56 16
28 C 0.05 1.46 5.03 86.65 0.44 1.89 16
29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16
30 H 0.06 1.24 7.13 -2.38 -0.02 1.22 16
31 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16
32 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16
33 H 0.10 2.15 6.60 -2.39 -0.02 2.14 16
34 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16
35 H -0.01 -0.40 7.43 -2.39 -0.02 -0.42 16
36 H 0.27 15.40 8.31 -92.70 -0.77 14.62 16
37 H 0.10 1.86 6.72 -2.39 -0.02 1.84 16
38 H 0.12 2.76 7.70 -2.39 -0.02 2.74 16
39 H 0.09 1.09 7.68 -2.39 -0.02 1.08 16
40 H 0.09 1.59 7.64 -2.39 -0.02 1.57 16
41 H 0.43 2.16 9.10 -74.06 -0.67 1.49 16
42 H 0.12 2.05 7.94 -2.39 -0.02 2.03 16
43 H 0.08 1.90 8.07 -2.39 -0.02 1.88 16
44 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16
45 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16
46 H 0.08 1.66 6.68 -2.39 -0.02 1.65 16
47 H 0.06 2.47 6.43 -2.39 -0.02 2.45 16
48 H 0.06 1.47 7.77 -2.39 -0.02 1.45 16
Total: -1.00 -83.14 386.56 0.98 -82.16
By element:
Atomic # 1 Polarization: 15.98 SS G_CDS: 0.29 Total: 16.28 kcal
Atomic # 6 Polarization: 3.74 SS G_CDS: 5.33 Total: 9.08 kcal
Atomic # 7 Polarization: -96.97 SS G_CDS: -6.28 Total: -103.25 kcal
Atomic # 8 Polarization: -51.65 SS G_CDS: -0.39 Total: -52.05 kcal
Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal
Total: -83.14 0.98 -82.16 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001589730075.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.223 kcal
(2) G-P(sol) polarization free energy of solvation -83.144 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.367 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.980 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.164 kcal
(6) G-S(sol) free energy of system = (1) + (5) -116.387 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds