Wall clock time and date at job start Tue Mar 31 2020 13:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33869 * 122.92675 * 2 1 4 4 C 1.41561 * 125.97457 * 359.97438 * 3 2 1 5 5 O 1.21674 * 119.99803 * 0.02942 * 4 3 2 6 6 O 1.34923 * 120.00298 * 180.02562 * 4 3 2 7 7 C 1.51453 * 108.05551 * 179.97438 * 3 2 1 8 8 C 1.54162 * 103.26929 * 0.02562 * 7 3 2 9 9 H 1.08999 * 110.49762 * 118.80420 * 8 7 3 10 10 C 1.53004 * 110.49239 * 241.32782 * 8 7 3 11 11 N 1.46897 * 109.47132 * 184.99890 * 10 8 7 12 12 C 1.46901 * 111.00161 * 65.70327 * 11 10 8 13 13 C 1.53231 * 109.34141 * 187.25588 * 12 11 10 14 14 H 1.08998 * 109.63543 * 65.88063 * 13 12 11 15 15 C 1.53008 * 109.78784 * 186.36440 * 13 12 11 16 16 N 1.47084 * 108.52212 * 306.16315 * 13 12 11 17 17 C 1.36933 * 120.88668 * 231.20894 * 16 13 12 18 18 H 1.08007 * 119.99718 * 127.19569 * 17 16 13 19 19 C 1.38810 * 120.00049 * 307.20641 * 17 16 13 20 20 N 1.31619 * 120.00418 * 156.96170 * 19 17 16 21 21 Si 1.86801 * 119.99879 * 336.95060 * 19 17 16 22 22 H 1.48501 * 109.47121 * 95.26767 * 21 19 17 23 23 H 1.48497 * 109.47510 * 215.27243 * 21 19 17 24 24 H 1.48500 * 109.47098 * 335.27037 * 21 19 17 25 25 C 1.47080 * 118.23217 * 51.19054 * 16 13 12 26 26 H 1.09000 * 109.63375 * 68.52355 * 25 16 13 27 27 C 1.53003 * 109.62728 * 189.10908 * 25 16 13 28 28 C 1.46903 * 111.00188 * 190.00386 * 11 10 8 29 29 O 1.33753 * 122.93134 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47114 * 90.00145 * 1 2 3 31 31 H 1.09000 * 109.46832 * 209.99516 * 1 2 3 32 32 H 1.08998 * 109.47699 * 329.99786 * 1 2 3 33 33 H 0.96700 * 114.00498 * 180.02562 * 6 4 3 34 34 H 1.08996 * 110.66162 * 241.55667 * 7 3 2 35 35 H 1.08998 * 110.65545 * 118.44452 * 7 3 2 36 36 H 1.09001 * 109.46707 * 65.00126 * 10 8 7 37 37 H 1.08994 * 109.47235 * 305.00289 * 10 8 7 38 38 H 1.09001 * 109.48954 * 67.28901 * 12 11 10 39 39 H 1.09004 * 109.48772 * 307.21356 * 12 11 10 40 40 H 1.09000 * 109.47219 * 186.15503 * 15 13 12 41 41 H 1.08996 * 109.46912 * 306.15536 * 15 13 12 42 42 H 1.09001 * 109.46757 * 66.15872 * 15 13 12 43 43 H 0.96994 * 120.00421 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.47226 * 62.59028 * 27 25 16 45 45 H 1.08996 * 109.47346 * 182.59616 * 27 25 16 46 46 H 1.09001 * 109.46549 * 302.59490 * 27 25 16 47 47 H 1.08998 * 109.49378 * 52.78625 * 28 11 10 48 48 H 1.09007 * 109.51399 * 292.72239 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2347 1.1237 0.0000 4 6 1.7251 2.4444 -0.0005 5 8 0.5230 2.6326 -0.0005 6 8 2.5723 3.4944 -0.0010 7 6 3.6985 0.7350 0.0006 8 6 3.6554 -0.8061 0.0003 9 1 4.1369 -1.2012 -0.8942 10 6 4.3272 -1.3610 1.2580 11 7 4.3804 -2.8268 1.1785 12 6 5.2575 -3.2632 0.0838 13 6 5.1452 -4.7824 -0.0816 14 1 4.1403 -5.0412 -0.4152 15 6 6.1689 -5.2686 -1.1096 16 7 5.4124 -5.4150 1.2190 17 6 6.3302 -6.4248 1.3342 18 1 7.1198 -6.3556 2.0679 19 6 6.2458 -7.5370 0.5080 20 7 7.3151 -8.2694 0.2789 21 14 4.6144 -7.9945 -0.2785 22 1 4.5463 -7.4209 -1.6466 23 1 4.4992 -9.4730 -0.3554 24 1 3.5006 -7.4533 0.5411 25 6 4.6679 -4.9340 2.3928 26 1 3.6171 -5.2073 2.2972 27 6 5.2517 -5.5571 3.6624 28 6 4.7990 -3.4088 2.4608 29 8 2.2341 -1.1226 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 2.1319 4.3553 -0.0009 34 1 4.1945 1.1059 0.8975 35 1 4.1951 1.1056 -0.8961 36 1 3.7538 -1.0653 2.1366 37 1 5.3394 -0.9642 1.3344 38 1 6.2888 -2.9977 0.3163 39 1 4.9551 -2.7731 -0.8417 40 1 6.0125 -6.3295 -1.3044 41 1 6.0481 -4.7074 -2.0361 42 1 7.1755 -5.1152 -0.7204 43 1 7.2560 -9.0468 -0.2981 44 1 6.2866 -5.2363 3.7819 45 1 4.6695 -5.2354 4.5258 46 1 5.2150 -6.6436 3.5838 47 1 4.1642 -3.0244 3.2591 48 1 5.8367 -3.1414 2.6606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594099358.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:28 Heat of formation + Delta-G solvation = -72.984167 kcal Electronic energy + Delta-G solvation = -29015.247296 eV Core-core repulsion = 25071.969303 eV Total energy + Delta-G solvation = -3943.277992 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.55621 -39.92733 -38.64927 -36.27883 -35.31770 -33.24968 -33.05239 -32.32407 -31.48094 -28.83554 -27.71483 -26.20057 -25.89998 -24.34284 -23.57003 -22.30155 -21.27188 -20.54703 -19.59998 -19.27832 -18.13813 -17.34536 -16.55138 -16.47825 -15.72036 -15.43464 -15.31254 -14.95831 -14.76189 -14.54438 -14.21138 -13.95867 -13.50343 -13.27573 -13.17320 -13.02382 -12.84785 -12.62455 -12.35329 -12.16910 -12.13064 -11.89826 -11.73386 -11.64170 -11.60158 -11.47947 -11.10764 -10.97992 -10.72152 -10.56715 -10.45848 -10.20665 -10.13369 -9.94127 -9.69230 -9.44337 -8.64000 -8.39015 -8.00302 -6.45813 -6.03261 -3.57226 0.91301 2.77725 2.83281 3.24538 3.35017 3.48118 3.59680 3.94300 4.30138 4.53042 4.54149 4.61726 4.70303 4.90795 5.05595 5.15738 5.24077 5.26149 5.36329 5.39023 5.45415 5.61363 5.65186 5.69544 5.75554 5.77905 5.88752 5.94647 5.99471 6.05473 6.11740 6.29330 6.30934 6.31839 6.41670 6.46116 6.51112 6.69567 6.78632 6.99424 7.05683 7.14515 7.33593 7.41520 7.50166 7.76290 8.10247 8.52481 9.03704 9.69514 10.27034 11.10006 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.022808 B = 0.003035 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.364349 B = 9222.611956 C = 9398.094038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.217 3.783 3 C -0.356 4.356 4 C 0.555 3.445 5 O -0.538 6.538 6 O -0.509 6.509 7 C -0.087 4.087 8 C 0.078 3.922 9 H 0.111 0.889 10 C 0.049 3.951 11 N -0.532 5.532 12 C 0.044 3.956 13 C 0.172 3.828 14 H 0.031 0.969 15 C -0.142 4.142 16 N -0.598 5.598 17 C -0.270 4.270 18 H 0.070 0.930 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.868 3.132 22 H -0.281 1.281 23 H -0.302 1.302 24 H -0.268 1.268 25 C 0.168 3.832 26 H 0.034 0.966 27 C -0.131 4.131 28 C 0.050 3.950 29 O -0.264 6.264 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.405 0.595 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.035 0.965 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.067 0.933 43 H 0.263 0.737 44 H 0.051 0.949 45 H 0.037 0.963 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.793 19.475 -0.146 21.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.165 3.835 3 C -0.359 4.359 4 C 0.406 3.594 5 O -0.433 6.433 6 O -0.318 6.318 7 C -0.124 4.124 8 C 0.023 3.977 9 H 0.128 0.872 10 C -0.080 4.080 11 N -0.255 5.255 12 C -0.085 4.085 13 C 0.066 3.934 14 H 0.048 0.952 15 C -0.200 4.200 16 N -0.325 5.325 17 C -0.399 4.399 18 H 0.088 0.912 19 C -0.145 4.145 20 N -0.532 5.532 21 Si 0.696 3.304 22 H -0.208 1.208 23 H -0.229 1.229 24 H -0.192 1.192 25 C 0.062 3.938 26 H 0.052 0.948 27 C -0.189 4.189 28 C -0.079 4.079 29 O -0.173 6.173 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.132 0.868 33 H 0.261 0.739 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.275 18.513 -0.300 20.709 hybrid contribution -0.090 0.649 -0.409 0.772 sum -9.365 19.162 -0.709 21.340 Atomic orbital electron populations 1.21160 0.85675 1.05836 1.04968 1.22249 0.94827 0.85118 0.81345 1.19416 0.96265 0.91218 1.28992 1.18201 0.83772 0.85079 0.72372 1.90869 1.16247 1.86603 1.49565 1.85063 1.41750 1.18447 1.86569 1.21502 0.93711 0.93127 1.04097 1.23959 0.78475 0.94350 1.00938 0.87152 1.22410 0.98911 0.90089 0.96563 1.61885 1.52646 1.05330 1.05689 1.22767 0.93922 0.98849 0.92934 1.20664 0.96499 0.88666 0.87603 0.95173 1.22014 1.00377 1.01879 0.95745 1.44498 1.45892 1.39936 1.02125 1.18397 1.04849 0.95121 1.21505 0.91242 1.25839 0.96005 0.95454 0.97187 1.69906 1.27703 1.18421 1.37192 0.87185 0.87261 0.76480 0.79426 1.20789 1.22913 1.19229 1.20643 0.94838 0.89435 0.88834 0.94817 1.21715 0.99997 1.02317 0.94902 1.22669 0.97824 0.97918 0.89481 1.86917 1.19235 1.28360 1.82748 0.88589 0.89744 0.86823 0.73882 0.89474 0.89501 0.90126 0.92868 0.94648 0.92005 0.91246 0.94865 0.91363 0.92708 0.92960 0.94375 0.91254 0.91889 0.94950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.63 36.01 0.35 -0.78 16 2 C 0.22 2.49 7.05 -35.84 -0.25 2.23 16 3 C -0.36 -3.97 6.06 -104.52 -0.63 -4.60 16 4 C 0.56 6.13 8.07 32.00 0.26 6.39 16 5 O -0.54 -6.82 14.75 -19.40 -0.29 -7.10 16 6 O -0.51 -4.36 13.34 -41.10 -0.55 -4.91 16 7 C -0.09 -0.86 6.44 -26.91 -0.17 -1.03 16 8 C 0.08 0.90 3.84 -26.12 -0.10 0.80 16 9 H 0.11 1.25 6.18 -51.93 -0.32 0.93 16 10 C 0.05 0.61 4.50 -3.82 -0.02 0.59 16 11 N -0.53 -8.58 4.63 -234.32 -1.08 -9.66 16 12 C 0.04 0.77 4.77 -3.70 -0.02 0.75 16 13 C 0.17 3.64 2.46 -67.49 -0.17 3.47 16 14 H 0.03 0.69 7.44 -51.93 -0.39 0.30 16 15 C -0.14 -3.07 7.85 37.16 0.29 -2.78 16 16 N -0.60 -13.80 2.26 -157.00 -0.36 -14.16 16 17 C -0.27 -7.13 7.15 -15.06 -0.11 -7.24 16 18 H 0.07 2.01 7.40 -52.48 -0.39 1.62 16 19 C 0.06 1.58 3.88 -17.43 -0.07 1.51 16 20 N -0.89 -25.96 13.97 55.49 0.78 -25.18 16 21 Si 0.87 21.91 24.76 -169.99 -4.21 17.70 16 22 H -0.28 -6.89 6.47 56.52 0.37 -6.53 16 23 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 24 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 25 C 0.17 3.38 3.66 -67.49 -0.25 3.13 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 C -0.13 -2.45 8.19 37.16 0.30 -2.14 16 28 C 0.05 0.84 4.91 -3.70 -0.02 0.82 16 29 O -0.26 -3.45 10.73 -13.31 -0.14 -3.60 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.11 1.13 5.89 -51.93 -0.31 0.82 16 33 H 0.41 1.69 8.98 45.56 0.41 2.10 16 34 H 0.09 0.80 7.74 -51.93 -0.40 0.40 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.97 7.97 -51.93 -0.41 0.56 16 37 H 0.05 0.61 8.12 -51.93 -0.42 0.19 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.93 6.06 -51.93 -0.31 0.62 16 40 H 0.07 1.68 3.32 -51.93 -0.17 1.50 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 1.56 7.72 -51.93 -0.40 1.16 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.05 0.99 7.76 -51.93 -0.40 0.59 16 45 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 1.43 7.53 -51.93 -0.39 1.04 16 47 H 0.06 0.93 7.99 -51.93 -0.41 0.52 16 48 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -31.46 367.12 -7.80 -39.26 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.88 Total: 1.01 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -0.60 Total: 1.11 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.66 Total: -49.00 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.98 Total: -15.61 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.21 Total: 17.70 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.46 -7.80 -39.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594099358.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.725 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds