Wall clock time and date at job start Tue Mar 31 2020 13:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33869 * 122.92675 * 2 1 4 4 C 1.41561 * 125.97457 * 359.97438 * 3 2 1 5 5 O 1.21674 * 119.99803 * 0.02942 * 4 3 2 6 6 O 1.34923 * 120.00298 * 180.02562 * 4 3 2 7 7 C 1.51453 * 108.05551 * 179.97438 * 3 2 1 8 8 C 1.54162 * 103.26929 * 0.02562 * 7 3 2 9 9 H 1.08999 * 110.49762 * 118.80420 * 8 7 3 10 10 C 1.53004 * 110.49239 * 241.32782 * 8 7 3 11 11 N 1.46897 * 109.47132 * 184.99890 * 10 8 7 12 12 C 1.46901 * 111.00161 * 65.70327 * 11 10 8 13 13 C 1.53231 * 109.34141 * 187.25588 * 12 11 10 14 14 H 1.08998 * 109.63543 * 65.88063 * 13 12 11 15 15 C 1.53008 * 109.78784 * 186.36440 * 13 12 11 16 16 N 1.47084 * 108.52212 * 306.16315 * 13 12 11 17 17 C 1.36933 * 120.88668 * 231.20894 * 16 13 12 18 18 H 1.08007 * 119.99718 * 127.19569 * 17 16 13 19 19 C 1.38810 * 120.00049 * 307.20641 * 17 16 13 20 20 N 1.31619 * 120.00418 * 156.96170 * 19 17 16 21 21 Si 1.86801 * 119.99879 * 336.95060 * 19 17 16 22 22 H 1.48501 * 109.47121 * 95.26767 * 21 19 17 23 23 H 1.48497 * 109.47510 * 215.27243 * 21 19 17 24 24 H 1.48500 * 109.47098 * 335.27037 * 21 19 17 25 25 C 1.47080 * 118.23217 * 51.19054 * 16 13 12 26 26 H 1.09000 * 109.63375 * 68.52355 * 25 16 13 27 27 C 1.53003 * 109.62728 * 189.10908 * 25 16 13 28 28 C 1.46903 * 111.00188 * 190.00386 * 11 10 8 29 29 O 1.33753 * 122.93134 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47114 * 90.00145 * 1 2 3 31 31 H 1.09000 * 109.46832 * 209.99516 * 1 2 3 32 32 H 1.08998 * 109.47699 * 329.99786 * 1 2 3 33 33 H 0.96700 * 114.00498 * 180.02562 * 6 4 3 34 34 H 1.08996 * 110.66162 * 241.55667 * 7 3 2 35 35 H 1.08998 * 110.65545 * 118.44452 * 7 3 2 36 36 H 1.09001 * 109.46707 * 65.00126 * 10 8 7 37 37 H 1.08994 * 109.47235 * 305.00289 * 10 8 7 38 38 H 1.09001 * 109.48954 * 67.28901 * 12 11 10 39 39 H 1.09004 * 109.48772 * 307.21356 * 12 11 10 40 40 H 1.09000 * 109.47219 * 186.15503 * 15 13 12 41 41 H 1.08996 * 109.46912 * 306.15536 * 15 13 12 42 42 H 1.09001 * 109.46757 * 66.15872 * 15 13 12 43 43 H 0.96994 * 120.00421 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.47226 * 62.59028 * 27 25 16 45 45 H 1.08996 * 109.47346 * 182.59616 * 27 25 16 46 46 H 1.09001 * 109.46549 * 302.59490 * 27 25 16 47 47 H 1.08998 * 109.49378 * 52.78625 * 28 11 10 48 48 H 1.09007 * 109.51399 * 292.72239 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2347 1.1237 0.0000 4 6 1.7251 2.4444 -0.0005 5 8 0.5230 2.6326 -0.0005 6 8 2.5723 3.4944 -0.0010 7 6 3.6985 0.7350 0.0006 8 6 3.6554 -0.8061 0.0003 9 1 4.1369 -1.2012 -0.8942 10 6 4.3272 -1.3610 1.2580 11 7 4.3804 -2.8268 1.1785 12 6 5.2575 -3.2632 0.0838 13 6 5.1452 -4.7824 -0.0816 14 1 4.1403 -5.0412 -0.4152 15 6 6.1689 -5.2686 -1.1096 16 7 5.4124 -5.4150 1.2190 17 6 6.3302 -6.4248 1.3342 18 1 7.1198 -6.3556 2.0679 19 6 6.2458 -7.5370 0.5080 20 7 7.3151 -8.2694 0.2789 21 14 4.6144 -7.9945 -0.2785 22 1 4.5463 -7.4209 -1.6466 23 1 4.4992 -9.4730 -0.3554 24 1 3.5006 -7.4533 0.5411 25 6 4.6679 -4.9340 2.3928 26 1 3.6171 -5.2073 2.2972 27 6 5.2517 -5.5571 3.6624 28 6 4.7990 -3.4088 2.4608 29 8 2.2341 -1.1226 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 2.1319 4.3553 -0.0009 34 1 4.1945 1.1059 0.8975 35 1 4.1951 1.1056 -0.8961 36 1 3.7538 -1.0653 2.1366 37 1 5.3394 -0.9642 1.3344 38 1 6.2888 -2.9977 0.3163 39 1 4.9551 -2.7731 -0.8417 40 1 6.0125 -6.3295 -1.3044 41 1 6.0481 -4.7074 -2.0361 42 1 7.1755 -5.1152 -0.7204 43 1 7.2560 -9.0468 -0.2981 44 1 6.2866 -5.2363 3.7819 45 1 4.6695 -5.2354 4.5258 46 1 5.2150 -6.6436 3.5838 47 1 4.1642 -3.0244 3.2591 48 1 5.8367 -3.1414 2.6606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594099358.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:27 Heat of formation + Delta-G solvation = -95.391688 kcal Electronic energy + Delta-G solvation = -29016.218959 eV Core-core repulsion = 25071.969303 eV Total energy + Delta-G solvation = -3944.249655 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.39883 -40.76298 -40.09664 -37.07764 -36.75132 -34.65105 -34.08290 -33.79895 -32.91274 -30.09892 -29.14214 -27.68115 -27.16266 -25.73270 -24.54556 -23.37344 -22.52921 -22.03894 -21.03651 -20.44846 -18.91491 -18.43727 -18.16020 -17.46089 -17.11345 -16.49624 -16.37248 -16.27271 -16.20659 -15.93257 -15.29074 -15.18008 -14.94710 -14.56853 -14.19335 -14.14446 -14.11742 -13.91112 -13.72516 -13.61845 -13.36731 -13.04430 -12.88128 -12.80857 -12.69855 -12.57805 -12.45986 -12.38207 -12.18700 -12.15606 -11.92314 -11.81971 -11.69249 -11.43903 -11.40018 -11.19212 -10.47282 -9.48597 -9.24587 -8.35863 -8.15854 -5.67496 0.09537 1.31541 1.40614 1.53447 1.96896 2.02851 2.44412 2.54986 2.82383 3.06618 3.36196 3.48922 3.60585 3.75405 3.92340 4.12641 4.17188 4.22619 4.36930 4.41245 4.47285 4.55972 4.57033 4.58527 4.61699 4.67140 4.68189 4.77800 4.82319 4.84357 4.90176 4.90318 4.91396 4.97845 5.02516 5.13957 5.21238 5.32517 5.44420 5.53094 5.63286 5.65663 5.94623 6.01140 6.13429 6.21577 6.37145 7.06540 7.13181 7.66315 8.26515 9.00350 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.022808 B = 0.003035 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.364349 B = 9222.611956 C = 9398.094038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.208 3.792 3 C -0.362 4.362 4 C 0.557 3.443 5 O -0.560 6.560 6 O -0.505 6.505 7 C -0.079 4.079 8 C 0.077 3.923 9 H 0.114 0.886 10 C 0.053 3.947 11 N -0.543 5.543 12 C 0.057 3.943 13 C 0.165 3.835 14 H 0.019 0.981 15 C -0.137 4.137 16 N -0.612 5.612 17 C -0.249 4.249 18 H 0.036 0.964 19 C 0.019 3.981 20 N -0.935 5.935 21 Si 0.917 3.083 22 H -0.269 1.269 23 H -0.308 1.308 24 H -0.274 1.274 25 C 0.159 3.841 26 H 0.023 0.977 27 C -0.123 4.123 28 C 0.061 3.939 29 O -0.284 6.284 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.424 0.576 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.030 0.970 39 H 0.089 0.911 40 H 0.041 0.959 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.262 0.738 44 H 0.042 0.958 45 H 0.075 0.925 46 H 0.039 0.961 47 H 0.089 0.911 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.928 22.224 -0.304 24.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.155 3.845 3 C -0.365 4.365 4 C 0.407 3.593 5 O -0.456 6.456 6 O -0.316 6.316 7 C -0.116 4.116 8 C 0.023 3.977 9 H 0.131 0.869 10 C -0.075 4.075 11 N -0.267 5.267 12 C -0.072 4.072 13 C 0.059 3.941 14 H 0.037 0.963 15 C -0.194 4.194 16 N -0.339 5.339 17 C -0.378 4.378 18 H 0.054 0.946 19 C -0.179 4.179 20 N -0.578 5.578 21 Si 0.746 3.254 22 H -0.195 1.195 23 H -0.236 1.236 24 H -0.199 1.199 25 C 0.054 3.946 26 H 0.041 0.959 27 C -0.181 4.181 28 C -0.068 4.068 29 O -0.193 6.193 30 H 0.123 0.877 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.283 0.717 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.107 0.893 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.094 0.906 46 H 0.059 0.941 47 H 0.108 0.892 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -10.428 21.322 -0.458 23.740 hybrid contribution 0.261 -0.096 -0.305 0.413 sum -10.167 21.226 -0.763 23.548 Atomic orbital electron populations 1.21170 0.84773 1.05841 1.05545 1.22504 0.95490 0.84923 0.81543 1.19606 0.97022 0.91309 1.28585 1.18215 0.83557 0.85552 0.71928 1.90866 1.17162 1.87005 1.50595 1.85018 1.41452 1.19208 1.85965 1.21487 0.93093 0.91850 1.05211 1.23987 0.77968 0.95364 1.00422 0.86882 1.22465 1.00090 0.87394 0.97554 1.61828 1.52112 1.07888 1.04847 1.22525 0.94107 0.95777 0.94798 1.20746 0.95451 0.91493 0.86395 0.96344 1.21919 0.99263 1.00661 0.97580 1.44688 1.45674 1.39592 1.03914 1.18165 1.04206 0.95733 1.19727 0.94613 1.26210 0.97759 0.95666 0.98277 1.69990 1.29236 1.19421 1.39120 0.86392 0.84106 0.75628 0.79283 1.19530 1.23650 1.19913 1.20833 0.93687 0.92094 0.87980 0.95918 1.21623 1.00122 1.00325 0.96042 1.22467 0.98243 0.95207 0.90843 1.86900 1.19945 1.29258 1.83176 0.87692 0.89024 0.87412 0.71677 0.88436 0.88263 0.89356 0.91265 0.95142 0.89322 0.94059 0.91288 0.93462 0.92857 0.93847 0.90618 0.94149 0.89229 0.95408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 9.63 71.24 0.69 -1.33 16 2 C 0.21 4.29 7.05 24.69 0.17 4.47 16 3 C -0.36 -7.15 6.06 -19.80 -0.12 -7.27 16 4 C 0.56 11.00 8.07 68.64 0.55 11.55 16 5 O -0.56 -13.23 14.75 19.27 0.28 -12.94 16 6 O -0.50 -7.23 13.34 -58.39 -0.78 -8.01 16 7 C -0.08 -1.29 6.44 30.48 0.20 -1.10 16 8 C 0.08 1.53 3.84 30.99 0.12 1.64 16 9 H 0.11 2.15 6.18 -2.39 -0.01 2.13 16 10 C 0.05 1.12 4.50 86.31 0.39 1.51 16 11 N -0.54 -15.94 4.63 -895.24 -4.14 -20.08 16 12 C 0.06 1.82 4.77 86.38 0.41 2.23 16 13 C 0.16 6.78 2.46 44.96 0.11 6.89 16 14 H 0.02 0.82 7.44 -2.39 -0.02 0.80 16 15 C -0.14 -5.78 7.85 71.98 0.56 -5.22 16 16 N -0.61 -28.15 2.26 -650.63 -1.47 -29.62 16 17 C -0.25 -13.45 7.15 84.03 0.60 -12.85 16 18 H 0.04 2.17 7.40 -2.91 -0.02 2.15 16 19 C 0.02 1.09 3.88 84.86 0.33 1.42 16 20 N -0.94 -56.11 13.97 21.65 0.30 -55.81 16 21 Si 0.92 46.06 24.76 68.60 1.70 47.76 16 22 H -0.27 -12.86 6.47 99.48 0.64 -12.22 16 23 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 24 H -0.27 -13.88 7.11 99.48 0.71 -13.17 16 25 C 0.16 6.23 3.66 44.96 0.16 6.39 16 26 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 27 C -0.12 -4.53 8.19 71.98 0.59 -3.94 16 28 C 0.06 1.90 4.91 86.38 0.42 2.33 16 29 O -0.28 -6.69 10.73 -70.54 -0.76 -7.45 16 30 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.11 2.00 5.89 -2.39 -0.01 1.99 16 33 H 0.42 2.38 8.98 -74.06 -0.67 1.72 16 34 H 0.10 1.41 7.74 -2.39 -0.02 1.40 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.79 7.97 -2.39 -0.02 1.77 16 37 H 0.07 1.30 8.12 -2.39 -0.02 1.29 16 38 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 2.37 6.06 -2.38 -0.01 2.35 16 40 H 0.04 1.97 3.32 -2.39 -0.01 1.97 16 41 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.05 2.16 7.72 -2.39 -0.02 2.14 16 43 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.04 1.64 7.76 -2.39 -0.02 1.62 16 45 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.04 1.69 7.53 -2.39 -0.02 1.67 16 47 H 0.09 2.33 7.99 -2.39 -0.02 2.31 16 48 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -69.14 367.12 0.57 -68.57 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.24 Total: 10.83 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 5.19 Total: 6.74 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -5.31 Total: -105.51 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -1.25 Total: -28.40 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.70 Total: 47.76 kcal Total: -69.14 0.57 -68.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594099358.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.820 kcal (2) G-P(sol) polarization free energy of solvation -69.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds