Wall clock time and date at job start Tue Mar 31 2020 13:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.60870 * 2 1 4 4 C 1.53375 * 109.74938 * 239.57516 * 2 1 3 5 5 N 1.46993 * 108.77358 * 190.84169 * 4 2 1 6 6 C 1.34775 * 120.61547 * 235.15594 * 5 4 2 7 7 O 1.21282 * 119.99986 * 4.78438 * 6 5 4 8 8 C 1.50706 * 120.00016 * 184.78510 * 6 5 4 9 9 H 1.08994 * 110.43307 * 313.45654 * 8 6 5 10 10 C 1.54264 * 110.48435 * 75.99694 * 8 6 5 11 11 C 1.54091 * 106.49040 * 142.19473 * 10 8 6 12 12 C 1.54260 * 106.62304 * 0.17268 * 11 10 8 13 13 H 1.09000 * 110.48579 * 94.95572 * 12 11 10 14 14 C 1.50695 * 110.60075 * 217.54569 * 12 11 10 15 15 O 1.20818 * 120.00297 * 114.84038 * 14 12 11 16 16 O 1.34238 * 119.99628 * 294.84113 * 14 12 11 17 17 C 1.54883 * 104.19692 * 336.28053 * 12 11 10 18 18 C 1.46975 * 118.79255 * 54.91576 * 5 4 2 19 19 C 1.53375 * 108.77369 * 305.08020 * 18 5 4 20 20 H 1.08994 * 109.60649 * 289.59145 * 19 18 5 21 21 C 1.52995 * 109.60527 * 169.08015 * 19 18 5 22 22 N 1.46959 * 108.63645 * 49.33840 * 19 18 5 23 23 C 1.36933 * 120.59723 * 124.79085 * 22 19 18 24 24 H 1.08008 * 120.00375 * 235.80951 * 23 22 19 25 25 C 1.38815 * 119.99619 * 55.80850 * 23 22 19 26 26 N 1.31612 * 120.00078 * 19.60568 * 25 23 22 27 27 Si 1.86799 * 119.99877 * 199.60577 * 25 23 22 28 28 H 1.48506 * 109.47221 * 90.00020 * 27 25 23 29 29 H 1.48497 * 109.47282 * 209.99806 * 27 25 23 30 30 H 1.48508 * 109.47325 * 330.00015 * 27 25 23 31 31 H 1.08996 * 109.46877 * 303.68879 * 1 2 3 32 32 H 1.09001 * 109.47158 * 63.68733 * 1 2 3 33 33 H 1.09003 * 109.46942 * 183.68862 * 1 2 3 34 34 H 1.09001 * 109.60581 * 310.48727 * 4 2 1 35 35 H 1.08996 * 109.61108 * 70.82700 * 4 2 1 36 36 H 1.09001 * 110.03144 * 261.56914 * 10 8 6 37 37 H 1.08998 * 110.03158 * 23.00599 * 10 8 6 38 38 H 1.08995 * 110.10934 * 240.82779 * 11 10 8 39 39 H 1.09001 * 109.96338 * 119.43844 * 11 10 8 40 40 H 0.96700 * 116.99384 * 179.97438 * 16 14 12 41 41 H 1.09004 * 110.75411 * 279.62664 * 17 12 11 42 42 H 1.09006 * 110.92039 * 156.33298 * 17 12 11 43 43 H 1.08997 * 109.60710 * 185.25107 * 18 5 4 44 44 H 1.09001 * 109.60578 * 64.90859 * 18 5 4 45 45 H 1.09003 * 109.47211 * 52.30598 * 21 19 18 46 46 H 1.09000 * 109.47184 * 172.30164 * 21 19 18 47 47 H 1.09002 * 109.47711 * 292.30032 * 21 19 18 48 48 H 0.97001 * 120.00162 * 174.95679 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0483 -0.7310 -1.2448 5 7 3.4946 -0.9483 -1.0978 6 6 4.3534 -0.5133 -2.0411 7 8 3.9449 0.1388 -2.9786 8 6 5.8211 -0.8371 -1.9309 9 1 6.1783 -0.6444 -0.9193 10 6 6.0810 -2.3058 -2.3247 11 6 7.4152 -2.3224 -3.0953 12 6 7.9187 -0.8649 -3.1375 13 1 8.6163 -0.6785 -2.3210 14 6 8.5692 -0.5669 -4.4638 15 8 8.0740 0.2430 -5.2111 16 8 9.6990 -1.2013 -4.8147 17 6 6.6364 -0.0148 -2.9596 18 6 3.9879 -1.6441 0.0991 19 6 3.4696 -0.9129 1.3438 20 1 3.9735 0.0488 1.4394 21 6 3.7377 -1.7630 2.5873 22 7 2.0233 -0.6993 1.1948 23 6 1.1508 -1.1436 2.1521 24 1 0.3420 -1.8057 1.8803 25 6 1.3060 -0.7428 3.4721 26 7 2.0133 0.3304 3.7552 27 14 0.5108 -1.7267 4.8465 28 1 1.4531 -2.7748 5.3143 29 1 0.1780 -0.8209 5.9752 30 1 -0.7310 -2.3667 4.3427 31 1 -0.3633 0.5700 0.8551 32 1 -0.3633 0.4555 -0.9212 33 1 -0.3633 -1.0256 0.0661 34 1 1.5444 -1.6928 -1.3404 35 1 1.8545 -0.1268 -2.1310 36 1 6.1559 -2.9244 -1.4304 37 1 5.2764 -2.6688 -2.9642 38 1 7.2582 -2.6928 -4.1084 39 1 8.1373 -2.9521 -2.5756 40 1 10.0791 -0.9771 -5.6752 41 1 6.0954 0.0702 -3.9020 42 1 6.8755 0.9720 -2.5629 43 1 5.0779 -1.6413 0.1006 44 1 3.6246 -2.6717 0.1007 45 1 4.7896 -2.0473 2.6132 46 1 3.4950 -1.1871 3.4804 47 1 3.1194 -2.6601 2.5545 48 1 2.0615 0.6524 4.6689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604779888.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:56 Heat of formation + Delta-G solvation = -109.292768 kcal Electronic energy + Delta-G solvation = -29213.256923 eV Core-core repulsion = 25268.404472 eV Total energy + Delta-G solvation = -3944.852451 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.82712 -39.86146 -37.80351 -36.80071 -36.23767 -34.15478 -33.02543 -31.28395 -30.20210 -29.03076 -27.74543 -26.23864 -25.67479 -24.05412 -23.30821 -21.44648 -20.45626 -20.22559 -19.57740 -18.73838 -18.08073 -17.43100 -16.56308 -16.37031 -15.92496 -15.48317 -15.18799 -14.92429 -14.56235 -14.33353 -14.09599 -13.67546 -13.54205 -13.28233 -13.02757 -12.58693 -12.36764 -12.15674 -11.94625 -11.78429 -11.61929 -11.55614 -11.44908 -11.35770 -11.26873 -11.05927 -10.96652 -10.82527 -10.72443 -10.56265 -10.54894 -10.48067 -10.37489 -10.07992 -9.91436 -9.72262 -9.26592 -8.38678 -8.05319 -6.35739 -5.82366 -3.63226 1.98637 2.75542 2.96965 3.26030 3.35330 3.36461 3.45663 4.16013 4.28693 4.35778 4.60559 4.94010 5.06590 5.09516 5.13872 5.18106 5.21940 5.24211 5.33779 5.43568 5.64592 5.70386 5.73190 5.79628 5.93703 5.97739 6.03940 6.05249 6.13633 6.19849 6.20799 6.31495 6.37053 6.43535 6.53765 6.57702 6.66832 6.79976 6.98254 7.11530 7.26163 7.35115 7.57941 7.66620 7.81135 7.93816 8.57115 8.57952 9.13313 9.64175 10.44045 11.09994 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.024217 B = 0.003075 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.946194 B = 9103.496933 C = 9735.811068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.157 3.843 3 H 0.028 0.972 4 C 0.099 3.901 5 N -0.595 5.595 6 C 0.517 3.483 7 O -0.554 6.554 8 C -0.115 4.115 9 H 0.103 0.897 10 C -0.110 4.110 11 C -0.106 4.106 12 C -0.089 4.089 13 H 0.115 0.885 14 C 0.484 3.516 15 O -0.509 6.509 16 O -0.518 6.518 17 C -0.091 4.091 18 C 0.087 3.913 19 C 0.181 3.819 20 H 0.031 0.969 21 C -0.141 4.141 22 N -0.576 5.576 23 C -0.269 4.269 24 H 0.053 0.947 25 C 0.042 3.958 26 N -0.875 5.875 27 Si 0.885 3.115 28 H -0.281 1.281 29 H -0.290 1.290 30 H -0.275 1.275 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.408 0.592 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.024 0.976 46 H 0.089 0.911 47 H 0.053 0.947 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.421 -6.040 -10.154 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 H 0.046 0.954 4 C -0.025 4.025 5 N -0.326 5.326 6 C 0.304 3.696 7 O -0.433 6.433 8 C -0.136 4.136 9 H 0.121 0.879 10 C -0.148 4.148 11 C -0.144 4.144 12 C -0.108 4.108 13 H 0.133 0.867 14 C 0.326 3.674 15 O -0.396 6.396 16 O -0.330 6.330 17 C -0.128 4.128 18 C -0.038 4.038 19 C 0.074 3.926 20 H 0.049 0.951 21 C -0.199 4.199 22 N -0.300 5.300 23 C -0.399 4.399 24 H 0.070 0.930 25 C -0.161 4.161 26 N -0.514 5.514 27 Si 0.713 3.287 28 H -0.207 1.207 29 H -0.216 1.216 30 H -0.200 1.200 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.266 0.734 41 H 0.117 0.883 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.043 0.957 46 H 0.107 0.893 47 H 0.072 0.928 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.954 -5.512 -10.284 16.705 hybrid contribution -0.030 -0.246 0.411 0.480 sum 11.924 -5.758 -9.873 16.517 Atomic orbital electron populations 1.21620 0.95024 1.01741 0.99961 1.20860 0.93538 0.93793 0.86777 0.95424 1.22293 0.79149 1.00638 1.00377 1.48014 1.07348 1.56577 1.20631 1.20311 0.87865 0.79270 0.82141 1.90651 1.79052 1.39920 1.33638 1.22136 0.93138 0.96820 1.01496 0.87905 1.22122 0.97096 0.94737 1.00831 1.22094 0.97221 0.93594 1.01510 1.21935 0.98022 0.98709 0.92098 0.86700 1.23437 0.77772 0.77236 0.88910 1.90749 1.62845 1.32944 1.53032 1.84555 1.40289 1.65425 1.42728 1.22359 0.92205 0.97312 1.00956 1.22695 0.97965 0.96691 0.86400 1.20610 0.86064 0.95211 0.90691 0.95118 1.21940 0.96963 1.00613 1.00396 1.43920 1.00744 1.65149 1.20220 1.18619 1.10659 1.24011 0.86605 0.92988 1.25643 0.96579 0.94802 0.99123 1.70048 1.41693 1.20487 1.19160 0.86612 0.79730 0.80187 0.82147 1.20741 1.21623 1.19972 0.91679 0.94499 0.92717 0.92187 0.90251 0.90152 0.90929 0.91160 0.90029 0.73377 0.88317 0.90322 0.91117 0.91768 0.95741 0.89285 0.92807 0.93318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.21 37.16 0.31 -2.14 16 2 C 0.16 3.33 3.65 -67.48 -0.25 3.08 16 3 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 4 C 0.10 1.86 5.91 -3.58 -0.02 1.84 16 5 N -0.60 -10.49 2.96 -172.45 -0.51 -11.00 16 6 C 0.52 8.82 6.82 -10.98 -0.07 8.74 16 7 O -0.55 -11.27 15.10 5.56 0.08 -11.19 16 8 C -0.11 -1.44 2.25 -90.11 -0.20 -1.64 16 9 H 0.10 1.17 6.78 -51.93 -0.35 0.82 16 10 C -0.11 -1.11 5.99 -25.50 -0.15 -1.26 16 11 C -0.11 -0.90 6.37 -25.50 -0.16 -1.06 16 12 C -0.09 -0.83 3.36 -90.12 -0.30 -1.14 16 13 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 14 C 0.48 5.08 7.49 36.00 0.27 5.35 16 15 O -0.51 -7.21 16.48 -18.74 -0.31 -7.52 16 16 O -0.52 -3.92 13.42 -39.28 -0.53 -4.45 16 17 C -0.09 -1.13 5.09 -24.74 -0.13 -1.25 16 18 C 0.09 1.45 5.59 -3.59 -0.02 1.43 16 19 C 0.18 3.77 3.27 -67.49 -0.22 3.55 16 20 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 21 C -0.14 -2.88 7.87 37.16 0.29 -2.59 16 22 N -0.58 -13.27 2.72 -157.02 -0.43 -13.70 16 23 C -0.27 -6.69 6.58 -15.06 -0.10 -6.79 16 24 H 0.05 1.33 7.15 -52.48 -0.38 0.95 16 25 C 0.04 1.05 3.35 -17.43 -0.06 0.99 16 26 N -0.87 -23.50 11.86 55.49 0.66 -22.84 16 27 Si 0.88 19.91 29.60 -169.99 -5.03 14.88 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 30 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 31 H 0.06 1.39 7.88 -51.93 -0.41 0.98 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 1.05 7.28 -51.93 -0.38 0.68 16 34 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 35 H 0.08 1.51 7.00 -51.93 -0.36 1.14 16 36 H 0.08 0.70 7.81 -51.93 -0.41 0.29 16 37 H 0.07 0.82 7.83 -51.93 -0.41 0.42 16 38 H 0.07 0.61 7.83 -51.93 -0.41 0.20 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.41 1.45 9.10 45.56 0.41 1.87 16 41 H 0.10 1.52 6.64 -51.93 -0.34 1.18 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 0.96 5.17 -51.93 -0.27 0.69 16 44 H 0.06 1.06 8.11 -51.93 -0.42 0.63 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 2.10 5.12 -51.93 -0.27 1.83 16 47 H 0.05 1.12 7.54 -51.93 -0.39 0.73 16 48 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 LS Contribution 369.94 15.07 5.57 5.57 Total: -1.00 -31.57 369.94 -8.20 -39.77 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.89 Total: 3.36 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -0.82 Total: 7.13 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.28 Total: -47.54 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.75 Total: -23.16 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.57 -8.20 -39.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604779888.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.527 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds