Wall clock time and date at job start Tue Mar 31 2020 13:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.60870 * 2 1 4 4 C 1.53375 * 109.74938 * 239.57516 * 2 1 3 5 5 N 1.46993 * 108.77358 * 190.84169 * 4 2 1 6 6 C 1.34775 * 120.61547 * 235.15594 * 5 4 2 7 7 O 1.21282 * 119.99986 * 4.78438 * 6 5 4 8 8 C 1.50706 * 120.00016 * 184.78510 * 6 5 4 9 9 H 1.08994 * 110.43307 * 313.45654 * 8 6 5 10 10 C 1.54264 * 110.48435 * 75.99694 * 8 6 5 11 11 C 1.54091 * 106.49040 * 142.19473 * 10 8 6 12 12 C 1.54260 * 106.62304 * 0.17268 * 11 10 8 13 13 H 1.09000 * 110.48579 * 94.95572 * 12 11 10 14 14 C 1.50695 * 110.60075 * 217.54569 * 12 11 10 15 15 O 1.20818 * 120.00297 * 114.84038 * 14 12 11 16 16 O 1.34238 * 119.99628 * 294.84113 * 14 12 11 17 17 C 1.54883 * 104.19692 * 336.28053 * 12 11 10 18 18 C 1.46975 * 118.79255 * 54.91576 * 5 4 2 19 19 C 1.53375 * 108.77369 * 305.08020 * 18 5 4 20 20 H 1.08994 * 109.60649 * 289.59145 * 19 18 5 21 21 C 1.52995 * 109.60527 * 169.08015 * 19 18 5 22 22 N 1.46959 * 108.63645 * 49.33840 * 19 18 5 23 23 C 1.36933 * 120.59723 * 124.79085 * 22 19 18 24 24 H 1.08008 * 120.00375 * 235.80951 * 23 22 19 25 25 C 1.38815 * 119.99619 * 55.80850 * 23 22 19 26 26 N 1.31612 * 120.00078 * 19.60568 * 25 23 22 27 27 Si 1.86799 * 119.99877 * 199.60577 * 25 23 22 28 28 H 1.48506 * 109.47221 * 90.00020 * 27 25 23 29 29 H 1.48497 * 109.47282 * 209.99806 * 27 25 23 30 30 H 1.48508 * 109.47325 * 330.00015 * 27 25 23 31 31 H 1.08996 * 109.46877 * 303.68879 * 1 2 3 32 32 H 1.09001 * 109.47158 * 63.68733 * 1 2 3 33 33 H 1.09003 * 109.46942 * 183.68862 * 1 2 3 34 34 H 1.09001 * 109.60581 * 310.48727 * 4 2 1 35 35 H 1.08996 * 109.61108 * 70.82700 * 4 2 1 36 36 H 1.09001 * 110.03144 * 261.56914 * 10 8 6 37 37 H 1.08998 * 110.03158 * 23.00599 * 10 8 6 38 38 H 1.08995 * 110.10934 * 240.82779 * 11 10 8 39 39 H 1.09001 * 109.96338 * 119.43844 * 11 10 8 40 40 H 0.96700 * 116.99384 * 179.97438 * 16 14 12 41 41 H 1.09004 * 110.75411 * 279.62664 * 17 12 11 42 42 H 1.09006 * 110.92039 * 156.33298 * 17 12 11 43 43 H 1.08997 * 109.60710 * 185.25107 * 18 5 4 44 44 H 1.09001 * 109.60578 * 64.90859 * 18 5 4 45 45 H 1.09003 * 109.47211 * 52.30598 * 21 19 18 46 46 H 1.09000 * 109.47184 * 172.30164 * 21 19 18 47 47 H 1.09002 * 109.47711 * 292.30032 * 21 19 18 48 48 H 0.97001 * 120.00162 * 174.95679 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0483 -0.7310 -1.2448 5 7 3.4946 -0.9483 -1.0978 6 6 4.3534 -0.5133 -2.0411 7 8 3.9449 0.1388 -2.9786 8 6 5.8211 -0.8371 -1.9309 9 1 6.1783 -0.6444 -0.9193 10 6 6.0810 -2.3058 -2.3247 11 6 7.4152 -2.3224 -3.0953 12 6 7.9187 -0.8649 -3.1375 13 1 8.6163 -0.6785 -2.3210 14 6 8.5692 -0.5669 -4.4638 15 8 8.0740 0.2430 -5.2111 16 8 9.6990 -1.2013 -4.8147 17 6 6.6364 -0.0148 -2.9596 18 6 3.9879 -1.6441 0.0991 19 6 3.4696 -0.9129 1.3438 20 1 3.9735 0.0488 1.4394 21 6 3.7377 -1.7630 2.5873 22 7 2.0233 -0.6993 1.1948 23 6 1.1508 -1.1436 2.1521 24 1 0.3420 -1.8057 1.8803 25 6 1.3060 -0.7428 3.4721 26 7 2.0133 0.3304 3.7552 27 14 0.5108 -1.7267 4.8465 28 1 1.4531 -2.7748 5.3143 29 1 0.1780 -0.8209 5.9752 30 1 -0.7310 -2.3667 4.3427 31 1 -0.3633 0.5700 0.8551 32 1 -0.3633 0.4555 -0.9212 33 1 -0.3633 -1.0256 0.0661 34 1 1.5444 -1.6928 -1.3404 35 1 1.8545 -0.1268 -2.1310 36 1 6.1559 -2.9244 -1.4304 37 1 5.2764 -2.6688 -2.9642 38 1 7.2582 -2.6928 -4.1084 39 1 8.1373 -2.9521 -2.5756 40 1 10.0791 -0.9771 -5.6752 41 1 6.0954 0.0702 -3.9020 42 1 6.8755 0.9720 -2.5629 43 1 5.0779 -1.6413 0.1006 44 1 3.6246 -2.6717 0.1007 45 1 4.7896 -2.0473 2.6132 46 1 3.4950 -1.1871 3.4804 47 1 3.1194 -2.6601 2.5545 48 1 2.0615 0.6524 4.6689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604779888.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:55 Heat of formation + Delta-G solvation = -129.634785 kcal Electronic energy + Delta-G solvation = -29214.139019 eV Core-core repulsion = 25268.404472 eV Total energy + Delta-G solvation = -3945.734547 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.77232 -41.05513 -39.17762 -37.94199 -37.03760 -35.78224 -34.64893 -33.08466 -31.18799 -29.85933 -29.46197 -27.70190 -27.28028 -25.59981 -24.34093 -22.52512 -22.02609 -21.19498 -21.02566 -19.95983 -18.97500 -18.60501 -17.81334 -17.54466 -17.24059 -16.84442 -16.61301 -16.25946 -16.12392 -15.67053 -15.32843 -15.13149 -14.80489 -14.50079 -14.25058 -14.01017 -13.62291 -13.33762 -13.32487 -13.22977 -12.94492 -12.87930 -12.65351 -12.58503 -12.43193 -12.32565 -12.25618 -12.23201 -12.14387 -12.10096 -11.88752 -11.72892 -11.66533 -11.60320 -11.44384 -11.29478 -10.64941 -10.23157 -9.63519 -8.26857 -7.70398 -5.59314 1.20343 1.46546 1.51448 1.57204 1.63040 1.98178 2.22638 2.50659 3.23925 3.27555 3.43332 3.53068 3.75020 4.00608 4.14730 4.21023 4.29190 4.31002 4.37488 4.42232 4.47404 4.51481 4.55227 4.59497 4.62848 4.70533 4.77124 4.84806 4.87258 4.94751 4.97291 5.05239 5.09563 5.19286 5.23003 5.27383 5.29444 5.39479 5.45240 5.62325 5.63652 5.70253 5.77554 5.96151 6.55516 6.61826 7.00788 7.20821 7.27619 7.79049 8.55360 9.15784 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.024217 B = 0.003075 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.946194 B = 9103.496933 C = 9735.811068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.153 3.847 3 H -0.007 1.007 4 C 0.110 3.890 5 N -0.600 5.600 6 C 0.511 3.489 7 O -0.594 6.594 8 C -0.109 4.109 9 H 0.124 0.876 10 C -0.106 4.106 11 C -0.099 4.099 12 C -0.083 4.083 13 H 0.147 0.853 14 C 0.490 3.510 15 O -0.556 6.556 16 O -0.506 6.506 17 C -0.093 4.093 18 C 0.100 3.900 19 C 0.176 3.824 20 H -0.002 1.002 21 C -0.133 4.133 22 N -0.590 5.590 23 C -0.267 4.267 24 H 0.047 0.953 25 C 0.005 3.995 26 N -0.908 5.908 27 Si 0.939 3.061 28 H -0.273 1.273 29 H -0.299 1.299 30 H -0.271 1.271 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.114 0.886 40 H 0.426 0.574 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.110 0.890 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.048 0.952 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.530 -8.720 -10.122 19.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.046 3.954 3 H 0.011 0.989 4 C -0.014 4.014 5 N -0.331 5.331 6 C 0.301 3.699 7 O -0.475 6.475 8 C -0.130 4.130 9 H 0.142 0.858 10 C -0.143 4.143 11 C -0.136 4.136 12 C -0.101 4.101 13 H 0.165 0.835 14 C 0.334 3.666 15 O -0.447 6.447 16 O -0.320 6.320 17 C -0.131 4.131 18 C -0.023 4.023 19 C 0.070 3.930 20 H 0.016 0.984 21 C -0.191 4.191 22 N -0.316 5.316 23 C -0.397 4.397 24 H 0.065 0.935 25 C -0.194 4.194 26 N -0.549 5.549 27 Si 0.766 3.234 28 H -0.199 1.199 29 H -0.226 1.226 30 H -0.196 1.196 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.133 0.867 40 H 0.287 0.713 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.128 0.872 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.097 -8.234 -10.264 19.284 hybrid contribution -0.679 0.663 0.332 1.005 sum 13.418 -7.571 -9.932 18.330 Atomic orbital electron populations 1.21508 0.93930 1.01671 1.00202 1.20904 0.94579 0.92247 0.87625 0.98939 1.22017 0.80464 1.00527 0.98441 1.48126 1.06908 1.56784 1.21236 1.21172 0.89649 0.77987 0.81113 1.90635 1.80102 1.41549 1.35226 1.22204 0.89388 0.98810 1.02610 0.85810 1.22165 0.97533 0.92735 1.01909 1.22099 0.96895 0.93082 1.01533 1.21954 0.97006 0.98604 0.92574 0.83503 1.23629 0.77888 0.76313 0.88790 1.90747 1.64260 1.35175 1.54497 1.84504 1.38941 1.64458 1.44060 1.22262 0.93727 0.98017 0.99129 1.22572 1.00108 0.96079 0.83552 1.20652 0.84642 0.94461 0.93265 0.98392 1.21802 0.99299 0.99455 0.98553 1.44205 1.01704 1.65299 1.20342 1.18711 1.10715 1.23199 0.87062 0.93537 1.26139 0.97227 0.95282 1.00801 1.70165 1.43531 1.22147 1.19074 0.85766 0.79171 0.78897 0.79554 1.19926 1.22567 1.19552 0.94248 0.91834 0.92383 0.91129 0.90882 0.87487 0.92491 0.91627 0.86730 0.71265 0.91973 0.90850 0.87192 0.90545 0.91884 0.92583 0.93298 0.93848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.54 8.21 71.98 0.59 -3.94 16 2 C 0.15 6.62 3.65 45.03 0.16 6.79 16 3 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 4 C 0.11 4.11 5.91 86.41 0.51 4.62 16 5 N -0.60 -20.53 2.96 -817.90 -2.42 -22.95 16 6 C 0.51 17.11 6.82 87.66 0.60 17.71 16 7 O -0.59 -24.73 15.10 -3.04 -0.05 -24.77 16 8 C -0.11 -2.49 2.25 -10.46 -0.02 -2.52 16 9 H 0.12 2.34 6.78 -2.39 -0.02 2.33 16 10 C -0.11 -1.74 5.99 31.39 0.19 -1.56 16 11 C -0.10 -1.26 6.37 31.39 0.20 -1.06 16 12 C -0.08 -1.31 3.36 -10.47 -0.04 -1.34 16 13 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 14 C 0.49 9.37 7.49 71.23 0.53 9.90 16 15 O -0.56 -15.73 16.48 21.99 0.36 -15.37 16 16 O -0.51 -6.15 13.42 -51.49 -0.69 -6.84 16 17 C -0.09 -2.24 5.09 31.88 0.16 -2.08 16 18 C 0.10 3.08 5.59 86.41 0.48 3.56 16 19 C 0.18 7.21 3.27 45.03 0.15 7.36 16 20 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 21 C -0.13 -5.22 7.87 71.98 0.57 -4.65 16 22 N -0.59 -27.41 2.72 -650.71 -1.77 -29.18 16 23 C -0.27 -13.30 6.58 84.03 0.55 -12.75 16 24 H 0.05 2.37 7.15 -2.91 -0.02 2.35 16 25 C 0.01 0.28 3.35 84.86 0.28 0.56 16 26 N -0.91 -49.92 11.86 21.65 0.26 -49.67 16 27 Si 0.94 41.00 29.60 68.60 2.03 43.03 16 28 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 29 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 30 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 31 H 0.04 1.72 7.88 -2.39 -0.02 1.70 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.06 2.22 7.28 -2.39 -0.02 2.20 16 34 H 0.07 2.49 8.12 -2.39 -0.02 2.47 16 35 H 0.07 2.81 7.00 -2.39 -0.02 2.80 16 36 H 0.11 1.24 7.81 -2.39 -0.02 1.22 16 37 H 0.06 1.15 7.83 -2.39 -0.02 1.13 16 38 H 0.06 0.93 7.83 -2.39 -0.02 0.91 16 39 H 0.11 0.80 8.14 -2.39 -0.02 0.79 16 40 H 0.43 1.95 9.10 -74.06 -0.67 1.28 16 41 H 0.06 1.98 6.64 -2.39 -0.02 1.96 16 42 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.11 2.50 5.17 -2.39 -0.01 2.49 16 44 H 0.08 2.23 8.11 -2.39 -0.02 2.21 16 45 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.06 2.61 5.12 -2.39 -0.01 2.60 16 47 H 0.05 1.93 7.54 -2.39 -0.02 1.92 16 48 H 0.25 13.54 8.32 -92.71 -0.77 12.76 16 Total: -1.00 -72.64 369.94 2.94 -69.70 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.30 Total: 15.47 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: 4.92 Total: 20.59 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -3.93 Total: -101.80 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -0.37 Total: -46.99 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -72.64 2.94 -69.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604779888.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.936 kcal (2) G-P(sol) polarization free energy of solvation -72.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds