Wall clock time and date at job start Tue Mar 31 2020 14:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81403 * 102.99881 * 2 1 4 4 H 1.08995 * 109.47109 * 304.99880 * 3 2 1 5 5 C 1.52995 * 109.47077 * 65.00447 * 3 2 1 6 6 C 1.53001 * 109.46806 * 184.99899 * 3 2 1 7 7 C 1.50699 * 109.47180 * 65.00136 * 6 3 2 8 8 N 1.30297 * 126.34851 * 90.01993 * 7 6 3 9 9 N 1.28525 * 110.05439 * 180.02562 * 8 7 6 10 10 C 1.31218 * 109.86262 * 0.02562 * 9 8 7 11 11 N 1.38584 * 126.47401 * 179.97438 * 10 9 8 12 12 C 1.46847 * 110.99927 * 59.26909 * 11 10 9 13 13 C 1.53034 * 109.52153 * 174.16069 * 12 11 10 14 14 C 1.53121 * 109.28111 * 59.17536 * 13 12 11 15 15 C 1.50698 * 109.52496 * 182.43887 * 14 13 12 16 16 H 1.07998 * 119.99737 * 119.67887 * 15 14 13 17 17 C 1.37876 * 120.00343 * 299.68478 * 15 14 13 18 18 N 1.31521 * 119.99985 * 359.97438 * 17 15 14 19 19 Si 1.86790 * 120.00270 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47342 * 90.00013 * 19 17 15 21 21 H 1.48511 * 109.47403 * 209.99966 * 19 17 15 22 22 H 1.48503 * 109.47368 * 329.99873 * 19 17 15 23 23 C 1.53120 * 109.16037 * 302.34554 * 14 13 12 24 24 C 1.46842 * 111.00122 * 295.05405 * 11 10 9 25 25 N 1.36456 * 107.04951 * 359.73715 * 10 9 8 26 26 C 1.46498 * 127.13461 * 180.26240 * 25 10 9 27 27 H 1.09002 * 109.47001 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47180 * 299.99766 * 1 2 3 29 29 H 1.08997 * 109.47260 * 60.00203 * 1 2 3 30 30 H 1.08995 * 109.47614 * 59.99743 * 5 3 2 31 31 H 1.09000 * 109.46590 * 299.99472 * 5 3 2 32 32 H 1.09005 * 109.46958 * 180.02562 * 5 3 2 33 33 H 1.09007 * 109.46977 * 184.99621 * 6 3 2 34 34 H 1.09000 * 109.47809 * 305.00030 * 6 3 2 35 35 H 1.08999 * 109.45648 * 294.17267 * 12 11 10 36 36 H 1.08996 * 109.46642 * 54.14332 * 12 11 10 37 37 H 1.09003 * 109.50189 * 299.23676 * 13 12 11 38 38 H 1.09001 * 109.50275 * 179.11778 * 13 12 11 39 39 H 1.08996 * 109.52120 * 62.25181 * 14 13 12 40 40 H 0.96994 * 120.00197 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.50076 * 297.71075 * 23 14 13 42 42 H 1.08995 * 109.50155 * 177.59086 * 23 14 13 43 43 H 1.09004 * 109.46303 * 305.85765 * 24 11 10 44 44 H 1.09005 * 109.46452 * 65.82334 * 24 11 10 45 45 H 1.08998 * 109.47260 * 275.50941 * 26 25 10 46 46 H 1.08994 * 109.47338 * 35.51287 * 26 25 10 47 47 H 1.09000 * 109.47220 * 155.51488 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 -0.8418 5 6 1.7428 2.4015 1.3074 6 6 3.7369 1.9412 -0.1257 7 6 4.1919 1.4270 -1.4672 8 7 4.2817 2.1171 -2.5688 9 7 4.7029 1.3684 -3.5248 10 6 4.9055 0.1503 -3.0809 11 7 5.3584 -0.9311 -3.8199 12 6 6.6772 -0.6545 -4.4034 13 6 7.2086 -1.9161 -5.0874 14 6 6.2274 -2.3504 -6.1797 15 6 6.7152 -3.6261 -6.8168 16 1 6.1047 -4.5161 -6.7793 17 6 7.9409 -3.6569 -7.4474 18 7 8.6842 -2.5729 -7.4934 19 14 8.5459 -5.2383 -8.2363 20 1 8.0955 -5.2898 -9.6504 21 1 10.0296 -5.2798 -8.1876 22 1 7.9936 -6.4026 -7.4983 23 6 4.8500 -2.5854 -5.5535 24 6 4.3870 -1.3044 -4.8559 25 7 4.5912 0.1508 -1.7531 26 6 4.6636 -0.9817 -0.8266 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.2354 1.9150 2.1491 31 1 0.6636 2.2778 1.3969 32 1 1.9876 3.4638 1.3071 33 1 3.9902 2.9977 -0.0367 34 1 4.2339 1.3804 0.6659 35 1 6.5888 0.1466 -5.1371 36 1 7.3665 -0.3508 -3.6155 37 1 7.3102 -2.7138 -4.3515 38 1 8.1806 -1.7061 -5.5339 39 1 6.1551 -1.5690 -6.9361 40 1 9.5467 -2.5947 -7.9367 41 1 4.9146 -3.3935 -4.8250 42 1 4.1368 -2.8534 -6.3329 43 1 3.4128 -1.4726 -4.3967 44 1 4.3093 -0.5001 -5.5876 45 1 3.7483 -1.5690 -0.8984 46 1 5.5181 -1.6075 -1.0839 47 1 4.7784 -0.6110 0.1920 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646678837.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:34 Heat of formation + Delta-G solvation = 73.707741 kcal Electronic energy + Delta-G solvation = -26005.947171 eV Core-core repulsion = 22544.075839 eV Total energy + Delta-G solvation = -3461.871331 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.75454 -38.27887 -35.85674 -34.68739 -33.85260 -31.56471 -30.21306 -29.86278 -29.01019 -27.45259 -26.81200 -25.55101 -22.73036 -22.61872 -22.15622 -20.77235 -20.58062 -18.52801 -17.09248 -16.87954 -16.42154 -16.16058 -15.86985 -15.29342 -14.90490 -14.53025 -14.35527 -13.97165 -13.87372 -13.42255 -13.35138 -13.14399 -13.12380 -12.74148 -12.58013 -12.54142 -12.39324 -12.23761 -11.84250 -11.69154 -11.55140 -11.31973 -11.01528 -10.87178 -10.55429 -10.34186 -10.26080 -10.20874 -10.10468 -9.81278 -9.51219 -9.05370 -8.80504 -8.68361 -8.29827 -8.22807 -8.00180 -5.96975 -4.02506 1.31118 1.90682 2.18395 2.48671 3.02028 3.32144 3.39117 3.41996 4.05149 4.20282 4.33913 4.45754 4.57026 4.72958 4.75921 4.79824 4.82367 4.97755 5.18167 5.23632 5.31069 5.33232 5.35676 5.41281 5.45873 5.57174 5.63639 5.69117 5.80937 5.97637 6.03551 6.18405 6.25757 6.26424 6.48181 6.56448 6.76316 6.82174 6.97760 7.10312 7.39878 7.43256 7.71687 7.78782 8.02176 8.12173 8.46608 8.96492 9.01075 9.62046 11.09436 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.027088 B = 0.002774 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.409880 B =10092.141250 C =10570.117852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.257 6.257 3 C -0.054 4.054 4 H 0.095 0.905 5 C -0.146 4.146 6 C -0.006 4.006 7 C 0.163 3.837 8 N -0.288 5.288 9 N -0.315 5.315 10 C 0.365 3.635 11 N -0.465 5.465 12 C 0.070 3.930 13 C -0.103 4.103 14 C 0.047 3.953 15 C -0.510 4.510 16 H 0.055 0.945 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.105 4.105 24 C 0.074 3.926 25 N -0.454 5.454 26 C 0.084 3.916 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.099 0.901 39 H 0.026 0.974 40 H 0.260 0.740 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.469 7.307 20.257 25.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.031 6.031 3 C -0.184 4.184 4 H 0.114 0.886 5 C -0.205 4.205 6 C -0.047 4.047 7 C -0.105 4.105 8 N -0.129 5.129 9 N -0.159 5.159 10 C 0.008 3.992 11 N -0.192 5.192 12 C -0.056 4.056 13 C -0.141 4.141 14 C 0.028 3.972 15 C -0.549 4.549 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.143 4.143 24 C -0.053 4.053 25 N -0.146 5.146 26 C -0.059 4.059 27 H 0.119 0.881 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.130 0.870 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.117 0.883 39 H 0.044 0.956 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.112 0.888 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.625 7.220 19.548 24.365 hybrid contribution -0.513 -0.401 -0.052 0.653 sum -13.138 6.819 19.496 24.478 Atomic orbital electron populations 1.23407 0.94472 1.06469 1.04822 1.86945 1.07465 1.10863 1.97862 1.23231 0.98582 0.94428 1.02141 0.88642 1.22071 1.01532 1.01258 0.95635 1.19775 0.92432 1.03152 0.89335 1.24294 1.05214 0.82130 0.98838 1.73948 1.16914 1.26102 0.95957 1.74662 1.18465 1.00233 1.22563 1.22684 1.00745 0.92418 0.83329 1.58938 1.05122 1.28717 1.26454 1.22372 0.85491 1.00672 0.97038 1.21734 1.02651 0.92686 0.97043 1.18710 0.88853 0.96780 0.92854 1.21167 1.02746 0.96443 1.34495 0.92671 1.24972 0.96859 0.96088 0.96096 1.69867 1.11982 1.27342 1.43809 0.86629 0.77836 0.83982 0.79732 1.20788 1.21319 1.19987 1.21720 0.99942 0.94298 0.98306 1.22182 0.92665 0.99126 0.91295 1.46100 1.48619 1.10436 1.09457 1.22000 1.04718 0.87468 0.91720 0.88144 0.90489 0.90556 0.91087 0.92184 0.91138 0.86955 0.89252 0.93724 0.92708 0.93652 0.88268 0.95632 0.93018 0.92318 0.92410 0.92406 0.93748 0.89459 0.88803 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.45 101.05 1.06 0.22 16 2 S -0.26 -2.33 18.52 -107.50 -1.99 -4.32 16 3 C -0.05 -0.43 2.81 -26.73 -0.08 -0.51 16 4 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 5 C -0.15 -0.77 9.10 37.16 0.34 -0.44 16 6 C -0.01 -0.06 5.05 -27.88 -0.14 -0.20 16 7 C 0.16 2.27 6.75 -154.02 -1.04 1.23 16 8 N -0.29 -5.09 12.18 32.99 0.40 -4.69 16 9 N -0.32 -6.27 12.18 30.32 0.37 -5.90 16 10 C 0.36 6.61 6.42 -318.86 -2.05 4.56 16 11 N -0.47 -8.78 4.67 -174.55 -0.82 -9.59 16 12 C 0.07 1.45 5.36 -3.84 -0.02 1.43 16 13 C -0.10 -2.39 5.12 -26.65 -0.14 -2.52 16 14 C 0.05 1.14 2.16 -91.65 -0.20 0.94 16 15 C -0.51 -13.77 8.56 -34.44 -0.29 -14.06 16 16 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.66 5.31 -17.82 -0.09 1.57 16 18 N -0.89 -25.22 11.37 55.43 0.63 -24.58 16 19 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.10 -2.16 5.32 -26.65 -0.14 -2.30 16 24 C 0.07 1.41 5.39 -3.84 -0.02 1.39 16 25 N -0.45 -6.62 3.14 -121.46 -0.38 -7.01 16 26 C 0.08 0.93 9.58 59.85 0.57 1.51 16 27 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.08 0.41 7.14 -51.93 -0.37 0.04 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.30 6.92 -51.93 -0.36 -0.06 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.11 0.85 8.14 -51.92 -0.42 0.42 16 34 H 0.09 0.65 7.17 -51.93 -0.37 0.28 16 35 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.05 1.07 8.10 -51.93 -0.42 0.65 16 37 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.10 2.57 6.18 -51.93 -0.32 2.25 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 44 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.09 0.96 7.05 -51.93 -0.37 0.59 16 46 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.08 0.68 7.10 -51.93 -0.37 0.31 16 LS Contribution 379.98 15.07 5.73 5.73 Total: -1.00 -31.23 379.98 -11.36 -42.59 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -8.04 Total: -1.14 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -2.24 Total: -7.19 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.20 Total: -51.77 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -2.33 SS G_CDS: -1.99 Total: -4.32 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.23 -11.36 -42.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646678837.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.294 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds